View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16517_low_27 (Length: 242)

Name: NF16517_low_27
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16517_low_27
NF16517_low_27
[»] chr8 (24 HSPs)
chr8 (1-220)||(44672742-44672961)
chr8 (1-239)||(10661107-10661345)
chr8 (1-237)||(36910220-36910460)
chr8 (9-239)||(14549185-14549424)
chr8 (9-239)||(3681895-3682116)
chr8 (3-239)||(18169909-18170147)
chr8 (3-239)||(18633475-18633715)
chr8 (11-239)||(6200733-6200972)
chr8 (1-191)||(3006499-3006701)
chr8 (4-191)||(5803173-5803372)
chr8 (3-239)||(33068221-33068454)
chr8 (114-239)||(30392152-30392277)
chr8 (142-239)||(36827678-36827775)
chr8 (13-74)||(30392104-30392165)
chr8 (1-94)||(44336725-44336819)
chr8 (29-129)||(7428434-7428534)
chr8 (17-132)||(38926424-38926529)
chr8 (3-94)||(11218905-11218996)
chr8 (5-132)||(45366265-45366397)
chr8 (29-84)||(8036024-8036079)
chr8 (29-136)||(28073185-28073292)
chr8 (29-83)||(31497656-31497710)
chr8 (65-146)||(12660240-12660321)
chr8 (1-94)||(33565908-33566003)
[»] chr2 (24 HSPs)
chr2 (1-242)||(25298139-25298380)
chr2 (1-239)||(44979661-44979898)
chr2 (13-239)||(11375867-11376093)
chr2 (1-231)||(42785523-42785758)
chr2 (9-239)||(44035267-44035506)
chr2 (1-239)||(18356857-18357096)
chr2 (1-191)||(9811344-9811536)
chr2 (1-239)||(19937006-19937253)
chr2 (1-239)||(17916746-17916980)
chr2 (1-239)||(34910264-34910505)
chr2 (1-191)||(36413567-36413769)
chr2 (9-191)||(16578597-16578791)
chr2 (1-128)||(41461035-41461167)
chr2 (1-123)||(15320586-15320708)
chr2 (9-146)||(1330971-1331108)
chr2 (29-94)||(17762723-17762788)
chr2 (5-94)||(27301520-27301609)
chr2 (9-121)||(12041598-12041710)
chr2 (1-94)||(5862667-5862760)
chr2 (1-74)||(12884484-12884557)
chr2 (13-94)||(13193864-13193945)
chr2 (29-114)||(28790487-28790572)
chr2 (53-129)||(44085495-44085571)
chr2 (25-73)||(36963977-36964025)
[»] chr3 (34 HSPs)
chr3 (9-239)||(6004279-6004508)
chr3 (2-239)||(21586732-21586971)
chr3 (1-239)||(32880254-32880493)
chr3 (1-204)||(50562496-50562699)
chr3 (1-191)||(34794548-34794739)
chr3 (1-238)||(9827672-9827907)
chr3 (1-191)||(51149594-51149786)
chr3 (1-191)||(35402137-35402334)
chr3 (4-239)||(35532043-35532262)
chr3 (1-191)||(4669574-4669776)
chr3 (20-239)||(43030389-43030624)
chr3 (9-239)||(39097907-39098135)
chr3 (1-189)||(10369165-10369365)
chr3 (47-140)||(48032839-48032931)
chr3 (142-239)||(27642054-27642151)
chr3 (62-191)||(33360968-33361109)
chr3 (1-94)||(26291992-26292085)
chr3 (168-237)||(33002643-33002712)
chr3 (1-94)||(54121974-54122067)
chr3 (1-146)||(55467621-55467771)
chr3 (10-94)||(26758186-26758270)
chr3 (4-94)||(17144766-17144855)
chr3 (4-94)||(40483879-40483969)
chr3 (9-129)||(52631999-52632120)
chr3 (1-94)||(20846423-20846518)
chr3 (2-94)||(22257535-22257627)
chr3 (29-129)||(38651990-38652089)
chr3 (101-136)||(20038443-20038478)
chr3 (35-129)||(45915205-45915298)
chr3 (2-94)||(10481681-10481773)
chr3 (2-70)||(37044875-37044943)
chr3 (42-94)||(42363261-42363313)
chr3 (42-132)||(51191699-51191794)
chr3 (29-83)||(2832446-2832500)
[»] chr7 (44 HSPs)
chr7 (1-239)||(27054622-27054861)
chr7 (2-229)||(32823559-32823784)
chr7 (9-239)||(13852270-13852505)
chr7 (1-239)||(24361385-24361622)
chr7 (1-239)||(31876527-31876758)
chr7 (1-239)||(47903201-47903431)
chr7 (1-191)||(11206295-11206487)
chr7 (11-239)||(31982885-31983115)
chr7 (61-239)||(24361179-24361357)
chr7 (1-209)||(18673112-18673319)
chr7 (25-239)||(43429153-43429365)
chr7 (5-239)||(1335276-1335514)
chr7 (1-191)||(12117553-12117750)
chr7 (1-191)||(47069622-47069824)
chr7 (1-191)||(3213149-3213351)
chr7 (1-191)||(10671774-10671976)
chr7 (1-191)||(47204384-47204586)
chr7 (39-239)||(48675103-48675309)
chr7 (92-239)||(22366500-22366647)
chr7 (9-231)||(7760066-7760293)
chr7 (1-239)||(10069147-10069402)
chr7 (1-133)||(8768955-8769092)
chr7 (4-132)||(7209267-7209395)
chr7 (1-111)||(5932649-5932759)
chr7 (158-239)||(5932760-5932841)
chr7 (3-136)||(11216110-11216243)
chr7 (21-162)||(36507920-36508061)
chr7 (4-163)||(2408928-2409092)
chr7 (9-92)||(7205916-7205999)
chr7 (1-94)||(32942115-32942208)
chr7 (1-94)||(8568590-8568683)
chr7 (29-94)||(23729369-23729434)
chr7 (1-62)||(45898128-45898189)
chr7 (2-129)||(524867-524994)
chr7 (1-115)||(16535758-16535872)
chr7 (1-115)||(16629790-16629904)
chr7 (37-94)||(8118316-8118373)
chr7 (3-94)||(26215160-26215251)
chr7 (158-239)||(36508447-36508528)
chr7 (50-94)||(27456362-27456406)
chr7 (3-94)||(31287815-31287906)
chr7 (29-94)||(48642761-48642826)
chr7 (29-129)||(20334565-20334665)
chr7 (30-94)||(46147198-46147262)
[»] chr5 (37 HSPs)
chr5 (9-239)||(42544620-42544850)
chr5 (25-239)||(12166054-12166269)
chr5 (1-239)||(333169-333406)
chr5 (9-239)||(2226769-2227005)
chr5 (1-239)||(12680961-12681193)
chr5 (1-239)||(30265680-30265920)
chr5 (25-239)||(36176986-36177210)
chr5 (1-242)||(36103494-36103741)
chr5 (1-190)||(27886354-27886545)
chr5 (2-209)||(38433652-38433865)
chr5 (1-239)||(9160934-9161179)
chr5 (1-191)||(30001965-30002156)
chr5 (58-239)||(10174096-10174269)
chr5 (1-231)||(17085136-17085366)
chr5 (1-191)||(667551-667743)
chr5 (1-191)||(15068414-15068616)
chr5 (1-191)||(11917359-11917561)
chr5 (76-239)||(32521106-32521276)
chr5 (58-239)||(35358947-35359133)
chr5 (1-190)||(8408944-8409144)
chr5 (1-191)||(701173-701375)
chr5 (27-209)||(9988772-9988958)
chr5 (1-62)||(23780778-23780839)
chr5 (1-62)||(23867731-23867792)
chr5 (1-94)||(27572081-27572174)
chr5 (172-239)||(23780863-23780930)
chr5 (172-239)||(23867816-23867883)
chr5 (12-131)||(40884295-40884414)
chr5 (1-73)||(12379070-12379143)
chr5 (9-94)||(25495046-25495131)
chr5 (29-94)||(34881360-34881425)
chr5 (6-94)||(2588933-2589021)
chr5 (61-129)||(36567735-36567803)
chr5 (4-94)||(35240860-35240950)
chr5 (9-114)||(1048729-1048833)
chr5 (54-94)||(40692501-40692541)
chr5 (101-129)||(41454927-41454955)
[»] chr1 (34 HSPs)
chr1 (1-239)||(51252306-51252544)
chr1 (10-239)||(33474410-33474638)
chr1 (9-239)||(1161634-1161863)
chr1 (3-239)||(44918503-44918738)
chr1 (1-239)||(29388986-29389229)
chr1 (1-239)||(45691750-45691993)
chr1 (1-239)||(16529380-16529629)
chr1 (1-223)||(42789516-42789732)
chr1 (3-234)||(39256527-39256763)
chr1 (3-239)||(32953994-32954244)
chr1 (4-239)||(33910662-33910908)
chr1 (1-191)||(8211232-8211434)
chr1 (1-191)||(20493702-20493905)
chr1 (103-239)||(24910939-24911076)
chr1 (1-114)||(5155359-5155472)
chr1 (1-209)||(11898964-11899180)
chr1 (1-94)||(36203479-36203572)
chr1 (1-129)||(27507492-27507620)
chr1 (3-129)||(34914089-34914215)
chr1 (101-191)||(5155260-5155352)
chr1 (1-94)||(21685578-21685671)
chr1 (1-94)||(35980423-35980516)
chr1 (1-94)||(2490064-2490157)
chr1 (10-129)||(16537838-16537957)
chr1 (29-94)||(35980304-35980369)
chr1 (52-94)||(17651756-17651798)
chr1 (29-94)||(8165587-8165652)
chr1 (101-146)||(33769936-33769981)
chr1 (42-94)||(9330381-9330433)
chr1 (1-94)||(12973513-12973606)
chr1 (101-146)||(39158297-39158342)
chr1 (1-94)||(40095457-40095550)
chr1 (29-114)||(50471208-50471293)
chr1 (3-94)||(25866794-25866883)
[»] chr4 (40 HSPs)
chr4 (9-239)||(48996046-48996276)
chr4 (1-239)||(30193866-30194105)
chr4 (1-239)||(52344691-52344926)
chr4 (1-239)||(40899970-40900212)
chr4 (9-239)||(40806703-40806939)
chr4 (1-239)||(6333270-6333513)
chr4 (1-239)||(43630531-43630769)
chr4 (20-239)||(23937408-23937628)
chr4 (4-239)||(32136649-32136889)
chr4 (1-239)||(10218632-10218880)
chr4 (9-239)||(5261856-5262085)
chr4 (9-239)||(8176488-8176713)
chr4 (1-191)||(36077526-36077718)
chr4 (1-239)||(51394672-51394910)
chr4 (1-191)||(29644052-29644254)
chr4 (1-191)||(50570885-50571087)
chr4 (1-191)||(29636727-29636929)
chr4 (1-191)||(42557678-42557880)
chr4 (9-106)||(13690872-13690969)
chr4 (1-129)||(48293406-48293534)
chr4 (1-129)||(23449985-23450113)
chr4 (114-229)||(31301309-31301426)
chr4 (1-114)||(23120273-23120386)
chr4 (1-80)||(31301249-31301328)
chr4 (1-114)||(48338295-48338407)
chr4 (3-129)||(45983339-45983465)
chr4 (9-129)||(41325057-41325172)
chr4 (1-143)||(5122366-5122513)
chr4 (29-94)||(20986403-20986468)
chr4 (1-94)||(32223355-32223448)
chr4 (3-55)||(41260228-41260280)
chr4 (4-94)||(23625937-23626027)
chr4 (43-129)||(48602520-48602606)
chr4 (1-78)||(42198743-42198819)
chr4 (4-94)||(18536680-18536770)
chr4 (62-129)||(29232767-29232834)
chr4 (48-114)||(51907068-51907129)
chr4 (29-114)||(15723863-15723948)
chr4 (99-127)||(28147836-28147864)
chr4 (29-81)||(54274066-54274118)
[»] chr6 (21 HSPs)
chr6 (1-232)||(10590804-10591039)
chr6 (1-235)||(15859679-15859921)
chr6 (9-239)||(10390912-10391143)
chr6 (1-231)||(35040115-35040339)
chr6 (1-191)||(12270510-12270702)
chr6 (1-239)||(5287794-5288033)
chr6 (9-239)||(33550281-33550520)
chr6 (2-239)||(25136726-25136968)
chr6 (46-239)||(13801863-13802066)
chr6 (1-114)||(5874168-5874281)
chr6 (1-114)||(10494397-10494510)
chr6 (9-114)||(13810885-13810990)
chr6 (5-129)||(9686015-9686139)
chr6 (4-129)||(24644954-24645078)
chr6 (1-94)||(892377-892470)
chr6 (42-93)||(30752525-30752576)
chr6 (1-131)||(6266857-6266987)
chr6 (1-127)||(29048080-29048206)
chr6 (166-231)||(10494269-10494334)
chr6 (37-129)||(14940573-14940665)
chr6 (3-94)||(22413793-22413884)
[»] scaffold0059 (1 HSPs)
scaffold0059 (1-239)||(69421-69669)
[»] scaffold0013 (2 HSPs)
scaffold0013 (1-239)||(128590-128838)
scaffold0013 (1-231)||(105983-106223)
[»] scaffold0308 (1 HSPs)
scaffold0308 (1-191)||(5820-6012)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-239)||(40461-40714)
[»] scaffold0204 (2 HSPs)
scaffold0204 (1-114)||(25817-25929)
scaffold0204 (29-85)||(14504-14560)
[»] scaffold0688 (2 HSPs)
scaffold0688 (9-94)||(1120-1204)
scaffold0688 (9-94)||(7689-7773)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 44672742 - 44672961
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    |||||||||||||||||| |||| ||||||||| ||||||||| |||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||    
T  44672742 gcggtgcagtttggttcggttttgagcataaaagtcatccaaatcgcgagataaaaaaacatgcggtttggtttggttcgattgatttttaaaaagtcat 44672841  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44672842 ccaaaccaaaccaatgcggtttggattggttcgatttgtgtggtttatcgcgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 44672941  T
Q  201 ataaacataagatattttat 220  Q
    ||||||||||||||||||||    
T  44672942 ataaacataagatattttat 44672961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 10661107 - 10661345
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10661107 gcggtgcggtttggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 10661206  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 200  Q
    ||||||||||||||||||||||| ||||||||  |||||| | |||||| |||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  10661207 ccaaaccaaaccaatgcggtttgtattggttcggtttgtgcgatttatcgcgagataaaaaaatattacattaactgtaatattgccaacttgttacaaa 10661306  T
Q  201 ataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||||| || ||||||||||| ||||||||||||||    
T  10661307 ataaacataggacattttattttgttgtttatatgataa 10661345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 36910460 - 36910220
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  36910460 gcggtgcggtttggtttgattttgagcataaaagtcatcaaaaccgcgagataaaaaagcatgcggtttagtttggttcggttgatttttaaaaagtcat 36910361  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgaga-tgaaaaaatattacattaactctaatattgccaacttgttgcaa 199  Q
    |||||||||||||| |||| ||||||||||||  ||||||  ||||||| ||||| | |||||||||||||||||||||||||||||||||||||| |||    
T  36910360 ccaaaccaaaccaa-gcggcttggattggttcggtttgtgcagtttatcgcgagattaaaaaaatattacattaactctaatattgccaacttgttacaa 36910262  T
Q  200 aataaacataagatat-----tttattttgctgtttatatgat 237  Q
    |||| ||||| | |||     ||||||||||||||||||||||    
T  36910261 aatagacatacg-tatgaccatttattttgctgtttatatgat 36910220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 14549185 - 14549424
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaacca 108  Q
    ||||| |||| |||| ||||||||| |||||||||||| |||||||||||  ||||||||||||||  ||||||||||||||||||||||||||||||||    
T  14549185 gtttgattcggttttgagcataaaagtcatccaaaccgtgagataaaaaaatatgcggtttggtttgattcggttgatttttaaaaagtcatccaaacca 14549284  T
Q  109 aaccaa----------tgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgca 198  Q
    ||||||          ||||||||||||||||||  |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||    
T  14549285 aaccaaaccaaaccaatgcggtttggattggttcggtttgtgcggtttatcgcgagat-aaaaaatattacattaactctaatattgccaacttgttaca 14549383  T
Q  199 aaataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||||||| || ||||||||||| ||||||||||||||    
T  14549384 aaataaacataggacattttattttgttgtttatatgataa 14549424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 3681895 - 3682116
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaacca 108  Q
    |||||||||| |||| |  |||||| | |||||||||||||||||||||| |||||||||||||||     |||||| |||||||||||||||||||| |    
T  3681895 gtttggttcggttttgaatataaaagttatccaaaccgcgagataaaaaa-catgcggtttggttt-----ggttgacttttaaaaagtcatccaaacta 3681988  T
Q  109 aaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacat 208  Q
    ||||||||||| |||||||||||| ||||||| |||||||| |||||   ||||| |||||||||||| |||||||| ||||||||| ||||||||||||    
T  3681989 aaccaatgcggcttggattggttcgatttgtgcggtttatcgcgaga---aaaaaaattacattaactttaatattgtcaacttgttacaaaataaacat 3682085  T
Q  209 aagatattttattttgctgtttatatgataa 239  Q
    |  | ||||||||||||||||||||||||||    
T  3682086 agaacattttattttgctgtttatatgataa 3682116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 18170147 - 18169909
Alignment:
Q  3 ggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatc- 101  Q
    ||||| |||||||||| |||| | ||||||| ||||| |||||||||||||||||||| ||||||||||||     ||||||| |||||||||||||||     
T  18170147 ggtgcggtttggttcggttttgaacataaaagtcatctaaaccgcgagataaaaaagcgtgcggtttggtt-----cggttgagttttaaaaagtcatca 18170053  T
Q  102 ----caaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaata--ttacattaactctaatattgccaacttgtt 195  Q
        |||||||||||||||||||||||||||||||  |||||| |||||||| |||||| |||||| |  |||||||||||||||| ||||| |||||||    
T  18170052 aaaccaaaccaaaccaatgcggtttggattggttcggtttgtgcggtttatcgcgagataaaaaaaaaaattacattaactctaatgttgcctacttgtt 18169953  T
Q  196 gcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
     |||||||||||||||| ||||||| ||||| ||||||||||||    
T  18169952 acaaaataaacataagacattttatattgctatttatatgataa 18169909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 18633715 - 18633475
Alignment:
Q  3 ggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatcc 102  Q
    ||||| |||||||||| |||| | ||||||| ||||| |||||||||||||||||||| ||||||||||||     ||||||| |||||||||||||||     
T  18633715 ggtgcggtttggttcggttttgaacataaaagtcatctaaaccgcgagataaaaaagcgtgcggtttggtt-----cggttgagttttaaaaagtcatca 18633621  T
Q  103 aaaccaaaccaa------tgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaata---ttacattaactctaatattgccaacttg 193  Q
    ||||||||||||      ||||||||||||||||||  |||||| |||||||| |||||| |||||| |   |||||||||||||||| ||||| |||||    
T  18633620 aaaccaaaccaaaaccaatgcggtttggattggttcggtttgtgcggtttatcgcgagataaaaaaaaaaaattacattaactctaatgttgcctacttg 18633521  T
Q  194 ttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    || |||||||||||||||| ||||||| ||||| ||||||||||||    
T  18633520 ttacaaaataaacataagacattttatattgctatttatatgataa 18633475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 6200972 - 6200733
Alignment:
Q  11 ttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaa----- 105  Q
    |||||||| |||| ||||||||| | |||||||| ||||||||||||| |||||||||| |||| |||  |||||||||||||||||||||||||         
T  6200972 ttggttcggttttgagcataaaagtaatccaaactgcgagataaaaaaacatgcggtttagtttggttaagttgatttttaaaaagtcatccaaaatcaa 6200873  T
Q  106 ------ccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaa 199  Q
          ||||| |||||||||||||||||||||  | |||| | |||||| | |||| |||||||||||||||||||||||||||||||||||||| |||    
T  6200872 accaaaccaaagcaatgcggtttggattggttcggtatgtgcgctttatcgcaagataaaaaaatattacattaactctaatattgccaacttgtttcaa 6200773  T
Q  200 aataaacataagatattttattttgctgtttatatgataa 239  Q
    |||||||||| || ||||  ||||| ||||||||||||||    
T  6200772 aataaacataggacatttcgttttgttgtttatatgataa 6200733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 3006701 - 3006499
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  3006701 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 3006602  T
Q  101 ccaaaccaaa----------ccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgcca 188  Q
    ||||||||||          ||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| ||||||||||||||||||||||||    
T  3006601 ccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgcca 3006502  T
Q  189 act 191  Q
    |||    
T  3006501 act 3006499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 5803372 - 5803173
Alignment:
Q  4 gtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatcca 103  Q
    |||| |||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5803372 gtgcggtttggttcgatttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatcca 5803273  T
Q  104 aaccaaa----------ccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgccaact 191  Q
    |||||||          ||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| |||||||||||||||||| ||||||||    
T  5803272 aaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatactgccaact 5803173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 33068221 - 33068454
Alignment:
Q  3 ggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatcc 102  Q
    ||||| |||||||||| |||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  33068221 ggtgcggtttggttcggttttgagcataaaagtcatccaaaccgcaagataaaaaagcatgcggtttggtttggttcagttgatttttaaaaagtcatcc 33068320  T
Q  103 aaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagat-gaaaaaatattacattaactctaatattgccaacttgttgcaaaa 201  Q
    |||||||| |||  |  |   | ||||    ||||||| |||| ||  ||||||  ||||||||||||||||||||||||||||||||||| || ||| |    
T  33068321 aaaccaaatcaaaccaatgcaggttgg----atttgtgcggttaattgcgagataaaaaaaatattacattaactctaatattgccaacttattacaaga 33068416  T
Q  202 taaacataagatattttattttgctgtttatatgataa 239  Q
    |||| ||| || |||||||||||||||| | |||||||    
T  33068417 taaaaatatgacattttattttgctgttaacatgataa 33068454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 30392152 - 30392277
Alignment:
Q  114 atgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacataagat 213  Q
    ||||||||||| ||||||    ||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||        
T  30392152 atgcggtttggtttggtttggcttgtgcggtttatcgcgagataaaaaaatattacattaactctaatattgccaacttgttacaaaataaacatagagc 30392251  T
Q  214 attttattttgctgtttatatgataa 239  Q
    ||||||||||| ||||||||||||||    
T  30392252 attttattttgttgtttatatgataa 30392277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 36827775 - 36827678
Alignment:
Q  142 ggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| || ||||||||||| ||||||||||||||    
T  36827775 ggtttatcgcgagataaaaaaatattacattaactctaatattgccaacttgctacaaaataaacataggacattttattttgttgtttatatgataa 36827678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 30392104 - 30392165
Alignment:
Q  13 ggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttt 74  Q
    |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30392104 ggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggttt 30392165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 44336725 - 44336819
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaag-catgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||| |||||||||| |||| ||  ||||| |||||| |||||| ||||||||||  ||||||||||||||| |||||||||| ||||||||    
T  44336725 gcggtgcggtttggttcggttttgagtttaaaagtcatccgaaccgcaagataaaaaaaacatgcggtttggtttggttcggttgacttttaaaa 44336819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 7428534 - 7428434
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattg 128  Q
    ||||| |||||  ||||||  |||||||| |||||||||||||||| |||||||||| ||||||||    || | |||||||| ||||||||||||||||    
T  7428534 taaaagtcatctgaaccgcatgataaaaatgcatgcggtttggtttggttcggttgacttttaaaataaaattcgaaccaaactaatgcggtttggattg 7428435  T
Q  129 g 129  Q
    |    
T  7428434 g 7428434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 38926529 - 38926424
Alignment:
Q  17 cgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatg 116  Q
    ||||||| ||||||||| |||||| |||||||| |||||||| |||||||||          ||||||| ||||||||||||||   |||||||||||||    
T  38926529 cgattttgagcataaaagtcatcctaaccgcgaaataaaaaaacatgcggtt----------cggttgacttttaaaaagtcatttgaaccaaaccaatg 38926440  T
Q  117 cggtttggattggttc 132  Q
     |||||||||||||||    
T  38926439 tggtttggattggttc 38926424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 11218905 - 11218996
Alignment:
Q  3 ggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||| ||||||||||||||| ||  ||||| |||||| || ||| ||||||| ||| ||||| |||||||| ||| |||||| ||||||||    
T  11218905 ggtgcggtttggttcgattttgaggctaaaagtcatccgaaacgcaagataaataagtatgcgatttggtttggtttggttgacttttaaaa 11218996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 45366265 - 45366397
Alignment:
Q  5 tgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatc--- 101  Q
    ||||||||||| || |||| ||  ||||| ||||   |||||| |||||||||||||| ||||||| ||| |||||||||  |||||||| |  | |       
T  45366265 tgcagtttggtccggttttgaggttaaaagtcatatgaaccgcaagataaaaaagcatacggtttgatttggttcggttgccttttaaaatgaaaaccga 45366364  T
Q  102 --caaaccaaaccaatgcggtttggattggttc 132  Q
      |||||||||||||||| ||||||||||||||    
T  45366365 atcaaaccaaaccaatgcagtttggattggttc 45366397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 8036024 - 8036079
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttg 84  Q
    ||||| |||||  |||||| |||||||||||||||| ||||||||| |||||||||    
T  8036024 taaaagtcatctgaaccgcaagataaaaaagcatgcagtttggtttggttcggttg 8036079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 28073292 - 28073185
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattg 128  Q
    ||||| |||||  |||||| | |||||||| |||| ||||| |||| |||| ||||| |||||||| |  | || ||||||||||||| ||||||||||     
T  28073292 taaaagtcatctgaaccgcaatataaaaaaacatgtggtttagtttggttcagttgacttttaaaatgaaaaccgaaccaaaccaatgtggtttggatta 28073193  T
Q  129 gttcaatt 136  Q
    ||| ||||    
T  28073192 gtttaatt 28073185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 31497710 - 31497656
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggtt 83  Q
    ||||| |||||| |||||| ||||||||||||| |||||||||||| ||| ||||    
T  31497710 taaaagtcatccgaaccgcaagataaaaaagcacgcggtttggtttggtttggtt 31497656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 12660321 - 12660240
Alignment:
Q  65 ggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcaatttgtgtggttt 146  Q
    |||||||||| |||||||||| ||| ||||    |||| |||||||| ||||||||||||||||| |   ||||||||||||    
T  12660321 ggtttggtttggttcggttgagtttaaaaataaaatccgaaccaaacaaatgcggtttggattggattggtttgtgtggttt 12660240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 33565908 - 33566003
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaa--gcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||||||||||||||| | |||| ||  ||||| ||||   |||||| ||||||||||  | |||||||||||||| |||||||||| || |||||    
T  33565908 gcggtgcagtttggtttggttttgaggctaaaagtcatttgaaccgcaagataaaaaaaagtatgcggtttggtttggttcggttgacttctaaaa 33566003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 25298380 - 25298139
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    |||||||||||||||||| |||| ||||||||| ||||| |||| ||||||||||||| ||| ||||| ||||| |||||||||||||||||||||||||    
T  25298380 gcggtgcagtttggttcggttttgagcataaaagtcatcgaaactgcgagataaaaaaacattcggttcggtttggttcggttgatttttaaaaagtcat 25298281  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 200  Q
    ||||||||||| ||| ||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25298280 ccaaaccaaactaatacggtttggattggttcggtttgtgcggtttatcgcgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 25298181  T
Q  201 ataaacataagatattttattttgctgtttatatgataatat 242  Q
    ||||||||| |||||||||||||| |||||||||||||||||    
T  25298180 ataaacataggatattttattttgttgtttatatgataatat 25298139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 44979898 - 44979661
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44979898 gcggtgcggtttggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 44979799  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 200  Q
    ||||||||||||||||||||||||||||||||   ||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||| || ||||    
T  44979798 ccaaaccaaaccaatgcggtttggattggttcggcttgtgcggtttatcgcgagat-aaaaaatattacattaactctaatattgccaacttattacaaa 44979700  T
Q  201 ataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||||| |  ||||||||||| ||||||||||||||    
T  44979699 ataaacatagggcattttattttgttgtttatatgataa 44979661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 239
Target Start/End: Original strand, 11375867 - 11376093
Alignment:
Q  13 ggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaacc 112  Q
    |||||| |||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  11375867 ggttcggttttaagcataaaagtcatccaaaccgcgagataaaaaaacatgcagtttggtttggttcggttgatttttaaaaagtcatccaaaccaaacc 11375966  T
Q  113 aatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacataaga 212  Q
    ||||||| |||||||| |||  |||||| |||||||| | |||| |||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||    
T  11375967 aatgcggattggattgattcgttttgtgcggtttatcgcaagataaaaaaatatttcattaactctaatattgtcaacttgttacaaaataaacataaga 11376066  T
Q  213 tattttattttgctgtttatatgataa 239  Q
     ||||||||||| ||||||||||||||    
T  11376067 cattttattttgatgtttatatgataa 11376093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 42785758 - 42785523
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||| || |||||||||||| |||||||||||||| ||||| |||||||||||||| ||||    
T  42785758 gcggtgcggtttggttcgattttgagcataaaagtcatccaaatcgtgagataaaaaaggatgcggtttggtttggttcgcttgatttttaaaaactcat 42785659  T
Q  101 -----ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgtt 195  Q
         |||||||||||||||||||||||||||||||| |||  || |||||||| |||||| |||||||||||||||||||||||||||||||| || ||    
T  42785658 tcaaaccaaaccaaaccaatgcggtttggattggttcgattgatgcggtttatcgcgagataaaaaaatattacattaactctaatattgccaaattatt 42785559  T
Q  196 gcaaaataaacataagatattttattttgctgttta 231  Q
     ||||||||||||| || ||||||||||| ||||||    
T  42785558 acaaaataaacatatgacattttattttgttgttta 42785523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 44035267 - 44035506
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaa-gcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaacc 107  Q
    |||||||||| |||| ||||||||| ||||||||||||| | |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44035267 gtttggttcggttttgagcataaaagtcatccaaaccgcaaaataaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaacc 44035366  T
Q  108 aaaccaa---------tgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgca 198  Q
    |||||||         || ||||| |||||||||  ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||    
T  44035367 aaaccaaccaaaccaatggggttttgattggttcggtttgtgtggtttatcgcgagat-aaaaaatattacattaactctaatattgccaacttgttaca 44035465  T
Q  199 aaataaacataagatattttattttgctgtttatatgataa 239  Q
    |||||| | || || ||||||||||| ||||||||||||||    
T  44035466 aaataatcgtaggacattttattttgttgtttatatgataa 44035506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 18356857 - 18357096
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    |||||||  ||||||||| |||| ||||||||| ||||| |||| |||||||||| ||||||||||| ||| || ||| | || ||||||||||||||||    
T  18356857 gcggtgcgatttggttcggttttgagcataaaagtcatctaaactgcgagataaagaagcatgcggtatggattggtttgattaatttttaaaaagtcat 18356956  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagat-gaaaaaatattacattaactctaatattgccaacttgttgcaa 199  Q
     |||||||||||||||||| ||||||||||||  ||  || |||||||| ||||||  |||||||||||||||||||||||||||||||||||||| |||    
T  18356957 tcaaaccaaaccaatgcggcttggattggttctgttgatgcggtttatcgcgagataaaaaaaatattacattaactctaatattgccaacttgttacaa 18357056  T
Q  200 aataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||||||||| ||||||||||||| |||| |||||||    
T  18357057 aataaacataagacattttattttgctttttacatgataa 18357096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 9811344 - 9811536
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||    
T  9811344 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaaacatgcggtttggtttggttcggttgatttttaaaaagtcat 9811443  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgccaact 191  Q
    ||||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  |||||  ||||||||||||||||||||||||||    
T  9811444 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaatttacattaactctaatattgccaact 9811536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 19937253 - 19937006
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||| |  ||| ||||||||| |||||||||||||||||||||||| |||| |||||||||| ||||| |||||||||||||||||||    
T  19937253 gcggtgcggtttggttaggatttgagcataaaagtcatccaaaccgcgagataaaaaaacatg-ggtttggtttggttcgattgatttttaaaaagtcat 19937155  T
Q  101 ccaaaccaaaccaa----------tgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaac 190  Q
    ||||| ||||||||          |||||||||||||||||   | |||| ||||||||  |||||  ||||||||||||||||||||||||||||||||    
T  19937154 ccaaatcaaaccaaagcaaaccaatgcggtttggattggtttggtgtgtgcggtttatcgtgagatacaaaaatattacattaactctaatattgccaac 19937055  T
Q  191 ttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||| |||||||||||||||| ||||||||||| ||||||||||||||    
T  19937054 ttgttacaaaataaacataagacattttattttgttgtttatatgataa 19937006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 17916980 - 17916746
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    |||||||  ||||||||  |||| ||||||||| | ||||||||   ||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  17916980 gcggtgcgatttggttcagttttgagcataaaagttatccaaactttgagataaaaaaacatgcggtttggtttggttcggttgatttttaaaaagtcat 17916881  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagat-gaaaaaatattacattaactctaatattgccaacttgttgcaa 199  Q
    |||||     ||||||||| ||||||||||||  ||||||  ||||||| ||||||  |||||||||||| ||||||||||| ||||||||||||| |||    
T  17916880 ccaaa-----ccaatgcggcttggattggttcggtttgtgcagtttatcgcgagataaaaaaaatattacgttaactctaatgttgccaacttgttacaa 17916786  T
Q  200 aataaacataagatattttattttgctgtttatatgataa 239  Q
    |||||||||| || |||||||| || ||||||||||||||    
T  17916785 aataaacataggacattttattatgttgtttatatgataa 17916746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 34910264 - 34910505
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagca----tgcggtttggttttgttcggttgatttttaaaaag 96  Q
    |||||||||||||||||  |||| |||||||||||||| |||||||||||||||||||  |    |||||||||||||||||     |||||||||||||    
T  34910264 gcggtgcagtttggttcagttttgagcataaaaatcattcaaaccgcgagataaaaaaaaacatatgcggtttggttttgtt-----gatttttaaaaag 34910358  T
Q  97 tcatc---caaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaat-attacattaactctaatattgccaactt 192  Q
    |||||   |||||||||||||||||| ||||||| ||||  |||||  |||||||  |||||| ||||||  ||||||||||||||||||||||||| ||    
T  34910359 tcatcattcaaaccaaaccaatgcggcttggattagttcggtttgtacggtttattgcgagataaaaaaaacattacattaactctaatattgccaattt 34910458  T
Q  193 gttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    ||| ||||||||||||| || ||||||||||| ||||||||||||||    
T  34910459 gttacaaaataaacataggacattttattttgttgtttatatgataa 34910505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 36413769 - 36413567
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  36413769 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 36413670  T
Q  101 ccaaaccaaa----------ccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgcca 188  Q
    ||||||||||          ||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| ||||||||||||||||||||||||    
T  36413669 ccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgcca 36413570  T
Q  189 act 191  Q
    |||    
T  36413569 act 36413567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 16578597 - 16578791
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat-------- 100  Q
    |||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||            
T  16578597 gtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcgattgatttttaaaaagtcatccaaacca 16578696  T
Q  101 --ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgccaact 191  Q
      ||||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| |||||||||||||||||||||||||||    
T  16578697 aaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgccaact 16578791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 41461035 - 41461167
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgattttta----aaaag 96  Q
    |||||||||||||||||| |||| ||  ||||| ||| || |||||| || |||||||| |||||||||||||| |||||||||| |||||    ||||     
T  41461035 gcggtgcagtttggttcggtttttagactaaaagtcaaccgaaccgcaagctaaaaaagtatgcggtttggtttggttcggttgacttttaaaataaaat 41461134  T
Q  97 tc-atccaaaccaaaccaatgcggtttggattg 128  Q
    || | ||||||||||||||||||||||||||||    
T  41461135 tcgaaccaaaccaaaccaatgcggtttggattg 41461167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 15320708 - 15320586
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| ||||||||||||||| ||  ||||| |||||||||||| ||  ||||||||||||| ||| ||||| |||| ||||||||||||||    ||    
T  15320708 gcggtgcggtttggttcgattttgaggctaaaagtcatccaaaccgtgaagtaaaaaagcatgcagttaggtttggttcagttgatttttaaaataaaat 15320609  T
Q  101 ccaaaccaaaccaatgcggtttg 123  Q
    ||||||||||| |||| ||||||    
T  15320608 ccaaaccaaactaatgtggtttg 15320586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 146
Target Start/End: Original strand, 1330971 - 1331108
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaacca 108  Q
    ||||| |||| |||||||   ||||||||||| |||| | || ||||||||||||| | ||||||| |||||||||| ||||||||    ||||||||||    
T  1330971 gtttgattcggttttaagacgaaaaatcatccgaaccacaaggtaaaaaagcatgcagattggtttggttcggttgacttttaaaataaaatccaaacca 1331070  T
Q  109 aaccaatgcggtttggattggttcaatttgtgtggttt 146  Q
    |||||||| ||||||| |||| ||| || ||| |||||    
T  1331071 aaccaatgtggtttgggttggatcagttggtgcggttt 1331108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 17762723 - 17762788
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||| ||| || ||||||||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  17762723 taaaagtcaaccgaaccgcgagataaaaaaacatgcggtttggtttggttcggttgacttttaaaa 17762788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 27301609 - 27301520
Alignment:
Q  5 tgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||||||||||||| |||| ||  |||||  |||||  ||||| ||||||||||||||||||||||||||  ||||||||| ||||||||    
T  27301609 tgcagtttggttcggttttgagattaaaagccatccggaccgcaagataaaaaagcatgcggtttggtttgattcggttgacttttaaaa 27301520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 12041710 - 12041598
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaacca 108  Q
    |||||||||| |||| ||  ||||| |||||  |||||  |||||||||| ||||||||||| ||| |||||||||| ||||||||    |||| |||||    
T  12041710 gtttggttcggttttgaggctaaaagtcatctgaaccgtaagataaaaaaacatgcggtttgatttggttcggttgacttttaaaataaaatccgaacca 12041611  T
Q  109 aaccaatgcggtt 121  Q
    |||||||||||||    
T  12041610 aaccaatgcggtt 12041598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 5862760 - 5862667
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||| ||||| || |||||| ||  ||||| ||||| ||| ||| | ||||||||| |||||||||||||| |||||||||| ||||||||    
T  5862760 gcggtgcggtttgatttgattttgagggtaaaagtcatctaaatcgcaaaataaaaaagtatgcggtttggtttggttcggttgacttttaaaa 5862667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 12884484 - 12884557
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttt 74  Q
    ||||||| ||||||||||||||||||  ||||| |||||||||| ||  | |||||||| ||||||||||||||    
T  12884484 gcggtgcggtttggttcgattttaaggttaaaagtcatccaaactgcatggtaaaaaagtatgcggtttggttt 12884557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 13193864 - 13193945
Alignment:
Q  13 ggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||||| |||||||  ||||||||||   |||||  |||||||||||||| | ||||||||| |||||||||| ||||||||    
T  13193864 ggttcggttttaaggctaaaaatcatttgaaccgtaagataaaaaagcatactgtttggtttggttcggttgacttttaaaa 13193945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 28790487 - 28790572
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaa 114  Q
    ||||| |||||  |||||| |||||||||||||||||||||| ||   ||||||||| ||||||||    ||||||||||||||||    
T  28790487 taaaagtcatctgaaccgcaagataaaaaagcatgcggtttgattagattcggttgacttttaaaataaaatccaaaccaaaccaa 28790572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 44085495 - 44085571
Alignment:
Q  53 aaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 129  Q
    |||||||||||||||||||||| |||||||||| ||| ||||    |||  || |||||||||||||||||| ||||    
T  44085495 aaaaaagcatgcggtttggtttggttcggttgactttaaaaataaaatctgaatcaaaccaatgcggtttgggttgg 44085571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 36963977 - 36964025
Alignment:
Q  25 agcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggtt 73  Q
    |||||||||||||||| |||||||| ||||||||| ||| |||| ||||    
T  36963977 agcataaaaatcatcctaaccgcgaaataaaaaagtatgtggttcggtt 36964025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 6004508 - 6004279
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaacca 108  Q
    |||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6004508 gtttggttcggttttcagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaacca 6004409  T
Q  109 aaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacat 208  Q
    |||||||||||||||||||| |||  |||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  6004408 aaccaatgcggtttggattgattcggtttgtgcggtttatcgcgagat-aaaaaatattacattaactctaatattgccaacttattacaaaataaacat 6004310  T
Q  209 aagatattttattttgctgtttatatgataa 239  Q
    | |  ||||||||||| ||||||||||||||    
T  6004309 agggcattttattttgttgtttatatgataa 6004279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 21586971 - 21586732
Alignment:
Q  2 cggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatc 101  Q
    ||||||||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||| |||||||||  ||| |||||||||||||||||||||    
T  21586971 cggtgcagtttggttcggttttgagcttaaaagtcatccaaaccgcgagataaaaaagcatgcagtttggtttgattcagttgatttttaaaaagtcatc 21586872  T
Q  102 caaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagat-gaaaaaatattacattaactct-aatattgccaacttgttgcaa 199  Q
    |||||||||||||||| | ||||||||||||  ||||||  ||||||| ||||||  |||||| |||||||||||||| ||||||||||||||||| |||    
T  21586871 caaaccaaaccaatgcagcttggattggttcggtttgtgcagtttatcgcgagataaaaaaaaaattacattaactctaaatattgccaacttgttacaa 21586772  T
Q  200 aataaacataagatattttattttgctgtttatatgataa 239  Q
    |||||||||| || ||||||||||| ||||||||||||||    
T  21586771 aataaacataggacattttattttgttgtttatatgataa 21586732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 32880254 - 32880493
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| ||||||||||  ||| ||||||||| || |||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||    
T  32880254 gcggtgcggtttggttcggctttgagcataaaagtcctccaaaccgcgagataaaaaagcatgtggtttgatttggttcggttgatttttaaaaagtcat 32880353  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagat-gaaaaaatattacattaactctaatattgccaacttgttgcaa 199  Q
     |||||||||||||| ||||||| ||||||||  |||||| |||||||| ||||||  |||||||||||||||||||||||||||| |||||||||  ||    
T  32880354 acaaaccaaaccaatacggtttgaattggttcggtttgtgcggtttatcgcgagataaaaaaaatattacattaactctaatattgtcaacttgttataa 32880453  T
Q  200 aataaacataagatattttattttgctgtttatatgataa 239  Q
    |||||||||| || ||||||||||||||||||||| ||||    
T  32880454 aataaacataggacattttattttgctgtttatataataa 32880493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 50562699 - 50562496
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| ||||||||||||||||||||||||| ||||| ||||  ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||    
T  50562699 gcggtgcggtttggttcgattttaagcataaaagtcatctaaactacgagataaaaaagcatgtggtttggtttggttcggttgatttttaaaaattcat 50562600  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 200  Q
    || || ||||||||| ||| ||||||||||||  |||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||| || ||||    
T  50562599 cccaatcaaaccaattcggcttggattggttcggtttgtgcggtttatcgcgagataaaaaaatattacattaactctaatattgccaacttattacaaa 50562500  T
Q  201 ataa 204  Q
    ||||    
T  50562499 ataa 50562496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 34794548 - 34794739
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||    
T  34794548 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcgatttggtttggttcggttgatttttaaaaagtcat 34794647  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaa-aaaatattacattaactctaatattgccaact 191  Q
    ||||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| || |||| |||||||||||||||||||||||||||    
T  34794648 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaattacattaactctaatattgccaact 34794739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 9827907 - 9827672
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| | |||||||| |||||||||||||| ||||||||||| ||||||||  |||||||||  ||| ||| ||| |||||||||||||||||||||    
T  9827907 gcggtgcggcttggttcggttttaagcataaaagtcatccaaaccacgagataattaagcatgcgacttgatttggttaggttgatttttaaaaagtcat 9827808  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 200  Q
    ||||||||||||||| ||| ||||||||||||| || ||| |||||||| ||||||  ||||| |||||||||||||||||||||| |||||| | ||||    
T  9827807 ccaaaccaaaccaatacggcttggattggttcagttggtgcggtttatcgcgagat--aaaaaaattacattaactctaatattgcgaacttgatacaaa 9827710  T
Q  201 ataaacataagatattttattttgctgtttatatgata 238  Q
    ||||||||| || ||||||||||| |||||| ||||||    
T  9827709 ataaacataggacattttattttgttgtttacatgata 9827672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 51149786 - 51149594
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||    
T  51149786 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtgat 51149687  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgccaact 191  Q
    ||||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| |||||||||||||||||||||||||||    
T  51149686 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgccaact 51149594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 35402334 - 35402137
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||| ||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||    
T  35402334 gcggtgcggtttggttcggtttcaagcataataatcatccaaatcgcgagagaaaaaaacatgcggtttggtttggttcggttgatttttaaaaagtcat 35402235  T
Q  101 ccaaaccaaa-----ccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgccaact 191  Q
    ||||||||||     ||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| |||||||||||||||||||||||||||    
T  35402234 ccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgccaact 35402137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 35532262 - 35532043
Alignment:
Q  4 gtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatcca 103  Q
    ||||||||||||||| |||| ||||||||| |||||||||  ||||||||||||||||||||||||||||          |||||||||||| |||||||    
T  35532262 gtgcagtttggttcggttttgagcataaaagtcatccaaattgcgagataaaaaagcatgcggtttggtt----------gatttttaaaaattcatcca 35532173  T
Q  104 aaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaata 203  Q
    ||||||     ||||| |||||||| ||   |||||| |||||||| |||||| |||||||||| |||||||||||||||||||||||| || |||||||    
T  35532172 aaccaa-----tgcggattggattgatttggtttgtgcggtttatcgcgagat-aaaaaatatttcattaactctaatattgccaacttattacaaaata 35532079  T
Q  204 aacataagatattttattttgctgtttatatgataa 239  Q
    ||||||||| ||||||||||| ||||||||||||||    
T  35532078 aacataagacattttattttgatgtttatatgataa 35532043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 4669776 - 4669574
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  4669776 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 4669677  T
Q  101 ccaaaccaaa----------ccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgcca 188  Q
    || |||||||          ||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| ||||||||||||||||||||||||    
T  4669676 ccgaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgcca 4669577  T
Q  189 act 191  Q
    |||    
T  4669576 act 4669574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 43030389 - 43030624
Alignment:
Q  20 ttttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaac------------- 106  Q
    |||| ||||||||| |||| | || ||| ||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||                 
T  43030389 ttttgagcataaaagtcatgcgaatcgcaagataaaaaagtatgcagtttggtttggttcggttgatttttaaaaagtcatccaaactaaaccaaaccaa 43030488  T
Q  107 --caaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataa 204  Q
      ||||||||||| ||||| ||||||||  ||||||||||||||| |||||| |||||||||||||||||||  ||||||||||| ||||| ||||||||    
T  43030489 accaaaccaatgcagtttgaattggttcggtttgtgtggtttatcgcgagat-aaaaaatattacattaactacaatattgccaatttgttacaaaataa 43030587  T
Q  205 acataag--atattttattttgctgtttatatgataa 239  Q
    |||||||  || |||||||||| ||||||||||||||    
T  43030588 acataagacattttttattttgttgtttatatgataa 43030624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 39097907 - 39098135
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgc----gagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaa 104  Q
    ||||||||||||||| ||||||||| |||||||||| ||    ||||||||||| ||||||||||| ||| |||| |||||||||||||||||| |||||    
T  39097907 gtttggttcgattttgagcataaaagtcatccaaactgcatgcgagataaaaaa-catgcggtttgatttggttcagttgatttttaaaaagtcgtccaa 39098005  T
Q  105 accaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataa 204  Q
    |||||     |||   ||||||||||||   ||||   ||||||| |||||| ||||||||||||| ||||| ||| |||| ||||||||| ||||||||    
T  39098006 accaa-----tgcatattggattggttcgggttgtacagtttatcgcgagataaaaaaatattacaataactttaacattggcaacttgttacaaaataa 39098100  T
Q  205 acataagatattttattttgctgtttatatgataa 239  Q
    ||||| || ||||||||||| ||||||||| ||||    
T  39098101 acatatgacattttattttgttgtttatataataa 39098135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 10369165 - 10369365
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| |||||||||||| |||||| |||||| ||||||||||||||  ||||| |||||||||||||||||||    
T  10369165 gcggtgcggtttggttcggtttcaagcataataatcatccaaactgcgagagaaaaaaacatgcggtttggttcggttcgtttgatttttaaaaagtcat 10369264  T
Q  101 ----------ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgcca 188  Q
              ||||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| ||||||||||| ||||||||||||    
T  10369265 ccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaacactaatattgcca 10369364  T
Q  189 a 189  Q
    |    
T  10369365 a 10369365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 48032931 - 48032839
Alignment:
Q  47 cgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcaatttgtg 140  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  48032931 cgagataaaaaagcatgcggtttggttg-gttcggttgatttttaaaaattcatccaaaccaaaccaatgcggtttggattggttcagtttgtg 48032839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 27642151 - 27642054
Alignment:
Q  142 ggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    |||||||| | |||| ||||||||| |||||||||||||||||| ||||||||| ||||||| ||||| || ||||||||||||||||||||||||||    
T  27642151 ggtttatcgcaagataaaaaaatatcacattaactctaatattgtcaacttgttacaaaatagacataggacattttattttgctgtttatatgataa 27642054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 191
Target Start/End: Original strand, 33360968 - 33361109
Alignment:
Q  62 tgcggtttggttttgttcggttgatttttaaaaagtcatccaa----------accaaaccaatgcggtttggattggttcaatttgtgtggtttatcac 151  Q
    ||||||||||||| |||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||| ||  || |||| ||| |    
T  33360968 tgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgc 33361067  T
Q  152 gagatga--aaaaatattacattaactctaatattgccaact 191  Q
    ||||| |  ||||| |||||||||||||||||||||||||||    
T  33361068 gagataaataaaaaaattacattaactctaatattgccaact 33361109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 26292085 - 26291992
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||| |||||||||||||||||   ||||||||||||||||||| ||||||||||   ||||||||| ||| |||||||||||||||||||    
T  26292085 gcggtgcggtttggttcgattttaaaattaaaaatcatccaaaccgcaagataaaaaattgtgcggtttgctttggttcggttgatttttaaaa 26291992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 33002643 - 33002712
Alignment:
Q  168 acattaactctaatattgccaacttgttgcaaaataaacataagatattttattttgctgtttatatgat 237  Q
    |||||||||||||||||| ||||||||| ||||||||||| | |||||||||||||| ||||||||||||    
T  33002643 acattaactctaatattgtcaacttgttacaaaataaacacaggatattttattttgttgtttatatgat 33002712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 54121974 - 54122067
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||||||||| ||||||||| ||  ||||| |||||| |||||  ||||||||||| |||||||||||||| |||||||||| ||||||||    
T  54121974 gcggtgcagtttgattcgattttgaggttaaaagtcatccgaaccgtaagataaaaaagtatgcggtttggtttggttcggttgacttttaaaa 54122067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 55467771 - 55467621
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaa---aaagt 97  Q
    ||||||| |||||||||| |||| ||  ||||| |||||| ||| || ||||||| ||| |||||||||||||| |||||||||| ||||||   ||| |    
T  55467771 gcggtgcggtttggttcggttttgaggctaaaagtcatccgaactgcaagataaataagtatgcggtttggtttggttcggttgacttttaaaataaaat 55467672  T
Q  98 c--atccaaaccaaaccaatgcggtttggattggttcaatttgtgtggttt 146  Q
    |  | ||||| ||||||||||||||||||||||| ||| || ||| |||||    
T  55467671 ccgaaccaaatcaaaccaatgcggtttggattggatcagttggtgcggttt 55467621  T

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Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 26758186 - 26758270
Alignment:
Q  10 tttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||||| |||||||  ||||| |||||| |||||| ||||||| ||| || ||||||||||| |||||||||| ||||||||    
T  26758186 tttggttcggttttaaggttaaaagtcatccgaaccgcaagataaataagtatacggtttggtttggttcggttgacttttaaaa 26758270  T

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Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 17144855 - 17144766
Alignment:
Q  4 gtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||| |||||||||| |||| ||  ||||| ||||||||||||| |||| |||||| |||||| ||||||| |||||||||| ||||||||    
T  17144855 gtgcggtttggttcggttttgaggctaaaagtcatccaaaccgcaagat-aaaaagtatgcggattggtttggttcggttgacttttaaaa 17144766  T

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Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 40483879 - 40483969
Alignment:
Q  4 gtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||| ||||| |||||||||||   |||||||||| | |||| | ||||||||| |||||||||||||||| |||| ||||| ||||||||    
T  40483879 gtgcggtttgattcgattttaaagttaaaaatcattcgaaccacaagataaaaatgcatgcggtttggtttggttcagttgacttttaaaa 40483969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 52631999 - 52632120
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccg-cgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaacc 107  Q
    |||||||||| |||||||  ||||| |||||||||| | | |||||||||| || ||||||||||||  ||||||| | ||||||||    |||| ||||    
T  52631999 gtttggttcgtttttaaggctaaaagtcatccaaacagacaagataaaaaaacacgcggtttggtttgattcggttaacttttaaaatacaatccgaacc 52632098  T
Q  108 aaaccaatgcggtttggattgg 129  Q
    |||||||||| |||||| ||||    
T  52632099 aaaccaatgcagtttgggttgg 52632120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 20846423 - 20846518
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaa--gcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||||||||||||||||| |||  ||  ||||| |||||| |||||| ||||||||||   |||||| |||||||| |||||||||| ||||||||    
T  20846423 gcggtgcagtttggttcggtttcgagagtaaaagtcatccgaaccgcaagataaaaaaatacatgcgctttggtttggttcggttgacttttaaaa 20846518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 22257627 - 22257535
Alignment:
Q  2 cggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||||| || ||||||| |||| ||  ||||| |||||| |||||||||||||| ||| |||||||||| ||| |||| ||||| ||||||||    
T  22257627 cggtgctgtgtggttcggttttgagactaaaagtcatccgaaccgcgagataaataagtatgcggtttgatttagttcagttgacttttaaaa 22257535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 38652089 - 38651990
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattg 128  Q
    ||||| |||||| || ||| ||||||||||  |||||||||||||| |||||||||| ||| ||||    ||||||||||||| |||||||||||| |||    
T  38652089 taaaagtcatccgaatcgcaagataaaaaat-atgcggtttggtttggttcggttgactttaaaaataatatccaaaccaaactaatgcggtttgggttg 38651991  T

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Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 136
Target Start/End: Original strand, 20038443 - 20038478
Alignment:
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatt 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  20038443 ccaaaccaaaccaatgcggtttggattggttcaatt 20038478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 45915298 - 45915205
Alignment:
Q  35 tcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 129  Q
    |||| |||||||| |||| || ||| |||||||||||||| |||||||||| ||||||||    | |||||||| |||||||||||||| |||||    
T  45915298 tcattcaaaccgcaagatgaataagtatgcggtttggtttggttcggttgacttttaaaaccaaa-ccaaaccagaccaatgcggtttgaattgg 45915205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 10481773 - 10481681
Alignment:
Q  2 cggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||||||||||||| |||| || |||||| ||||   |||| | |||||||||  || || ||||||||| |||||||||| ||||||||    
T  10481773 cggtgcagtttggttcggttttgaggataaaagtcattggaaccacaagataaaaagacacgcagtttggtttggttcggttgacttttaaaa 10481681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 37044875 - 37044943
Alignment:
Q  2 cggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttg 70  Q
    |||||| |||||||||| |||| ||   |||| ||||||||||||| |||||||||| |||||||||||    
T  37044875 cggtgcggtttggttcggttttgagagaaaaagtcatccaaaccgcaagataaaaaaacatgcggtttg 37044943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 42363313 - 42363261
Alignment:
Q  42 aaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||||| |||||||||| ||||||||||||||| |||||||||| ||| ||||    
T  42363313 aaccgcaagataaaaaatcatgcggtttggtttggttcggttgactttaaaaa 42363261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 51191699 - 51191794
Alignment:
Q  42 aaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaacca-----atgcggtttggattggttc 132  Q
    |||||| ||||||||||  |||||||||||||| |||||||||  |||||||| |  | || ||||||||||     |||||||||||||||||||    
T  51191699 aaccgcaagataaaaaaatatgcggtttggtttggttcggttggattttaaaatgaaaaccgaaccaaaccaaaccgatgcggtttggattggttc 51191794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 2832500 - 2832446
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggtt 83  Q
    ||||| |||||| |||| | |||||||||||||||||||||||||| ||| ||||    
T  2832500 taaaagtcatccgaaccacaagataaaaaagcatgcggtttggtttggtttggtt 2832446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 27054861 - 27054622
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||| | |||| |||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  27054861 gcggtgcggtttggtttggttttgagcaaaaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagccat 27054762  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagat-gaaaaaatattacattaactctaatattgccaacttgttgcaa 199  Q
    ||||||||||||||||||||||||||||||||  |||||| |||||||||||||||  ||||||||||||||||||||||||||| |||||||||| |||    
T  27054761 ccaaaccaaaccaatgcggtttggattggttcggtttgtgcggtttatcacgagataaaaaaaatattacattaactctaatatttccaacttgttacaa 27054662  T
Q  200 aataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||||||  | ||||||||||| ||||||||||||||    
T  27054661 aataaacatataacattttattttgatgtttatatgataa 27054622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 32823559 - 32823784
Alignment:
Q  2 cggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatc 101  Q
    |||||| ||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  32823559 cggtgctgtttggttcgatttttagcataaaagtcatccaaatcgcgagataaaaaagcatgcggtttggttg-gttcggttgatttttaaaaagtcatc 32823657  T
Q  102 caaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaa 201  Q
    ||||||||| |||||||||||||||||||||  |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  32823658 caaaccaaatcaatgcggtttggattggttcggtttgtgcggtttatcgcgagat-aaaaaatattacattaactctaatattgccaacttgttacaaaa 32823756  T
Q  202 taaacataagatattttattttgctgtt 229  Q
    |||||||| || ||||||||||||||||    
T  32823757 taaacataggacattttattttgctgtt 32823784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 13852270 - 13852505
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaa---- 104  Q
    |||||||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||        
T  13852270 gtttggttcggttttgagcataaaagtcatccaaactgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaacca 13852369  T
Q  105 -accaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaata 203  Q
     ||||||||||||||||||||||||||||  |||||| ||||||||||||||| |||||||||||||||||||| ||||||| ||||||| | |||||||    
T  13852370 aaccaaaccaatgcggtttggattggttcggtttgtgaggtttatcacgagataaaaaaatattacattaactccaatattgtcaacttggtacaaaata 13852469  T
Q  204 aacataagatattttattttgctgtttatatgataa 239  Q
    |||||| || ||||||||||||| ||||||||||||    
T  13852470 aacataggacattttattttgctatttatatgataa 13852505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 24361622 - 24361385
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| |||| || | |||| ||||| |||||| ||||||||||| |||| |||||||||| |||| ||||||||| ||||| ||||    
T  24361622 gcggtgcggtttggttcggttttgagaa-aaaagtcatctaaaccgtgagataaaaaaacatgtggtttggtttggttcagttgattttaaaaaaatcat 24361524  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 200  Q
    ||||||||||||||||||||||||||||||||  |||||| ||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| ||||    
T  24361523 ccaaaccaaaccaatgcggtttggattggttcggtttgtgcggtttatcatgagataaaaaaatattacattaactctaatattgtcaacttgttacaaa 24361424  T
Q  201 ataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||||| || ||||||||||| ||||||||||||||    
T  24361423 ataaacataggacattttattttgatgtttatatgataa 24361385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 31876758 - 31876527
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| ||||| |||| |||| ||||||||| ||||||||||||||| |||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  31876758 gcggtgcggtttg-ttcggttttgagcataaaagtcatccaaaccgcgaaataaaaaagcatgcagtttggttcggttcggttgatttttaaaaagtcat 31876660  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 200  Q
          |||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  31876659 -----tcaaaccaatgcggtttggattggttcaatttgtgcggtttatcgcgagat-aaaaaatattacattaactctaatattgccaacttgttacaaa 31876566  T
Q  201 ataaacataagatattttattttgctgtttatatgataa 239  Q
    |||| |||| || ||||||||||| ||||||||||||||    
T  31876565 ataatcataggacattttattttgttgtttatatgataa 31876527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 47903201 - 47903431
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47903201 gcggtgcggtttggttcggttttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 47903300  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagat-gaaaaaatattacattaactctaatattgccaacttgttgcaa 199  Q
    |||||||||||||||| |  |||||||||||         ||||||||||| || |  |||||||||||| ||||||||||||||||||  ||||| |||    
T  47903301 ccaaaccaaaccaatgtgacttggattggtt---------tggtttatcacaagttaaaaaaaatattactttaactctaatattgccaggttgttacaa 47903391  T
Q  200 aataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||||||  | ||||||||||| ||||||||||||||    
T  47903392 aataaacatattacattttattttgttgtttatatgataa 47903431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 11206487 - 11206295
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||    
T  11206487 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaaacatgcggtttggtttggttcggttgatttttaaaaagtcat 11206388  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgccaact 191  Q
    ||||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| |||||||||||||||||||||||||||    
T  11206387 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgccaact 11206295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 31983115 - 31982885
Alignment:
Q  11 ttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaa 110  Q
    |||||||| |||| ||||||||| | ||||||||||||||||||||||  |||| ||||||||| |||| ||||||||||||||||||||||||||||||    
T  31983115 ttggttcggttttgagcataaaagttatccaaaccgcgagataaaaaaatatgcagtttggtttggttcagttgatttttaaaaagtcatccaaaccaaa 31983016  T
Q  111 ccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaa--atattacattaactctaatattgccaacttgttgcaaaataaacat 208  Q
    |||| | || ||||||||||||  || ||| |||||||  |||||| |||||  |||||||||||||||||||||||||||||| || ||||||||||||    
T  31983015 ccaacgtgggttggattggttcggttggtgcggtttattgcgagataaaaaaatatattacattaactctaatattgccaacttattacaaaataaacat 31982916  T
Q  209 aagatattttattttgctgtttatatgataa 239  Q
    | || |||||||||||||||| | |||||||    
T  31982915 aggacattttattttgctgttaacatgataa 31982885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 61 - 239
Target Start/End: Complemental strand, 24361357 - 24361179
Alignment:
Q  61 atgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaa 160  Q
    |||||||||||||| |||||||| ||||  ||||| ||||||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||| |||    
T  24361357 atgcggtttggtttggttcggttaatttaaaaaaaatcatccaaaccaaactaatgcggtttggattggttcggtttgtgcggtttatcacgagataaaa 24361258  T
Q  161 aaatattacattaactctaatattgccaacttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||| ||||||||||||||    
T  24361257 aaatattacattaactctaatattgtcaacttgttacaaaataaacataggacattttattttgatgtttatatgataa 24361179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 18673319 - 18673112
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    |||||||  ||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| | |||||||| |||| ||||| ||| ||||||||||    
T  18673319 gcggtgcgatttggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgtgatttggtttagttcagttgaatttcaaaaagtcat 18673220  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 200  Q
    |||||||||| ||||| || ||||||||||||  || ||| |||||||| |||||| |||||||||||||||||||||||||||| ||||||||| ||||    
T  18673219 ccaaaccaaaacaatgtggcttggattggttcggttggtgcggtttatcgcgagat-aaaaaatattacattaactctaatattgacaacttgttccaaa 18673121  T
Q  201 ataaacata 209  Q
    |||||||||    
T  18673120 ataaacata 18673112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 25 - 239
Target Start/End: Original strand, 43429153 - 43429365
Alignment:
Q  25 agcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttgg 124  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||  |           
T  43429153 agcataaaagtcatccaaaccgcgagataaaaatgcacgcggtttggtttggttcggttgatttttaaaaagtcatccaaacaaaaccaaaccaaacc-- 43429250  T
Q  125 attggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacataagatattttattttg 224  Q
    | |||||   |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||    
T  43429251 aatggttgggtttgtgcggtttatcgcgagataaaaaaatattacattaactctaatattgccaacttgttacaaaataaacataggacattttattttg 43429350  T
Q  225 ctgtttatatgataa 239  Q
     ||||||||||||||    
T  43429351 atgtttatatgataa 43429365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 1335276 - 1335514
Alignment:
Q  5 tgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaa 104  Q
    |||||||||||||| |||| ||||||||| |||||||| |  |||||||||||||||   |||||||||| ||||||||||||||||||||||| |||||    
T  1335276 tgcagtttggttcggttttgagcataaaagtcatccaa-ctacgagataaaaaagcacctggtttggtttggttcggttgatttttaaaaagtcctccaa 1335374  T
Q  105 accaaaccaa-----tgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaa 199  Q
    ||||||||||     ||||| ||||||| ||||  || ||| |||||||| | || | ||||||||||||||||||||||||||||||||||| || |||    
T  1335375 accaaaccaaatcaatgcggcttggattagttcggttggtgcggtttatcgcaagttaaaaaaatattacattaactctaatattgccaacttattacaa 1335474  T
Q  200 aataaacataagatattttattttgctgtttatatgataa 239  Q
    |||||||||| || ||||||||||| |||||| |||||||    
T  1335475 aataaacataggacattttattttgttgtttacatgataa 1335514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 12117553 - 12117750
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| ||| |||| ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  12117553 gcggtgcggtttggttcggtttcaagtataataatcatccaaaccgcgagagaaaaaagcatgcagtttggtttggttcggttgatttttaaaaagtcat 12117652  T
Q  101 -----ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgccaact 191  Q
         ||||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| |||||||||||||||||||||||||||    
T  12117653 ccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgccaact 12117750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 47069622 - 47069824
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  47069622 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 47069721  T
Q  101 ----------ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgcca 188  Q
              ||||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| ||||||||||||||||||||||||    
T  47069722 ccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgcca 47069821  T
Q  189 act 191  Q
    |||    
T  47069822 act 47069824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 3213351 - 3213149
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  3213351 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 3213252  T
Q  101 c----------caaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgcca 188  Q
    |          |||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| |||||||||| |||||||||||||    
T  3213251 ccaaatcaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaagtctaatattgcca 3213152  T
Q  189 act 191  Q
    |||    
T  3213151 act 3213149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 10671774 - 10671976
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  10671774 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 10671873  T
Q  101 ----------ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgcca 188  Q
              ||||||||||||||||||||||||||||||||| ||  ||  ||| ||| |||||| |  ||||| ||||||||||||||||||||||||    
T  10671874 ccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcagttaatcgcgagataaataaaaaaattacattaactctaatattgcca 10671973  T
Q  189 act 191  Q
    |||    
T  10671974 act 10671976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 47204586 - 47204384
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  47204586 gcggtgcggtttggttcggtttcaagcataacaatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 47204487  T
Q  101 ccaaaccaaac----------caatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgcca 188  Q
    |||||||||||          |||||||||||| ||||||||| ||  || |||| ||| |||||| |  ||||| ||||||||||||||||||||||||    
T  47204486 ccaaaccaaaccaaaccaaatcaatgcggtttgaattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgcca 47204387  T
Q  189 act 191  Q
    |||    
T  47204386 act 47204384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 39 - 239
Target Start/End: Original strand, 48675103 - 48675309
Alignment:
Q  39 ccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaa-----tgcggtttggattggttca 133  Q
    ||||||||| ||||||||||||| | |||||| ||| ||||||||||||||||| ||||||||||| |||||||||     ||||| |||||| |||||     
T  48675103 ccaaaccgcaagataaaaaagcacgtggtttgatttggttcggttgatttttaagaagtcatccaagccaaaccaaatcaatgcggcttggatcggttcg 48675202  T
Q  134 atttgtgtggtttatcacgagatgaaaa-aatattacattaactctaatattgccaacttgttgcaaaataaacataagatattttattttgctgtttat 232  Q
     |||||| |||||||| |||||| |||| ||||||| |||||||||||||||| ||| ||||| ||||||||| ||| || |||||||||||||||||||    
T  48675203 gtttgtgcggtttatcgcgagataaaaaaaatattatattaactctaatattgtcaatttgttacaaaataaatataggacattttattttgctgtttat 48675302  T
Q  233 atgataa 239  Q
    |||||||    
T  48675303 atgataa 48675309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 92 - 239
Target Start/End: Original strand, 22366500 - 22366647
Alignment:
Q  92 aaaagtcatccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaact 191  Q
    |||||||||||||||||||||||||||| |||||||||||   |||||| |||||||| | |||| |||||| ||||||||||||||||||||||||| |    
T  22366500 aaaagtcatccaaaccaaaccaatgcggcttggattggtttggtttgtgcggtttatcgcaagataaaaaaaaattacattaactctaatattgccaatt 22366599  T
Q  192 tgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    |||| ||||||||||||| || ||||||||||| ||||||||||||||    
T  22366600 tgttacaaaataaacataggacattttattttgatgtttatatgataa 22366647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 7760066 - 7760293
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatc-----ca 103  Q
    ||||||||||||||| |||||||||||||||||||| | |||||||||||| || | |||||||||     ||||||||||||||||||||||     ||    
T  7760066 gtttggttcgattttgagcataaaaatcatccaaactgtgagataaaaaagtatccagtttggttt-----ggttgatttttaaaaagtcatctaaatca 7760160  T
Q  104 aaccaaaccaatgcggtttggattggttcaatttg-----tgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgca 198  Q
    || ||||||||||||| |||||||||||   ||||     || |||||||| ||| || |||||||||| ||||||||||||||||||| ||||||| ||    
T  7760161 aatcaaaccaatgcggcttggattggtttggtttggtttgtgcggtttatcgcgatataaaaaaatatttcattaactctaatattgccgacttgttaca 7760260  T
Q  199 aaataaacataagatattttattttgctgttta 231  Q
    ||||||||||| || ||||||||||||| ||||    
T  7760261 aaataaacatatgacattttattttgctcttta 7760293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 10069147 - 10069402
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| |||| ||||||||| ||||| ||||||||| |||||||| ||||| |||||||||  ||||||||||||||||||||||||    
T  10069147 gcggtgcggtttggttcggttttgagcataaaagtcatctaaaccgcgatataaaaaaacatgctgtttggtttgattcggttgatttttaaaaagtcat 10069246  T
Q  101 ---------------ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaa--atattacattaactctaatat 183  Q
                   |||||||||||||| | |  ||||||||||||| || ||    |||||| |||||| |||||  |||||||||||||||||||||    
T  10069247 tcaaaccaaaccaaaccaaaccaaaccaacgtgacttggattggttcagttggtacaatttatcgcgagataaaaaaatatattacattaactctaatat 10069346  T
Q  184 tgccaacttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    |||||||||||| ||||||||||||  || |||||||||||||||||| |||||||    
T  10069347 tgccaacttgttacaaaataaacatgggacattttattttgctgtttagatgataa 10069402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 8769092 - 8768955
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| ||| |||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  8769092 gcggtgcggtttggttcggtttcaagtataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 8768993  T
Q  101 ccaaaccaaaccaa-----tgcggtttggattggttca 133  Q
    ||||||||||| ||     |||||||||||||||||||    
T  8768992 ccaaaccaaacgaaactaatgcggtttggattggttca 8768955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 7209395 - 7209267
Alignment:
Q  4 gtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatcca 103  Q
    |||| |||||||||| |||| |  |||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  7209395 gtgcggtttggttcggttttgaatataaaagtcatccaaaccacgagataaaaaagcatacggtttggtttggttcggttgatttttaaaaagtcatcca 7209296  T
Q  104 aaccaaaccaatgcggtttggattggttc 132  Q
    |||||||||||||||  ||||||||||||    
T  7209295 aaccaaaccaatgcgtcttggattggttc 7209267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 5932649 - 5932759
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| ||||| |||| |||| ||||||||| |||||  ||||||||||||| ||||||||||||||||||| |||  ||||||||||||||||||||    
T  5932649 gcggtgcggtttgattcggttttgagcataaaagtcatctgaaccgcgagataagaaagcatgcggtttggtttggttaagttgatttttaaaaagtcat 5932748  T
Q  101 ccaaaccaaac 111  Q
    |||||||||||    
T  5932749 ccaaaccaaac 5932759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 5932760 - 5932841
Alignment:
Q  158 aaaaaatattacattaactctaatattgccaacttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||| ||||||||||||||    
T  5932760 aaaaaatattacattaactctaatattgccaacttgttacaaaataaacataggaaattttattttgttgtttatatgataa 5932841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 11216110 - 11216243
Alignment:
Q  3 ggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatcc 102  Q
    ||||||||||||||||||||| |||||||||||||| | ||| | ||||||||||| |||| |||||| |||  || | ||||||||||||||||  |||    
T  11216110 ggtgcagtttggttcgattttgagcataaaaatcattcgaactgtgagataaaaaaacatgtggtttgatttaatttgattgatttttaaaaagttgtcc 11216209  T
Q  103 aaaccaaaccaatgcggtttggattggttcaatt 136  Q
    |||||||| |||||| ||||| ||||||||||||    
T  11216210 aaaccaaatcaatgcagtttgaattggttcaatt 11216243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 162
Target Start/End: Original strand, 36507920 - 36508061
Alignment:
Q  21 tttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggt 120  Q
    ||||||||| ||| |||||||||  | |||||| |||| ||||| ||||| |||  |||||||||||||||||||||||||||||||||||||||||||     
T  36507920 tttaagcattaaagtcatccaaattgtgagatagaaaatcatgcagtttgatttgattcggttgatttttaaaaagtcatccaaaccaaaccaatgcggc 36508019  T
Q  121 ttggattggttcaatttgtgtggtttatcacgagatgaaaaa 162  Q
    ||||||||||||  || |||| |||||||  ||||| |||||    
T  36508020 ttggattggttcggttggtgtcgtttatcgtgagataaaaaa 36508061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 2409092 - 2408928
Alignment:
Q  4 gtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat--- 100  Q
    |||| ||||||||  ||||| ||||||||| |||||||||||| ||||||||||| |||||||||||||||  |||  |||||||||||||||| ||       
T  2409092 gtgcggtttggtttaattttgagcataaaagtcatccaaaccgtgagataaaaaaccatgcggtttggtttgattcaattgatttttaaaaagttattca 2408993  T
Q  101 --ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaa 163  Q
      | |||||||| ||||||||||||||||||||   |||||| |||||||||  |||| ||||||    
T  2408992 aactaaaccaaatcaatgcggtttggattggtttggtttgtgcggtttatcataagataaaaaaa 2408928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 7205999 - 7205916
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaa 92  Q
    |||||||||| |||| | |||| || |||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||    
T  7205999 gtttggttcggttttgaacatagaagtcatccaaaccgcgagataaaaaaacatgcggtttgtttttattctgttgatttttaa 7205916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 32942208 - 32942115
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||||||||||||||||| |||| ||  ||||| |||||| ||| || |||||||||| |||||||||||||||  ||||||||| ||||||||    
T  32942208 gcggtgcagtttggttcggttttgaggttaaaagtcatccgaactgcaagataaaaaaacatgcggtttggtttgattcggttgacttttaaaa 32942115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 8568683 - 8568590
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||| |||||||||| |||| ||  ||||| |||||| |||||| ||||||| ||| |||||||||||||  |||||||||| ||||||||    
T  8568683 gcggtgcggtttggttcggttttgaggttaaaagtcatccgaaccgcaagataaataagtatgcggtttggttcggttcggttgacttttaaaa 8568590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 23729369 - 23729434
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||   |||||||| ||||||||    
T  23729369 taaaaatcatccgaaccgcaagataaaaaagcatgcggtttggtttaactcggttgacttttaaaa 23729434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 45898189 - 45898128
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcat 62  Q
    ||||||| |||||||||| ||||  |||||||| ||||||||||||||||||||||||||||    
T  45898189 gcggtgcggtttggttcggttttgtgcataaaagtcatccaaaccgcgagataaaaaagcat 45898128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 129
Target Start/End: Complemental strand, 524994 - 524867
Alignment:
Q  2 cggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatc 101  Q
    ||||||||||||||||  |||||||  ||||| | |||  |||||| ||||||||||  ||||||||||||||  |||| |||| ||||||||    |||    
T  524994 cggtgcagtttggttcatttttaaggctaaaagttatctgaaccgcaagataaaaaaatatgcggtttggtttgattcgattgacttttaaaataaaatc 524895  T
Q  102 caaaccaaaccaatgcggtttggattgg 129  Q
    |||||||||||||| || ||||| ||||    
T  524894 caaaccaaaccaattcgatttgggttgg 524867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 16535872 - 16535758
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    |||||||||||| |||||||||| ||  ||||| |||| |||||||| || ||||||| ||||||||||  ||  |||||||||| ||||||||    ||    
T  16535872 gcggtgcagtttagttcgattttgaggctaaaagtcatgcaaaccgcaagttaaaaaaacatgcggtttcattaggttcggttgacttttaaaataaaat 16535773  T
Q  101 ccaaaccaaaccaat 115  Q
    || ||||||||||||    
T  16535772 ccgaaccaaaccaat 16535758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 16629790 - 16629904
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    |||||||||||| |||||||||| ||  ||||| |||| |||||||| || ||||||| ||||||||||  ||  |||||||||| ||||||||    ||    
T  16629790 gcggtgcagtttagttcgattttgaggctaaaagtcatgcaaaccgcaagttaaaaaaacatgcggtttcattaggttcggttgacttttaaaataaaat 16629889  T
Q  101 ccaaaccaaaccaat 115  Q
    || ||||||||||||    
T  16629890 ccgaaccaaaccaat 16629904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 8118373 - 8118316
Alignment:
Q  37 atccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||| |||||| ||||||||||||||| |||||||||| |||||||||||||| ||||    
T  8118373 atccgaaccgcaagataaaaaagcatgtggtttggtttggttcggttgattttaaaaa 8118316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 26215251 - 26215160
Alignment:
Q  3 ggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||| |||||||| | |||| ||  ||||| ||||||||||||| |||||| ||||||| ||| || |||| |||||||||| ||||||||    
T  26215251 ggtgcggtttggtttggttttgaggttaaaagtcatccaaaccgcaagataataaagcatacgggtttgtttggttcggttgacttttaaaa 26215160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 36508447 - 36508528
Alignment:
Q  158 aaaaaatattacattaactctaatattgccaacttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    |||||||||||  |||| |||||||||||| | ||| | ||||||||||| | || ||||||||||| |||||| |||||||    
T  36508447 aaaaaatattatgttaattctaatattgccgatttgctacaaaataaacacatgacattttattttgttgtttacatgataa 36508528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 27456362 - 27456406
Alignment:
Q  50 gataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||||    
T  27456362 gataaaaaagcatgcggtttggtttagttctgttgacttttaaaa 27456406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 31287906 - 31287815
Alignment:
Q  3 ggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||| |||||| |||||| ||  ||| | |||||  |||||  ||||||| ||| |||||||||||||| |||||||||| ||||||||    
T  31287906 ggtgcagcttggtttgattttgaggctaatagtcatctgaaccgtaagataaataagtatgcggtttggtttggttcggttgacttttaaaa 31287815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 48642761 - 48642826
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||| |||||  |||||| |||| ||||| ||||||||||||||| |||||||||| ||| ||||    
T  48642761 taaaattcatctgaaccgcaagattaaaaaacatgcggtttggtttggttcggttgactttaaaaa 48642826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 129
Target Start/End: Original strand, 20334565 - 20334665
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattg 128  Q
    ||||| || ||| |||||| ||||||| ||  |||||||||||||| |||||||||| ||| ||||    |||  |||||||||| ||| ||||||||||    
T  20334565 taaaagtcgtccgaaccgcaagataaataaatatgcggtttggtttggttcggttgactttaaaaataaaatctgaaccaaaccattgctgtttggattg 20334664  T
Q  129 g 129  Q
    |    
T  20334665 g 20334665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 46147198 - 46147262
Alignment:
Q  30 aaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||| ||||| ||||||  || ||||||||||||||| ||||||| ||| |||||| ||||||||    
T  46147198 aaaagtcatctaaaccgtaaggtaaaaaagcatgcggattggtttggtttggttgacttttaaaa 46147262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 42544620 - 42544850
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaacca 108  Q
    ||||| |||| |||| |||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  42544620 gtttgcttcggttttgagcaaaaaagtcatctaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaagaagtcatccaaacca 42544719  T
Q  109 aaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacat 208  Q
    ||||||||||||||||||||||||  |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42544720 aaccaatgcggtttggattggttcggtttgtgcggtttatcgcgagataaaaaaatattacattaactctaatattgccaacttgttacaaaataaacat 42544819  T
Q  209 aagatattttattttgctgtttatatgataa 239  Q
    |  | ||||||||||| ||||||||||||||    
T  42544820 agaacattttattttgatgtttatatgataa 42544850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 12166269 - 12166054
Alignment:
Q  25 agcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttgg 124  Q
    ||||||||| ||||| ||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12166269 agcataaaagtcatcaaaatcgcgagataaaaaagcatgcagtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggcttgg 12166170  T
Q  125 attggttcaatttgtgtggtttatcacgagat-gaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacataagatattttatttt 223  Q
    |||||||   ||||||||||||||||||||||  ||||||||||||||||||||||| |||| ||||||||| ||||||||||||| || ||||||||||    
T  12166169 attggtttggtttgtgtggtttatcacgagataaaaaaaatattacattaactctaacattgtcaacttgttacaaaataaacatatgacattttatttt 12166070  T
Q  224 gctgtttatatgataa 239  Q
    ||||||||||||||||    
T  12166069 gctgtttatatgataa 12166054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 333406 - 333169
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||  ||||||| ||||| |||||||||||||||||||    
T  333406 gcggtgcggtttggttcgattttgagcataaaagtcatccaaaccgcgagatagaaaagcatgcgaattggtttggttcgattgatttttaaaaagtcat 333307  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 200  Q
    ||||||||||||||||| | ||| |||||||   |||||| |||||||| |||||| |||||||||||||||||||||||||||| ||||||||| ||||    
T  333306 ccaaaccaaaccaatgcagcttgaattggtttggtttgtgcggtttatcgcgagat-aaaaaatattacattaactctaatattgtcaacttgttacaaa 333208  T
Q  201 ataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||||| || ||||||||||| ||||||||||||||    
T  333207 ataaacatatgacattttattttgttgtttatatgataa 333169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 2227005 - 2226769
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaacca 108  Q
    |||||||||| |||| |||||||||| |||||||||||||||||||||||| | | |||||||||| |||||||||||||||||||| ||||||||||||    
T  2227005 gtttggttcggttttgagcataaaaaacatccaaaccgcgagataaaaaagaacgtggtttggtttggttcggttgatttttaaaaactcatccaaacca 2226906  T
Q  109 aacc-----aatgcggtttggattggttcaatttgtgtggtttatcacgagat-gaaaaaatattacattaactctaatattgccaacttgttgcaaaat 202  Q
    ||||     ||||||||||||||||||||  |||||| |||||||| ||||||  |||||||||||||||||||||||||||||||||||||| ||||||    
T  2226905 aaccaatctaatgcggtttggattggttcggtttgtgcggtttatcgcgagataaaaaaaatattacattaactctaatattgccaacttgttacaaaat 2226806  T
Q  203 aaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||| || ||||||||||| ||||||||||||||    
T  2226805 aaacataggacattttattttgatgtttatatgataa 2226769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 12681193 - 12680961
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||| ||||| |||| ||||||||| |||| || ||||||||||||||||||||| |||||||||     ||||||||||||||||| ||||    
T  12681193 gcggtgcggtttagttcggttttgagcataaaagtcattcagaccgcgagataaaaaagcatgtggtttggtt-----cggttgatttttaaaaattcat 12681099  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 200  Q
    |||||||||||||||||||||||||||||||   ||||||  |||||||  ||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  12681098 ccaaaccaaaccaatgcggtttggattggttaggtttgtgcagtttatcgtgagat-aaaaaatattacattaactctaatattgccaacttgttacaaa 12681000  T
Q  201 ataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  12680999 ataaacataggatattttattttgttgtttatatgataa 12680961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30265920 - 30265680
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||| | |||| ||||||||||||||| ||||||| |||||||||| ||||| ||||||||| |||||||||||||||||||||||||    
T  30265920 gcggtgcggtttggtttggttttgagcataaaaatcatctaaaccgcaagataaaaaaacatgcagtttggtttggttcggttgatttttaaaaagtcat 30265821  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagat--gaaaaaatattacattaactctaatattgccaacttgttgca 198  Q
    | ||||||||||||||||| ||| ||| ||||  |||||| |||| ||| ||||||   |||||| |||||||||||||||||||||||||||| || ||    
T  30265820 caaaaccaaaccaatgcggcttgaattagttcggtttgtgcggttcatcgcgagataaaaaaaaaaattacattaactctaatattgccaacttattaca 30265721  T
Q  199 aaataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  30265720 aaataaacataggacattttattttgctgtttatatgataa 30265680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 36177210 - 36176986
Alignment:
Q  25 agcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaac----------caaaccaa 114  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||          ||||||||    
T  36177210 agcataaaagtcatccaaaccgcgagataaaaatgcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaacaaaaccaaaccaaaccaa 36177111  T
Q  115 tgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacataagata 214  Q
    ||||| |||||||||||   |||||| |||||||| | |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |    
T  36177110 tgcggcttggattggttgggtttgtgcggtttatcgcaagataaaaaaatattacattaactctaatattgccaacttgttacaaaataaacataggaca 36177011  T
Q  215 ttttattttgctgtttatatgataa 239  Q
    |||||||||||||||||||||||||    
T  36177010 ttttattttgctgtttatatgataa 36176986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 36103741 - 36103494
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagc-atgcggtttggttttgttcggttgatttttaaaaagtca 99  Q
    ||||||| |||||||||| |||| |||||||||  ||||||||  | |||||||||||   |||||||||||||| |||| |||||||||||||||||||    
T  36103741 gcggtgcggtttggttcggttttgagcataaaatacatccaaagtgtgagataaaaaaaatatgcggtttggtttggttcagttgatttttaaaaagtca 36103642  T
Q  100 tccaaaccaaaccaa-----tgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgt 194  Q
    |||||||||||||||     ||| ||||||||| ||||  |||||| |||||| | ||||||| ||||||||||||||||||||||||||||||||||||    
T  36103641 tccaaaccaaaccaaatcaatgcagtttggattcgttcggtttgtgcggtttaccgcgagatgtaaaaatattacattaactctaatattgccaacttgt 36103542  T
Q  195 tgcaaaataaacataagatattttattttgctgtttatatgataatat 242  Q
    | |||||||||||||  |||||||||||||||||||||||||||||||    
T  36103541 tacaaaataaacatataatattttattttgctgtttatatgataatat 36103494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 27886545 - 27886354
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  27886545 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 27886446  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgccaac 190  Q
    ||||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| ||||||||||||||||||||||||||    
T  27886445 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgccaac 27886354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 209
Target Start/End: Original strand, 38433652 - 38433865
Alignment:
Q  2 cggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtc--- 98  Q
    ||||||||||| ||||| |||| ||||||||| |||| ||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||       
T  38433652 cggtgcagtttagttcggttttgagcataaaagtcattcaaaccgcgagataaaaaatcatgcggtttagtttggttcggttgatttttaaaaagtcctc 38433751  T
Q  99 --atccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagat-gaaaaaatattacattaactctaatattgccaacttgtt 195  Q
      | ||||||||||||||||||| ||||||||||||  |||||| |||||||| ||||||  ||||||||||||||||||||||||||||||||||||||    
T  38433752 caaaccaaaccaaaccaatgcggcttggattggttcggtttgtgcggtttatcgcgagataaaaaaaatattacattaactctaatattgccaacttgtt 38433851  T
Q  196 gcaaaataaacata 209  Q
     |||||||||||||    
T  38433852 acaaaataaacata 38433865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 9160934 - 9161179
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgtt-----cggttgatttttaaaaa 95  Q
    ||||||| |||||||||| |||| || | |||| |||| |||||||||||||||||| |||||||||||||||| |||     |||||||||||||||||    
T  9160934 gcggtgcggtttggttcggttttgagaa-aaaagtcattcaaaccgcgagataaaaa-gcatgcggtttggtttggtttggttcggttgatttttaaaaa 9161031  T
Q  96 gtcatccaaaccaaaccaa-----tgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaac 190  Q
    |||||||||||||||||||     ||||||||||||||||||  |||||| |||||||| | |||| |||||||||||||||||||||||||||||||||    
T  9161032 gtcatccaaaccaaaccaaaccaatgcggtttggattggttcggtttgtgcggtttatcgcaagat-aaaaaatattacattaactctaatattgccaac 9161130  T
Q  191 ttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||  ||||||||||||| || ||||||||||| ||||||||||||||    
T  9161131 ttgtcacaaaataaacataggacattttattttgatgtttatatgataa 9161179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 30001965 - 30002156
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||| ||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||    
T  30001965 gcggtgcggtttggttcggtttcaagcataataataatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgttttttaaaaagtcat 30002064  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgccaact 191  Q
    ||||||||||||||||||||||||||||||||| ||  || |||| |||||||||| |  ||||| |||||||||||| ||||||||||||||    
T  30002065 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcacgagataaataaaaaaattacattaact-taatattgccaact 30002156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 58 - 239
Target Start/End: Original strand, 10174096 - 10174269
Alignment:
Q  58 agcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatg 157  Q
    ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||         |||||||| ||||||     
T  10174096 agcatgcggtttggtttcgtttggttgatttttaaaaagttatccaaaccaaaccaatgcggtttggattggttc---------ggtttatcgcgagata 10174186  T
Q  158 aaaa-aatattacattaactctaatattgccaacttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||    
T  10174187 aaaaaaatattacattaactctaatattgccaacttgttacaaaataaacatatgacattttattttgctgtttatatgataa 10174269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 17085366 - 17085136
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||  |||| ||||||||| ||||||||||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||||||    
T  17085366 gcggtgcggtttggttcagttttgagcataaaagtcatccaaaccacgagataaaaaagcatgcgatttagtttggttcggttgatttttaaaaagtcat 17085267  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 200  Q
    || || |||||||||| || ||||||| ||||  || ||| | ||||||  ||||| |||||||||||  ||||||||||||||||| |||| || ||||    
T  17085266 cccaatcaaaccaatgtggcttggattcgttcggttggtgcgatttatcgtgagataaaaaaatattatgttaactctaatattgccgacttcttacaaa 17085167  T
Q  201 ataaacataagatattttattttgctgttta 231  Q
    ||||||| |||| ||||||||||| ||||||    
T  17085166 ataaacacaagacattttattttgttgttta 17085136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 667743 - 667551
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| | |||| ||| ||||||||||| |||||||||||||||||||||||||    
T  667743 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaaacatacggtttggtttggttcggttgatttttaaaaagtcat 667644  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgccaact 191  Q
    ||||||||||||||||||||||||||||||||| ||  ||  ||  ||| |||||| |  ||||| |||||||||||||||||||||||||||    
T  667643 ccaaaccaaaccaatgcggtttggattggttcagttgatgcagtaaatcgcgagataaataaaaaaattacattaactctaatattgccaact 667551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 15068414 - 15068616
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||    
T  15068414 gcggtgcggtttggttcggttttaagcataataatcatccaaaccgcgagagaaaaaagcatgcgatttggtttggttcggttgatttttaaaaagtcat 15068513  T
Q  101 ----------ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgcca 188  Q
              ||||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| ||||||||||||||||||||||||    
T  15068514 ccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgcca 15068613  T
Q  189 act 191  Q
    |||    
T  15068614 act 15068616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 11917359 - 11917561
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  11917359 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 11917458  T
Q  101 ----------ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgcca 188  Q
              ||||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| |||||||| |||||||||||||||    
T  11917459 ccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacatttactctaatattgcca 11917558  T
Q  189 act 191  Q
    |||    
T  11917559 act 11917561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 76 - 239
Target Start/End: Complemental strand, 32521276 - 32521106
Alignment:
Q  76 gttcggttgatttttaaaaagtcatccaaaccaaaccaa-----tgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaa--tatta 168  Q
    |||||||||||||||||||| ||||||||||||||||||     ||| ||||||||||||||  |||||| ||||||||  ||||| ||||||  |||||    
T  32521276 gttcggttgatttttaaaaattcatccaaaccaaaccaaatcaatgcagtttggattggttcggtttgtgcggtttatcgtgagataaaaaaaaatatta 32521177  T
Q  169 cattaactctaatattgccaacttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||||||||||||||||||||||| ||||||||||||| || ||||||||||| ||||||||||||||    
T  32521176 cattaactctaatattgccaacttgttacaaaataaacataggacattttattttgttgtttatatgataa 32521106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 58 - 239
Target Start/End: Original strand, 35358947 - 35359133
Alignment:
Q  58 agcatgcggtttggttttgttcggttgatttttaaaaagtcatccaa-----accaaaccaatgcggtttggattggttcaatttgtgtggtttatcacg 152  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||     ||||||||||| ||| ||||||| ||||  ||  || |||||||| ||    
T  35358947 agcatgcggtttggtttggttcggttgatatttaaaaagtcatccaaaccaaaccaaaccaatacggcttggattagttcggttgatgcggtttatcgcg 35359046  T
Q  153 agatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    |||| ||||| |||||||||||||||||||||||||||||||| ||| ||||||||| || ||||||||||| |||||| |||||||    
T  35359047 agataaaaaagtattacattaactctaatattgccaacttgttacaacataaacataggacattttattttgttgtttacatgataa 35359133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 8408944 - 8409144
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtc-- 98  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||      
T  8408944 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagtatgcggtttggtttggttcggttgatttttaaaaagtcac 8409043  T
Q  99 --------atccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgcca 188  Q
            | ||||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| |||||||||||| |||||||||||    
T  8409044 ccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaact-taatattgcca 8409142  T
Q  189 ac 190  Q
    ||    
T  8409143 ac 8409144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 701173 - 701375
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttga-tttttaaaaagtca 99  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| |||||| |||| |||||||||| |||||||||| ||||||||||||||    
T  701173 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaaacatgtggtttggtttggttcggttgattttttaaaaagtca 701272  T
Q  100 tccaaaccaaac----------caatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgcc 187  Q
    ||||||||||||          |||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| |||||||||||| ||||||||||    
T  701273 tccaaaccaaaccaaaccaaatcaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaact-taatattgcc 701371  T
Q  188 aact 191  Q
    ||||    
T  701372 aact 701375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 209
Target Start/End: Complemental strand, 9988958 - 9988772
Alignment:
Q  27 cataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaa----------tg 116  Q
    ||||||| ||||||||||| |||||||||||| |||| |||||| ||     ||||||||||||||||||||||||||| ||||||||          ||    
T  9988958 cataaaagtcatccaaaccacgagataaaaaaacatgtggtttgatt-----cggttgatttttaaaaagtcatccaaatcaaaccaaacaaaaccaatg 9988864  T
Q  117 cggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacata 209  Q
    ||| || |||||||||  |  ||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9988863 cggcttagattggttcggtg-gtgcggtttatcgcgagataaaaaaatattacattaactctaatattgccaacttgttacaaaataaacata 9988772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 23780778 - 23780839
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcat 62  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  23780778 gcggtgcggtttggttcggttttaagcataaaagtcatccaaaccgcgagataaaaaagcat 23780839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 23867731 - 23867792
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcat 62  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  23867731 gcggtgcggtttggttcggttttaagcataaaagtcatccaaaccgcgagataaaaaagcat 23867792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 27572174 - 27572081
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||| |||||||||| |||| ||  ||||| |||||| |||||| || ||||||||||||||||||||||| |||||||||  ||||||||    
T  27572174 gcggtgcggtttggttcggttttgaggttaaaagtcatccgaaccgcaaggtaaaaaagcatgcggtttggtttggttcggttgtcttttaaaa 27572081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 23780863 - 23780930
Alignment:
Q  172 taactctaatattgccaacttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    |||||| ||||||||||||||||| | ||||||||||| || ||||||||||| ||||||||||||||    
T  23780863 taactcaaatattgccaacttgttaccaaataaacataggacattttattttgatgtttatatgataa 23780930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 23867816 - 23867883
Alignment:
Q  172 taactctaatattgccaacttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    |||||| ||||||||||||||||| | ||||||||||| || ||||||||||| ||||||||||||||    
T  23867816 taactcaaatattgccaacttgttaccaaataaacataggacattttattttgatgtttatatgataa 23867883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 40884295 - 40884414
Alignment:
Q  12 tggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaac 111  Q
    |||||||||||| ||  ||||| |||| | |||||| ||||||||||| |||| ||||||||| ||||||| || ||||||||    ||  |||||||||    
T  40884295 tggttcgattttgaggttaaaagtcattcgaaccgcaagataaaaaagtatgctgtttggtttagttcggtcgacttttaaaataaaatttaaaccaaac 40884394  T
Q  112 caatgcggtttggattggtt 131  Q
    |||||| |||||||||||||    
T  40884395 caatgcagtttggattggtt 40884414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 12379143 - 12379070
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaa-aagcatgcggtttggtt 73  Q
    ||||||||||||||||||||||| ||  |||||||||| | |||||| |||||||| ||| |||||||||||||    
T  12379143 gcggtgcagtttggttcgattttgagactaaaaatcattcgaaccgcaagataaaataagtatgcggtttggtt 12379070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 25495046 - 25495131
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||||||||| |||| ||  ||||| ||||| ||||||| | ||||| ||| |||| |||||||||| ||||||||||||||||||    
T  25495046 gtttggttcggttttgaggctaaaagtcatctaaaccgcaacataaataagtatgcagtttggtttttttcggttgatttttaaaa 25495131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 34881425 - 34881360
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||| ||||||||||| |||||||||||||||  ||||||||||| |||| ||||| ||||||||    
T  34881425 taaaagtcatccaaaccacgagataaaaaagcaaacggtttggtttagttcagttgacttttaaaa 34881360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 2588933 - 2589021
Alignment:
Q  6 gcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||||||||||||||||| ||  ||||| ||||   |||||  |||||||||| ||||||||||||||| ||| |||||| ||||||||    
T  2588933 gcagtttggttcgattttgagactaaaagtcatttgaaccgtaagataaaaaaacatgcggtttggtttggtttggttgacttttaaaa 2589021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 36567735 - 36567803
Alignment:
Q  61 atgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 129  Q
    |||||||||||||  ||| |||||| ||||||||    || ||||||||||||||||||||||||||||    
T  36567735 atgcggtttggttcggtttggttgacttttaaaataaaattcaaaccaaaccaatgcggtttggattgg 36567803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 35240950 - 35240860
Alignment:
Q  4 gtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||| ||||||||||||||| ||  ||||| |||||| |||||  || | |||||| |||||||||| ||| |||||||||| ||| ||||    
T  35240950 gtgcggtttggttcgattttgaggctaaaattcatccgaaccgtaagctgaaaaagtatgcggtttgatttggttcggttgactttaaaaa 35240860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 1048833 - 1048729
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaacca 108  Q
    ||||||||||  ||| || |||||||||||||||||    |||||||||| ||||||||||||||| || || |||| |||| |||    ||||||||||    
T  1048833 gtttggttcggctttgagaataaaaatcatccaaacata-agataaaaaaacatgcggtttggtttggtccgattgacttttgaaataaaatccaaacca 1048735  T
Q  109 aaccaa 114  Q
    ||||||    
T  1048734 aaccaa 1048729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 40692501 - 40692541
Alignment:
Q  54 aaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||||||||||| |||||||| |||||||||| ||||||||    
T  40692501 aaaaagcatgcgatttggtttggttcggttgacttttaaaa 40692541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 129
Target Start/End: Original strand, 41454927 - 41454955
Alignment:
Q  101 ccaaaccaaaccaatgcggtttggattgg 129  Q
    |||||||||||||||||||||||||||||    
T  41454927 ccaaaccaaaccaatgcggtttggattgg 41454955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 51252544 - 51252306
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||    
T  51252544 gcggtgcggtttggttcgattttgagcataaaagtcatccaaaccgcgagataaaaaagcatgtggtttggtttggttgggttgatttttaaaaagtcat 51252445  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 200  Q
    |||||||||| |||||||| ||| ||||||||  |||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  51252444 ccaaaccaaatcaatgcggcttgaattggttcggtttgtgcggtttatcacgagataaaaagatattacattaactctaatattgccaacttgttacaaa 51252345  T
Q  201 ataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||||| || ||||||||||| |||||  |||||||    
T  51252344 ataaacataggacattttattttgttgttttcatgataa 51252306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 33474410 - 33474638
Alignment:
Q  10 tttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaa 109  Q
    |||||||||||||| |||| ||||||||||||||| | |||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||    
T  33474410 tttggttcgattttgagcaaaaaaatcatccaaactgtgagataaaaaagcatgcggtttagtttggttcggttgattttaaaaaagtcatccaaaccaa 33474509  T
Q  110 accaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacata 209  Q
    |||||||||||||||||||||||  |||||| |||||||| |||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  33474510 accaatgcggtttggattggttcggtttgtgcggtttatcgcgagat-aaaaaaaattacattaactctaatattgccaacttgttacaaaataaacata 33474608  T
Q  210 agatattttattttgctgtttatatgataa 239  Q
      | ||||||||||| ||||||||||||||    
T  33474609 gaacattttattttgatgtttatatgataa 33474638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 1161863 - 1161634
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaacca 108  Q
    |||||||||| |||| |||| |||| |||||| |||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||    
T  1161863 gtttggttcggttttgagcagaaaagtcatccgaaccgcgagataaaaaagcatgtggtttggtttggtttggttgatttttaaaaagtcatccaaacca 1161764  T
Q  109 aaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacat 208  Q
    ||||||||| | || |||||||||  |||||| ||||||||  ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  1161763 aaccaatgcagcttcgattggttcggtttgtgcggtttatcgtgagat-aaaaaatattacattaactctaatattgccaacttattacaaaataaacat 1161665  T
Q  209 aagatattttattttgctgtttatatgataa 239  Q
    | || ||||||||||||||||||||||||||    
T  1161664 atgacattttattttgctgtttatatgataa 1161634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 44918503 - 44918738
Alignment:
Q  3 ggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatcc 102  Q
    ||||| ||||||||||||||| ||||||||| ||| |||||| || |||||||||||||||||||||||||     ||||||||||||||||||||||||    
T  44918503 ggtgcggtttggttcgattttgagcataaaagtcacccaaactgcaagataaaaaagcatgcggtttggtt-----cggttgatttttaaaaagtcatcc 44918597  T
Q  103 aaac-----caaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgc 197  Q
    ||||     ||||||||| ||||||||||||||||  |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  44918598 aaacgaaaccaaaccaatacggtttggattggttcggtttgtgcggtttatcacgagat-aaaaaatattacattaactctaatattgccaacttgttac 44918696  T
Q  198 aaaataaacataagatattttattttgctgtttatatgataa 239  Q
    |||||||||||| || ||||||||||| |||| |||||||||    
T  44918697 aaaataaacataggacattttattttgttgttcatatgataa 44918738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 29388986 - 29389229
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| ||||||||||||||| |||| |||| |||||||||||| ||||||||||||||||||||||| ||| ||| | |||||||||||||||||||    
T  29388986 gcggtgcggtttggttcgattttgagcaaaaaagtcatccaaaccgtgagataaaaaagcatgcggtttgatttggtttgattgatttttaaaaagtcat 29389085  T
Q  101 ccaaaccaaac-----caatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgtt 195  Q
    |||||||||||     |||||||||||||||||||||  ||| ||  ||||||| | |||| ||||||||||||||||  |||||||||||||| |||||    
T  29389086 ccaaaccaaaccaaatcaatgcggtttggattggttcggtttatgcagtttatcgcaagataaaaaaatattacattagttctaatattgccaaattgtt 29389185  T
Q  196 gcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
     ||||||||||||| || ||||||||||| ||||||||||||||    
T  29389186 acaaaataaacataggacattttattttgatgtttatatgataa 29389229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 45691750 - 45691993
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaag-catgcggtttggttttgttcggttgatttttaaaaagtca 99  Q
    ||||||| ||||| |||  |||| |||| |||  ||||||||||||||| ||||||||  ||||||||||||||| ||||||||||||||||||||||||    
T  45691750 gcggtgcggtttgattcagttttgagcaaaaatgtcatccaaaccgcgaaataaaaaaaacatgcggtttggtttggttcggttgatttttaaaaagtca 45691849  T
Q  100 tccaaaccaaaccaa-----tgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgt 194  Q
    ||||||| |||||||     ||||||||||||||||||  |||||| ||||||||  ||||| |||||||||||||||||||||||||||| ||||||||    
T  45691850 tccaaactaaaccaaactaatgcggtttggattggttcggtttgtgcggtttatcgtgagat-aaaaaatattacattaactctaatattggcaacttgt 45691948  T
Q  195 tgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    | ||||||||||||| || ||||||||||| ||||||||||||||    
T  45691949 tacaaaataaacataggacattttattttgatgtttatatgataa 45691993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 16529629 - 16529380
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| |||| ||||||||| |||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  16529629 gcggtgcggtttggttcggttttgagcataaaagtcatccaaactgcgagataaaaaagcatgccgtttggtttggttcggttgatttttaaaaagtcat 16529530  T
Q  101 ccaaaccaaa----------ccaatgcggtttggattggttcaatttgtgtggtttatcacgagat-gaaaaaatattacattaactctaatattgccaa 189  Q
     |||||||||          ||||||||| ||| ||||||||  |||||| |||||||| | ||||  ||||||||| |||||||||||||||||| |||    
T  16529529 tcaaaccaaaccaaaccaaaccaatgcggcttgaattggttcggtttgtgcggtttatcgcaagataaaaaaaatatgacattaactctaatattgtcaa 16529430  T
Q  190 cttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    |||||| ||||||||||||| || |||||| |||| ||||||||||||||    
T  16529429 cttgttacaaaataaacataggacattttactttgttgtttatatgataa 16529380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 42789732 - 42789516
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||     | ||||||||||||||||||||    
T  42789732 gcggtgcggtttggtacgattttaagcataaaagtcattcaaaccgcgagataaaaaagcatgcagtttggtt-----cagttgatttttaaaaagtcat 42789638  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 200  Q
    |||||||||| |||||||| |||||| |||||  ||  ||| ||||||| |||||| |||||| ||||||| ||||||||||||||| ||||||| ||||    
T  42789637 ccaaaccaaatcaatgcggcttggatcggttcggttgatgttgtttatcgcgagataaaaaaa-attacatcaactctaatattgccgacttgttacaaa 42789539  T
Q  201 ataaacataagatattttatttt 223  Q
    ||||||||| |||||||||||||    
T  42789538 ataaacatacgatattttatttt 42789516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 39256763 - 39256527
Alignment:
Q  3 ggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatcc 102  Q
    ||||| |||||||||  |||| |||| |||| |||| | ||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  39256763 ggtgcggtttggttctgttttgagcacaaaagtcattcgaactgcgagataaaaaagcatgcggtttagtttggttcggttgatttttaaaaagtcatcc 39256664  T
Q  103 aaaccaaaccaa-----tgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgc 197  Q
    ||||||||||||     | ||| ||||||||||||  |||||| ||||||||  | ||| |||||||||||||||||||||||||||||||||||||| |    
T  39256663 aaaccaaaccaaaccaatacggcttggattggttcggtttgtgcggtttatcgtgtgataaaaaaatattacattaactctaatattgccaacttgttac 39256564  T
Q  198 aaaataaacataagatattttattttgctgtttatat 234  Q
     |||||||| || || ||||||||||| |||||||||    
T  39256563 caaataaacttaggacattttattttgttgtttatat 39256527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 32953994 - 32954244
Alignment:
Q  3 ggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatcc 102  Q
    ||||| |||||||||| |||| | ||||||| |||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32953994 ggtgcggtttggttcggttttgaacataaaagtcatccaaacct-gagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatcc 32954092  T
Q  103 aaaccaaaccaa---------------tgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaa-aatattacattaactctaatattgc 186  Q
    ||||||||||||               ||||| ||||||||||||  |||||| ||||||||  ||||| |||| |||||||||||||||||||||||||    
T  32954093 aaaccaaaccaaaccaaaccaaaccaatgcggcttggattggttcggtttgtgcggtttatcgtgagataaaaaaaatattacattaactctaatattgc 32954192  T
Q  187 caacttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||||| | ||||||||||| || ||||||||||| ||||||||||||||    
T  32954193 caacttgttac-aaataaacataggacattttattttgttgtttatatgataa 32954244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 33910908 - 33910662
Alignment:
Q  4 gtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatcca 103  Q
    |||| |||||||||   ||| ||||||||| |||||||||  |||||||||||||||||| |||||| ||| |||||||||||||||||||| |||||||    
T  33910908 gtgcggtttggttcaggtttgagcataaaagtcatccaaaatgcgagataaaaaagcatgtggtttgatttggttcggttgatttttaaaaattcatcca 33910809  T
Q  104 aacc-----------aaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaactt 192  Q
    || |           ||||||||||||||| |||||||||  ||| || ||||||||| ||||| |||||||||||||||||| ||| ||||||||||||    
T  33910808 aaaccaaaccaaatcaaaccaatgcggttttgattggttcggtttatgcggtttatcatgagataaaaaaatattacattaaccctattattgccaactt 33910709  T
Q  193 gttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    ||| ||||||||||||| || |||||||||||||||||| |||||||    
T  33910708 gttacaaaataaacataggacattttattttgctgtttaaatgataa 33910662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 8211232 - 8211434
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||| | ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  8211232 gcggtgcggtttggtttggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 8211331  T
Q  101 ----------ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgcca 188  Q
              ||||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| ||||||||||||||||||||||||    
T  8211332 ccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgcca 8211431  T
Q  189 act 191  Q
    |||    
T  8211432 act 8211434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 20493702 - 20493905
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||    
T  20493702 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaaacatgcggtttggtttggttcggttgatttttaaaaagtcat 20493801  T
Q  101 ----------ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatatt-acattaactctaatattgcc 187  Q
              ||||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| ||| ||||||||||||||||||||    
T  20493802 ccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatctcgagataaataaaaaaattaacattaactctaatattgcc 20493901  T
Q  188 aact 191  Q
    ||||    
T  20493902 aact 20493905  T

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Target: chr1; HSP #14
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 24911076 - 24910939
Alignment:
Q  103 aaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaa-tattacattaactctaatattgccaacttgttgcaaaa 201  Q
    ||||||||||||||| ||||||||||||||  |||||| |||||||  |||||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  24911076 aaaccaaaccaatgcagtttggattggttcggtttgtgcggtttattgcgagataaaaaaaatattacattaactctaatattgccaacttgttacaaaa 24910977  T
Q  202 taaacataagatattttattttgctgtttatatgataa 239  Q
    |||||||| || |||||||||| |||||||||||||||    
T  24910976 taaacataggacattttattttactgtttatatgataa 24910939  T

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Target: chr1; HSP #15
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 5155472 - 5155359
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||| | ||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||    
T  5155472 gcggtgcggtttggtttggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcgatttggtttggttcggttgatttttaaaaagtcat 5155373  T
Q  101 ccaaaccaaaccaa 114  Q
    ||||||||||||||    
T  5155372 ccaaaccaaaccaa 5155359  T

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Target: chr1; HSP #16
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 11898964 - 11899180
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| ||||| |||| |||| |||| |||| |||||||||||||| ||||||||| |||| |||||||||     ||||||||||||||||| ||||    
T  11898964 gcggtgcggtttgattcggttttgagcaaaaaagtcatccaaaccgcgcgataaaaaaacatgtggtttggtt-----cggttgatttttaaaaaatcat 11899058  T
Q  101 ccaaaccaaaccaa----------tgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaa---aatattacattaactctaatattgcc 187  Q
    ||||||||||||||          | ||||||||||||||||  |||||| |||||||| |||||| ||||   ||||||||||||||||||||||| ||    
T  11899059 ccaaaccaaaccaaactaaaccaatacggtttggattggttcggtttgtgcggtttatcgcgagataaaaaaaaaatattacattaactctaatatttcc 11899158  T
Q  188 aacttgttgcaaaataaacata 209  Q
    || ||||| |||||||||||||    
T  11899159 aaattgttacaaaataaacata 11899180  T

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Target: chr1; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 36203572 - 36203479
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||||||  ||||||||| |||| ||  ||||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||| ||||||||    
T  36203572 gcggtgcgatttggttcggttttgaggttaaaagtcatccaaaccgcaagataaaaaagcatgcggtttgatttggttcggttgacttttaaaa 36203479  T

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Target: chr1; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 27507620 - 27507492
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| |||| || |||||| |||||| |||||| ||||||| ||| ||||  |||||||| |||||||||| ||||||||    ||    
T  27507620 gcggtgcggtttggttcggttttgagaataaaagtcatccgaaccgcaagataaataagtatgcaatttggtttagttcggttgacttttaaaataaaat 27507521  T
Q  101 ccaaaccaaaccaatgcggtttggattgg 129  Q
    ||||| ||||||||||  |||||||||||    
T  27507520 ccaaatcaaaccaatgatgtttggattgg 27507492  T

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Target: chr1; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 34914089 - 34914215
Alignment:
Q  3 ggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatcc 102  Q
    ||||||||||||||||||||| ||   |||| |||||||||| |||| ||||||||| |||| |||||||||  || |||||| ||||||||    || |    
T  34914089 ggtgcagtttggttcgattttgaggtgaaaagtcatccaaactgcgaaataaaaaagtatgcagtttggtttgctttggttgacttttaaaataaaattc 34914188  T
Q  103 aaaccaaaccaatgcggtttggattgg 129  Q
     ||||||||||||| ||||||||||||    
T  34914189 gaaccaaaccaatgtggtttggattgg 34914215  T

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Target: chr1; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 191
Target Start/End: Complemental strand, 5155352 - 5155260
Alignment:
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgccaact 191  Q
    ||||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| |||||||||||||||||||| ||||||    
T  5155352 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattaccaact 5155260  T

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Target: chr1; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 21685671 - 21685578
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||||||||||||||||| |||||||  ||||| |||||  |||||| ||||| ||| |||||||||||||||| |||| ||||| ||||||||    
T  21685671 gcggtgcagtttggttcggttttaaggctaaaagtcatctgaaccgcaagatacaaatgcatgcggtttggtttggttcagttgacttttaaaa 21685578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 35980516 - 35980423
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||| |||||||||| |||| ||  ||||| |||||| |||||| || |||||||||||| |||||||||||||||| |||| ||||||||    
T  35980516 gcggtgcggtttggttcggttttgaggctaaaagtcatccgaaccgcaaggtaaaaaagcatgtggtttggttttgttcgattgacttttaaaa 35980423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 2490157 - 2490064
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||||||||||||||||||| ||  ||||| | |||| |||||| ||||||| ||| ||||| |||||||| |||| ||||| ||||||||    
T  2490157 gcggtgcagtttggttcgattttgaggctaaaagttatccgaaccgcaagataaataagtatgcgatttggtttggttcagttgacttttaaaa 2490064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 16537957 - 16537838
Alignment:
Q  10 tttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaa 109  Q
    |||||||||||||| |   ||||| ||||| ||||||| |||||||||| ||||||||||| ||| ||| |||| | ||||||||    |||| ||||||    
T  16537957 tttggttcgattttgaaggtaaaagtcatctaaaccgcaagataaaaaaacatgcggtttgatttggtttggttcacttttaaaataaaatccgaaccaa 16537858  T
Q  110 accaatgcggtttggattgg 129  Q
    |||||||| |||||| ||||    
T  16537857 accaatgcagtttgggttgg 16537838  T

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Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 35980369 - 35980304
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||| |||||| |||||| || |||||||||||| |||||||||||||| |||||| ||||||||    
T  35980369 taaaagtcatccgaaccgcaaggtaaaaaagcatgtggtttggttttgtttggttgacttttaaaa 35980304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 17651756 - 17651798
Alignment:
Q  52 taaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||||||||||||||| |||||||||||||| ||||||||    
T  17651756 taaaaaagcatgcggtttgattttgttcggttgacttttaaaa 17651798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 8165652 - 8165587
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||||||||||| ||||||  |||||| |||||||||||||||||  |||||||||| ||| ||||    
T  8165652 taaaaatcatccgaaccgcaggataaagaagcatgcggtttggttcggttcggttgactttaaaaa 8165587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 33769936 - 33769981
Alignment:
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggttt 146  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||||    
T  33769936 ccaaaccaaaccaatgcggtttggattggttcagttgttgtggttt 33769981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 9330381 - 9330433
Alignment:
Q  42 aaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||| ||||||||||||| ||| |||||||||| |||||||||| ||||||||    
T  9330381 aaccacgagataaaaaagtatgtggtttggtttagttcggttgacttttaaaa 9330433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 12973513 - 12973606
Alignment:
Q  1 gcggtgcagtttggttcgatttt-aagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||| |||||||||| |||| |||| | ||| |||||| |||||| ||||||| ||  |||||||||||||| ||| |||||||||| ||||    
T  12973513 gcggtgcggtttggttcggttttgaagc-tgaaagtcatccgaaccgcaagataaataaatatgcggtttggtttggtttggttgattttgaaaa 12973606  T

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Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 39158342 - 39158297
Alignment:
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggttt 146  Q
    |||||||||||||||| ||||||| |||| |||||| |||||||||    
T  39158342 ccaaaccaaaccaatgtggtttgggttggatcaattggtgtggttt 39158297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 40095550 - 40095457
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||| |||||||||| |||| ||  ||||| | |||| |||||| ||||||| ||  ||||||||||| ||  ||||||| ||||||||||    
T  40095550 gcggtgcggtttggttcggttttgaggttaaaagttatccgaaccgcaagataaataaatatgcggtttggcttgtttcggtttatttttaaaa 40095457  T

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Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 50471208 - 50471293
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaa 114  Q
    ||||| |||||| |||||  | ||||||||| |||||||||||||| |||| ||||  ||||||||    ||||||||||||||||    
T  50471208 taaaagtcatccgaaccgtaaaataaaaaagtatgcggtttggtttggttcagttgcattttaaaataaaatccaaaccaaaccaa 50471293  T

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Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 25866883 - 25866794
Alignment:
Q  3 ggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||| ||||||||||| ||| |   ||||||||||||||||| | ||||||||    || ||||||||||| |||||||||| ||||||||    
T  25866883 ggtgcggtttggttcgagttttatgttaaaaatcatccaaaccacaagataaaatt--attcggtttggtttagttcggttgacttttaaaa 25866794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 48996046 - 48996276
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaacca 108  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||    
T  48996046 gtttggttcgattttaatcataaaaatcatccaaaccgcgaaataaaaaagcatgtggtttggtttggttcggttgatttttaaaaagttatccaaacca 48996145  T
Q  109 aaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacat 208  Q
    ||||||||||| |||||||||||| ||||||| |||||||| | |||| |||||||||||||||||||||||||||| ||||||||  ||||||||||||    
T  48996146 aaccaatgcggcttggattggttcgatttgtgcggtttatcgcaagataaaaaaatattacattaactctaatattgtcaacttgtcacaaaataaacat 48996245  T
Q  209 aagatattttattttgctgtttatatgataa 239  Q
    | || ||||||||||| |||||  |||||||    
T  48996246 aggaaattttattttgttgttttcatgataa 48996276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30194105 - 30193866
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaa-gcatgcggtttggttttgttcggttgatttttaaaaagtca 99  Q
    ||||||| ||||| ||||  |||||| | |||| |||| ||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  30194105 gcggtgcggtttgattcgggtttaagtaaaaaagtcattcaaaccgtgagataaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtca 30194006  T
Q  100 tccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaa 199  Q
    |||||||||||||||||||||||||||||||||  ||| || |||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||    
T  30194005 tccaaaccaaaccaatgcggtttggattggttcggtttatgcggtttatcgcgagataaaaaaatattacattaactctaatattgccaacttgttacaa 30193906  T
Q  200 aataaacataagatattttattttgctgtttatatgataa 239  Q
    |||||||||| || ||||||||||| ||||||||||||||    
T  30193905 aataaacataggacattttattttgatgtttatatgataa 30193866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 52344691 - 52344926
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||| | |||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||     || || ||||||||||||||||    
T  52344691 gcggtgcggtttgggttgattttgagcataaaagtcatccaaaccgtgagataaaaaagcatgcggtttggtt-----cgattaatttttaaaaagtcat 52344785  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 200  Q
    ||||||||||||||||||| ||||||||||||  |||||| |||||||||| |||| |||||||||| ||||||||||||||||||||||||||| ||||    
T  52344786 ccaaaccaaaccaatgcggattggattggttcggtttgtgcggtttatcacaagataaaaaaatattccattaactctaatattgccaacttgttacaaa 52344885  T
Q  201 --ataaacataagatattttattttgctgtttatatgataa 239  Q
      |||||||||||||||||||||||||||||||||||||||    
T  52344886 atataaacataagatattttattttgctgtttatatgataa 52344926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 40900212 - 40899970
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  40900212 gcggtgcggtttggttcggttttgagcataaaagtcatccaaactgcgagataaaaaagcatgcggtttggtttggttcagttgatttttaaaaagtcat 40900113  T
Q  101 ccaaaccaaa-----ccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgtt 195  Q
    ||||||||||     |||||||||||||||||||||   |||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||| ||    
T  40900112 ccaaaccaaaccaaaccaatgcggtttggattggtttggtttgtgcggtttatcgcgagat-aaaaaatattacattaactctaatattgccaacttatt 40900014  T
Q  196 gcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
     ||||||||||||| |  ||||||||||| ||||||||||||||    
T  40900013 acaaaataaacatagggcattttattttgttgtttatatgataa 40899970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 40806939 - 40806703
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaacca 108  Q
    |||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||    
T  40806939 gtttggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcgatttggtttggttcggttgatttttaaaaaatcatccaaacca 40806840  T
Q  109 aa-----ccaatgcggtttggattggttcaatttgtgtggtttatcacgagat-gaaaaaatattacattaactctaatattgccaacttgttgcaaaat 202  Q
    ||     ||||||| ||||||||||||||  |||||| |||||||||||||||  |||||||||||||||||||||||||||| ||||||||| || |||    
T  40806839 aaccaaaccaatgcagtttggattggttcggtttgtgcggtttatcacgagataaaaaaaatattacattaactctaatattgtcaacttgttacataat 40806740  T
Q  203 aaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||| || ||||||||||| ||||||||||||||    
T  40806739 aaacataggacattttattttgttgtttatatgataa 40806703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 6333270 - 6333513
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| ||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||    
T  6333270 gcggtgcggtttggttcgattttgagcaaaaaagtcatccaaaccgcgagataaaaaagcatgcggtttggttt-----ggttgatttttaaaaagtcat 6333364  T
Q  101 ccaa----------accaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaac 190  Q
    ||||          ||||||||||||||||||||||||||||  |||||| |||||||| |||||| |||||| |||||||||||||||||||| |||||    
T  6333365 ccaaatcaaaccaaaccaaaccaatgcggtttggattggttcggtttgtgcggtttatcgcgagataaaaaaaaattacattaactctaatattaccaac 6333464  T
Q  191 ttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||| ||||||||||||| || ||||||||||| ||||||||||||||    
T  6333465 ttgttacaaaataaacataggacattttattttgatgtttatatgataa 6333513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 43630531 - 43630769
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| ||||||||||||||| || |||||| |||||||||||| |||||||||||  |||||||||||||| ||| |||||||||||||||||||||    
T  43630531 gcggtgcggtttggttcgattttgagtataaaagtcatccaaaccgtgagataaaaaaatatgcggtttggtttggtttggttgatttttaaaaagtcat 43630630  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 200  Q
    ||||| ||||||||||||| ||||||||||||  ||||||  |||||||  ||||| |||||| ||||||||||||||||||||||  | ||||| | ||    
T  43630631 ccaaatcaaaccaatgcggcttggattggttcggtttgtgcagtttatcgtgagataaaaaaaaattacattaactctaatattgcatatttgttacgaa 43630730  T
Q  201 ataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||||| || ||||||||||| ||||||||||||||    
T  43630731 ataaacataggacattttattttgttgtttatatgataa 43630769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 23937628 - 23937408
Alignment:
Q  20 ttttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatgcgg 119  Q
    |||| ||||||||| ||||| ||||  ||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  23937628 ttttgagcataaaagtcatctaaactacgagataaaaaaatatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcag 23937529  T
Q  120 tttggattggttcaatttgtgtggtttatcacgaga-tgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacataagatatttt 218  Q
     ||||||||||||  |||||| |||||||  ||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||||||| || |||||    
T  23937528 cttggattggttcggtttgtgcggtttattgcgagattaaaaaaatattacattaactctaatattgcaaacttgttacaaaataaacataggacatttt 23937429  T
Q  219 attttgctgtttatatgataa 239  Q
    |||||| ||||||||||||||    
T  23937428 attttgttgtttatatgataa 23937408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 32136649 - 32136889
Alignment:
Q  4 gtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatcca 103  Q
    |||| |||||||||| |||| | ||||||| ||| ||||||| ||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||    
T  32136649 gtgcggtttggttcggttttgaacataaaagtcacccaaacctcgagataaaaaagcatgcgatttggtttggttcgattgatttttaaaaattcatcca 32136748  T
Q  104 a-----accaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgca 198  Q
    |     ||||||||||||||||||||||||||||  |||||| ||||||||  ||||| |||||||||||||||||||||||||||| ||||||||  ||    
T  32136749 aaccaaaccaaaccaatgcggtttggattggttcggtttgtgcggtttatcgtgagataaaaaaatattacattaactctaatattgtcaacttgtaaca 32136848  T
Q  199 aaataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||||||| || ||||||||||| ||||||||||||||    
T  32136849 aaataaacataggacattttattttgttgtttatatgataa 32136889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 10218632 - 10218880
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    |||||||  ||||||||| |||| ||||||||| ||||| ||||| | ||||||||||||||||||||||||||  ||| ||||||||||| | ||||||    
T  10218632 gcggtgcgttttggttcggttttgagcataaaagtcatctaaacctcaagataaaaaagcatgcggtttggtttgattcagttgatttttatatagtcat 10218731  T
Q  101 ccaa----------accaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaac 190  Q
    ||||          ||||||||||||||||||||||||||||  |||||  |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10218732 ccaaacaaaaccaaaccaaaccaatgcggtttggattggttcggtttgtacggtttatcgcgagatgaaaaaatattacattaactctaatattgccaac 10218831  T
Q  191 ttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||| ||||||||||||| || ||||||||||| ||||||||||||||    
T  10218832 ttgttacaaaataaacataggacattttattttgttgtttatatgataa 10218880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 5262085 - 5261856
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaacca 108  Q
    ||||| |||| |||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  5262085 gtttgattcggttttgagcataaaagtcatccaaaccgcaagataaaaaagcatgcggtttggtttagttcagttgatttttaaaaagtcatccaaacca 5261986  T
Q  109 aaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacat 208  Q
    |||||||   | ||||||||||||  ||  || |||||||| ||||||  |||||||||||||||||||||||||||||||||||||  |||||||||||    
T  5261985 aaccaatttagcttggattggttcggttgatgcggtttatcgcgagat-taaaaatattacattaactctaatattgccaacttgttaaaaaataaacat 5261887  T
Q  209 aagatattttattttgctgtttatatgataa 239  Q
      || ||||||||||| |||||| |||||||    
T  5261886 tggacattttattttgttgtttacatgataa 5261856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 8176713 - 8176488
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaacca 108  Q
    |||| |||| ||||| || |||||| |||| ||||| |  ||||||||| ||||||||||||||||     |||||||||||||||||||||| ||||||    
T  8176713 gtttagttcaattttgaggataaaagtcattcaaactgtaagataaaaacgcatgcggtttggttt-----ggttgatttttaaaaagtcatctaaacca 8176619  T
Q  109 aaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacat 208  Q
    ||||||||||| ||||||||||||  |||||| ||||||||  || || |||||||||||||||||||||||||||||| ||||||| |||||||||||     
T  8176618 aaccaatgcggcttggattggttcggtttgtgcggtttatcgtgaaataaaaaaatattacattaactctaatattgcccacttgttacaaaataaacac 8176519  T
Q  209 aagatattttattttgctgtttatatgataa 239  Q
    | || ||||||||||||||||||||||||||    
T  8176518 aggacattttattttgctgtttatatgataa 8176488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 36077526 - 36077718
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| |||||| |||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||    
T  36077526 gcggtgcggtttggttcggtttcaagcataataatcattcaaaccgcgagagaaaaaagtatgcggtttggtttggttcggttgatttttaaaaagtcat 36077625  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgccaact 191  Q
    ||||||||||||||| ||||||||||||||||| ||  || |||| ||| |||||| |  ||||| |||||||||||||||||||||||||||    
T  36077626 ccaaaccaaaccaatacggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgccaact 36077718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 51394672 - 51394910
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    |||||||||||||||||  |||| ||||||||| |||||||||||||||||||||||||||||||||||| ||     |||||||||||||||||||| |    
T  51394672 gcggtgcagtttggttcagttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttgatt-----cggttgatttttaaaaagtctt 51394766  T
Q  101 -----ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgtt 195  Q
         |||||||||||||||| |  || |||||||||| ||  || |||||||| |||||| ||||||||||||||||| ||||||||||||||||| ||    
T  51394767 tccaaccaaaccaaaccaatgtgactttgattggttcagttgatgcggtttatcgcgagataaaaaaatattacattaattctaatattgccaacttatt 51394866  T
Q  196 gcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
     ||||||||||||| || ||||||| |||||||||| |||||||    
T  51394867 acaaaataaacataggacattttatattgctgtttacatgataa 51394910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 29644254 - 29644052
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| || ||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  29644254 gcggtgcggtttggttcggtttcaaacataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 29644155  T
Q  101 ccaaaccaaa----------ccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgcca 188  Q
    ||||||||||          ||||||||||||||||||||||||||  || |||| ||| |||||| |  ||||| ||||||||||||||||||||||||    
T  29644154 ccaaaccaaaccaaaccaaaccaatgcggtttggattggttcaattgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgcca 29644055  T
Q  189 act 191  Q
    |||    
T  29644054 act 29644052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 50571087 - 50570885
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  50571087 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 50570988  T
Q  101 ccaaaccaaa----------ccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgcca 188  Q
    ||||||||||          ||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| ||||||||||||||||||||||||    
T  50570987 ccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgcca 50570888  T
Q  189 act 191  Q
    |||    
T  50570887 act 50570885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 29636727 - 29636929
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||    
T  29636727 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagccat 29636826  T
Q  101 ----------ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgcca 188  Q
              ||||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| ||||||||||||||||||||||||    
T  29636827 ccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgcca 29636926  T
Q  189 act 191  Q
    |||    
T  29636927 act 29636929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 42557678 - 42557880
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| |||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  42557678 gcggtgcggtttggttcggtttcaagcataataatcattcaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 42557777  T
Q  101 c----------caaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgcca 188  Q
    |          |||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| ||||||||||||||||||||||||    
T  42557778 ccaaaccaaatcaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgcca 42557877  T
Q  189 act 191  Q
    |||    
T  42557878 act 42557880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 13690969 - 13690872
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaac 106  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| | ||||| |||  ||||||||||||||||||||||||||||||    
T  13690969 gtttggttcgattttaagcataaaagtcatccaaaccgcgagataataaaacatacagtttgatttgattcggttgatttttaaaaagtcatccaaac 13690872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 48293534 - 48293406
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    |||||||||||||||||| |||| ||  ||||| |||||| |||||| || ||||||||||||||||||||||| |||||||||  ||||||||    ||    
T  48293534 gcggtgcagtttggttcggttttgaggttaaaagtcatccgaaccgcaaggtaaaaaagcatgcggtttggtttggttcggttgtcttttaaaataaaat 48293435  T
Q  101 ccaaaccaaaccaatgcggtttggattgg 129  Q
    || ||||||||||||||||||||| ||||    
T  48293434 ccgaaccaaaccaatgcggtttgggttgg 48293406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 23450113 - 23449985
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    |||||||||||| ||||| |||| ||  ||||| |||||| ||| || ||||||| ||| |||||||||||||| |||||||| | ||||||||  | ||    
T  23450113 gcggtgcagtttagttcggttttgaggttaaaagtcatccgaactgcaagataaataagtatgcggtttggtttggttcggttaacttttaaaatataat 23450014  T
Q  101 ccaaaccaaaccaatgcggtttggattgg 129  Q
    ||| |||||||||||||||||||||||||    
T  23450013 ccacaccaaaccaatgcggtttggattgg 23449985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 31301309 - 31301426
Alignment:
Q  114 atgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaata--ttacattaactctaatattgccaacttgttgcaaaataaacataag 211  Q
    ||||||||||| ||||||| ||| ||| |||||||| |||||| |||||| |  || ||||||||||||||||||||||||||| ||||||||||||| |    
T  31301309 atgcggtttggtttggttcgattagtgcggtttatcgcgagataaaaaaaaaaattccattaactctaatattgccaacttgttacaaaataaacatagg 31301408  T
Q  212 atattttattttgctgtt 229  Q
    |  |||||||||| ||||    
T  31301409 acgttttattttgttgtt 31301426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 23120386 - 23120273
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| ||||| ||||||||| |   ||||| |||||| |||||| |||||||||||||||||||||||||| ||||| |||| ||| |||||  |||    
T  23120386 gcggtgcggtttgattcgattttgaaggtaaaagtcatccgaaccgcaagataaaaaagcatgcggtttggtttggttcgattgactttaaaaaaaacat 23120287  T
Q  101 ccaaaccaaaccaa 114  Q
    ||||||||||||||    
T  23120286 ccaaaccaaaccaa 23120273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 31301249 - 31301328
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcg 80  Q
    ||||||||||||||||   |||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||    
T  31301249 gcggtgcagtttggtttagttttgagcataaaagtcatccaaaccgcgagataaaaaaacatgcggtttggtttggttcg 31301328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 48338295 - 48338407
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    |||||||||||||||||| |||||||  ||||| |||||| |||||  |||||||||| ||||| ||||||||| |||||||||| ||||||||    ||    
T  48338295 gcggtgcagtttggttcggttttaaggttaaaagtcatccgaaccgtaagataaaaaa-catgcagtttggtttggttcggttgacttttaaaataaaat 48338393  T
Q  101 ccaaaccaaaccaa 114  Q
    ||||||||||||||    
T  48338394 ccaaaccaaaccaa 48338407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 45983339 - 45983465
Alignment:
Q  3 ggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatcc 102  Q
    ||||||||||||||||  ||| |  |||||| | |||  |||||| |||||||||| |||||||||||||||  ||||||||| ||| ||||   |||||    
T  45983339 ggtgcagtttggttcggctttgaagataaaagttatctgaaccgcaagataaaaaatcatgcggtttggtttgattcggttgactttaaaaataacatcc 45983438  T
Q  103 aaaccaaaccaatgcggtttggattgg 129  Q
    ||||||||| |||||||||||| ||||    
T  45983439 aaaccaaactaatgcggtttgggttgg 45983465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 41325057 - 41325172
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaacca 108  Q
    |||||||||| |||||||  | ||| ||||   |||||||||||||| ||| |||||||||| |||  ||||||||| |||||||     |||| |||||    
T  41325057 gtttggttcggttttaagattgaaagtcatttgaaccgcgagataaataagtatgcggtttgatttaattcggttgacttttaaa-----atccgaacca 41325151  T
Q  109 aaccaatgcggtttggattgg 129  Q
    |||||||||||||||||||||    
T  41325152 aaccaatgcggtttggattgg 41325172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 5122513 - 5122366
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaa---aaagt 97  Q
    ||||||| |||||||||| |||| ||  ||||| ||||  ||||| | |||||||||||||||||||||| ||| |||||||||| ||| ||   ||| |    
T  5122513 gcggtgcggtttggttcggttttgagggtaaaagtcatataaaccacaagataaaaaagcatgcggtttgatttggttcggttgactttaaaaataaaat 5122414  T
Q  98 c--atccaaaccaaaccaatgcggtttggattggttcaatttgtgtgg 143  Q
    |  | |||||||||||||||| ||| ||| |||| || ||||||||||    
T  5122413 ccgaaccaaaccaaaccaatgtggtctgggttggatcgatttgtgtgg 5122366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 20986403 - 20986468
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||| ||||||||||||| ||||||| ||| |||||||||||||| |||||||||| || |||||    
T  20986403 taaaagtcatccaaaccgcaagataaacaagtatgcggtttggtttggttcggttgacttataaaa 20986468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 32223448 - 32223355
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||| ||||| |||| |||| ||  ||||| ||||||||| ||  ||||||||||||||||||||||| ||||||| ||| | ||||||||    
T  32223448 gcggtgcggtttgattcggttttgaggttaaaagtcatccaaatcgaaagataaaaaagcatgcggtttggatttgttccgtttacttttaaaa 32223355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 41260228 - 41260280
Alignment:
Q  3 ggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaa 55  Q
    ||||| |||||||||| |||| |||||||||||||||| ||||||||||||||    
T  41260228 ggtgcggtttggttcggttttgagcataaaaatcatcctaaccgcgagataaa 41260280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 23626027 - 23625937
Alignment:
Q  4 gtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||||||| ||| |||||||  ||||| ||||||||| | | | ||||||||| ||||||||| |||| ||||| |||| ||||||||    
T  23626027 gtgcagtttggctcggttttaaggttaaaagtcatccaaatcacaaaataaaaaagtatgcggttttgtttggttcgcttgacttttaaaa 23625937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 48602606 - 48602520
Alignment:
Q  43 accgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 129  Q
    ||||| ||||||||| |  ||||||||||||| |||||||||| ||| ||||    |||| ||||||||||||||||||||| ||||    
T  48602606 accgcaagataaaaatgtttgcggtttggtttggttcggttgactttgaaaatacaatcctaaccaaaccaatgcggtttgggttgg 48602520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 42198743 - 42198819
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgtt 78  Q
    ||||||||||||||||||||||| ||  ||||  |||||  |||||| |||||||||| |||||||||| ||||||||    
T  42198743 gcggtgcagtttggttcgattttgaggttaaatgtcatcataaccgcaagataaaaaa-catgcggttttgttttgtt 42198819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 18536770 - 18536680
Alignment:
Q  4 gtgcagtttggttcgatttt-aagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||||| ||||| |||| |||| ||||| ||||||||||| | |||||||||||||  | |||||| || |||||||||| ||||||||    
T  18536770 gtgcagttttgttcggttttgaagc-taaaattcatccaaaccacaagataaaaaagcacacagtttgggttggttcggttgacttttaaaa 18536680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 29232767 - 29232834
Alignment:
Q  62 tgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 129  Q
    ||||||||||||| |||||||||| ||||||||    |||| ||| ||||||||||| ||||||||||    
T  29232767 tgcggtttggtttagttcggttgacttttaaaataaaatccgaactaaaccaatgcgatttggattgg 29232834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 51907068 - 51907129
Alignment:
Q  48 gagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaa 114  Q
    ||||||||||||||| ||||| |||||     |||||| |||||||||||||||| |||||||||||    
T  51907068 gagataaaaaagcatacggttcggttt-----ggttgacttttaaaaagtcatccgaaccaaaccaa 51907129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 15723863 - 15723948
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaa 114  Q
    |||||||||||  |||||  | ||||||||| |||| |||| |||| |||||||||| ||| ||||   |||||||||||||||||    
T  15723863 taaaaatcatctgaaccgtaatataaaaaagtatgcagtttagtttggttcggttgactttaaaaataacatccaaaccaaaccaa 15723948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 28147836 - 28147864
Alignment:
Q  99 atccaaaccaaaccaatgcggtttggatt 127  Q
    |||||||||||||||||||||||||||||    
T  28147836 atccaaaccaaaccaatgcggtttggatt 28147864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 54274118 - 54274066
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcgg 81  Q
    ||||| |||||| |||||| ||||| |||| ||||||||||||||| ||||||    
T  54274118 taaaactcatccgaaccgcaagatagaaaatcatgcggtttggtttggttcgg 54274066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 10590804 - 10591039
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10590804 gcggtgcggtttggttcggttttgagcataaaagtcatccaaactgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 10590903  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagat---gaaaaaatattacattaactctaatattgccaacttgt-tg 196  Q
    || |||||||||||||||| ||||||||||||  |||||| |||||||||||||||    ||||||||||||||||||||||||||||||||||| | |     
T  10590904 cccaaccaaaccaatgcggcttggattggttcggtttgtgcggtttatcacgagataaaaaaaaaatattacattaactctaatattgccaacttatata 10591003  T
Q  197 caaaataaacataagatattttattttgctgtttat 232  Q
    ||||||||||||| || |||||||||| ||||||||    
T  10591004 caaaataaacatatgacattttattttactgtttat 10591039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 15859679 - 15859921
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| |||| ||||||||| || ||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| ||||||    
T  15859679 gcggtgccgtttggttcggttttgagcataaaagtcttccaaaccgcgagattaaaaagcatgcggtttggtttgattcggttgatttttaaatagtcat 15859778  T
Q  101 ccaaacca--------aaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaactt 192  Q
    ||||||||        ||||||||||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15859779 ccaaaccaaaccaccaaaccaatgcggtttggattggttcggtttgtgcggtttatcgcgagatgaaaaaatattacattaactctaatattgccaactt 15859878  T
Q  193 gttgcaaaataaacataagatattttattttgctgtttatatg 235  Q
    |||  |||||||||||| || ||||||||||| ||||||||||    
T  15859879 gttagaaaataaacataggacattttattttgttgtttatatg 15859921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 239
Target Start/End: Complemental strand, 10391143 - 10390912
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaa-gtcatccaaacc 107  Q
    |||||||||| |||| ||||||||| |||| | ||||||||||||||||||||||| ||||||||| ||||  ||||||| |||||| ||||||||||||    
T  10391143 gtttggttcggttttgagcataaaagtcattcgaaccgcgagataaaaaagcatgctgtttggtttggttcacttgatttctaaaaaagtcatccaaacc 10391044  T
Q  108 aaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaaca 207  Q
    ||||||| | || ||||||||||||   ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10391043 aaaccaacgtggcttggattggttcggcttgtgcggtttatcacgagataaaaaaatattacattaactctaatattgccaacttgttacaaaataaaca 10390944  T
Q  208 taagatattttattttgctgtttatatgataa 239  Q
    ||||| ||||||||||| ||||||||||||||    
T  10390943 taagacattttattttgttgtttatatgataa 10390912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 35040339 - 35040115
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  35040339 gcggtgcggtttggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggtttggttgatttttaaaaagtcat 35040240  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaa 200  Q
    |||||     ||||||||||||||||||||||  |||||| |||||||| |||||| ||||||||||||||| ||||||||||||||||||| || ||||    
T  35040239 ccaaa-----ccaatgcggtttggattggttcggtttgtgcggtttatcgcgagat-aaaaaatattacattgactctaatattgccaacttattacaaa 35040146  T
Q  201 ataaacataagatattttattttgctgttta 231  Q
    ||||||||| |  ||||||||||| ||||||    
T  35040145 ataaacatagggcattttattttgttgttta 35040115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 12270510 - 12270702
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| || ||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  12270510 gcggtgcggtttggttcggtttcaaacataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 12270609  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgccaact 191  Q
    ||||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| |||||||||||||||||||||||||||    
T  12270610 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgccaact 12270702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5288033 - 5287794
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| |||| |||||  || |||||||||| |||||||||| || ||||| ||||||||| |||||||||||||||||||||||||    
T  5288033 gcggtgcggtttggttcggttttgagcatttaagtcatccaaactgcgagataaataaacatgcagtttggtttggttcggttgatttttaaaaagtcat 5287934  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagat-gaaaaaatattacattaactctaatattgccaacttgttgcaa 199  Q
    |||||| |||||||| ||| ||||||||||||  || ||| |||||||| | ||||  |||||| |||||||||||||||||||||||||||| |  |||    
T  5287933 ccaaacgaaaccaatacggcttggattggttcggttagtgcggtttatcgcaagataaaaaaaaaattacattaactctaatattgccaacttataacaa 5287834  T
Q  200 aataaacataagatattttattttgctgtttatatgataa 239  Q
    |||||||||| |  |||||||||| |||||||||||||||    
T  5287833 aataaacatatgtcattttatttttctgtttatatgataa 5287794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 33550281 - 33550520
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaacca 108  Q
    ||||| |||| |||| ||||||||| |||||||||||| | ||||||||| ||||  |||| |||| |||||||||||||||||||||||||||||||||    
T  33550281 gtttgattcggttttgagcataaaagtcatccaaaccgagggataaaaaaacatgatgtttagtttggttcggttgatttttaaaaagtcatccaaacca 33550380  T
Q  109 aaccaa----------tgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgca 198  Q
    ||||||          |||||||||||||| ||| ||||||| |||||||| || ||| ||||||||||||||||||||||| |||||||||||||| ||    
T  33550381 aaccaaaccaaaccaatgcggtttggattgattcgatttgtgcggtttatcgcgggat-aaaaaatattacattaactctaaaattgccaacttgttaca 33550479  T
Q  199 aaataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||||||||| || || |||||||| ||||||||||||||    
T  33550480 aaataaacataggacatgttattttgttgtttatatgataa 33550520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 25136726 - 25136968
Alignment:
Q  2 cggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatc 101  Q
    |||||| |||||||||| |||| |||||| || | |||||||| | || |||||||||||||||||| ||||| |||||||||  |||||||||||||||    
T  25136726 cggtgcggtttggttcggttttgagcatacaagtgatccaaacagtgaaataaaaaagcatgcggttcggtttggttcggttggattttaaaaagtcatc 25136825  T
Q  102 caa-----accaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttg 196  Q
    |||     ||||||||||||| |||| |||||||||  |||||| |||||||| | ||||  |||||||| |||||||||||||||||| |||||||||     
T  25136826 caaaccaaaccaaaccaatgcagtttagattggttcggtttgtgcggtttatcgcaagatataaaaatatgacattaactctaatattgtcaacttgtta 25136925  T
Q  197 caaaataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||| ||||||| || ||||||||||| ||||||||||||||    
T  25136926 caaaacaaacataggacattttattttgttgtttatatgataa 25136968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 13802066 - 13801863
Alignment:
Q  46 gcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaa----------tgcggtttggattggttcaat 135  Q
    ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||          ||||||||||||||||||  |    
T  13802066 gcgagataaaaaagcatacggtttggtttggttcagttgatttttaaaaagtcatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcggt 13801967  T
Q  136 ttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaacttgttgcaaaataaacataagatattttattttgctgtttatatg 235  Q
    ||| | |||||| |  ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||  | ||||||||||| ||||||||||    
T  13801966 ttgagcggtttagcgtgagataaaaaaatattacattaactctaatattgccaatttgttacaaaataaacatagaacattttattttgatgtttatatg 13801867  T
Q  236 ataa 239  Q
    ||||    
T  13801866 ataa 13801863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 5874281 - 5874168
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  5874281 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 5874182  T
Q  101 ccaaaccaaaccaa 114  Q
    ||||||||||||||    
T  5874181 ccaaaccaaaccaa 5874168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 10494510 - 10494397
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||| | |||| ||||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||    
T  10494510 gcggtgcggtttggtttggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatggggtttgatttggttcggttgatttttaaaaagtcat 10494411  T
Q  101 ccaaaccaaaccaa 114  Q
    |||||| |||||||    
T  10494410 ccaaactaaaccaa 10494397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 13810990 - 13810885
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaacca 108  Q
    |||||||| | |||| |||| |||| |||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||    
T  13810990 gtttggtttggttttgagcaaaaaagtcatccaaaccgcgagataaaaaagcatacggtttggtttggttcagttgatttttaaaaagtcatccaaacca 13810891  T
Q  109 aaccaa 114  Q
    ||||||    
T  13810890 aaccaa 13810885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 9686015 - 9686139
Alignment:
Q  5 tgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaa 104  Q
    ||||||||||||||||||| ||  | ||| |||||  |||||| ||||||| ||| |||||||||||||| |||||||| | ||||||||    |||| |    
T  9686015 tgcagtttggttcgattttgaggctcaaagtcatctgaaccgcaagataaataagtatgcggtttggtttggttcggttaacttttaaaataaaatccga 9686114  T
Q  105 accaaaccaatgcggtttggattgg 129  Q
    |||||||||||||||||||||||||    
T  9686115 accaaaccaatgcggtttggattgg 9686139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 24645078 - 24644954
Alignment:
Q  4 gtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatcca 103  Q
    |||| ||||||||||||||| ||  ||||| |||||| |||||| ||||||| ||| ||||||||||||||  ||| ||||| ||||||||    |||||    
T  24645078 gtgcggtttggttcgattttgaggttaaaagtcatccgaaccgcaagataaataagtatgcggtttggtttgattc-gttgacttttaaaataaaatcca 24644980  T
Q  104 aaccaaaccaatgcggtttggattgg 129  Q
    |||||||||||||| |||||||||||    
T  24644979 aaccaaaccaatgcagtttggattgg 24644954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 892470 - 892377
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||| ||||||||| ||||||||  ||||| |||||| |||||| | |||||||| ||||||||||||||| |||||||| | ||||||||    
T  892470 gcggtgcggtttggttcaattttaaggctaaaagtcatccgaaccgcaaaataaaaaaacatgcggtttggtttggttcggttaacttttaaaa 892377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 30752525 - 30752576
Alignment:
Q  42 aaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaa 93  Q
    |||||| |||||||||||||||||||||||||| |||||||||| |||||||    
T  30752525 aaccgcaagataaaaaagcatgcggtttggtttggttcggttgacttttaaa 30752576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 6266857 - 6266987
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| ||||||| || |||| ||  ||| | |||||| |||||  | |||||||| ||||||||||||||| || ||||||| |||||||| |  |     
T  6266857 gcggtgcggtttggtacggttttgaggttaatagtcatccgaaccgtaaaataaaaaaacatgcggtttggtttggtacggttgacttttaaaatgaaaa 6266956  T
Q  101 ccaaaccaaaccaatgcggtttggattggtt 131  Q
    ||||||||||| |||| | ||||||||||||    
T  6266957 ccaaaccaaacaaatgtgttttggattggtt 6266987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 29048080 - 29048206
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||| |||||||  ||||| |||||||||||   || |||||| |  |||| |||||||| |||||||||| ||||||||    ||    
T  29048080 gcggtgcggtttggttcggttttaaggttaaaagtcatccaaaccataaggtaaaaaggtgtgcgatttggtttggttcggttgacttttaaaataaaat 29048179  T
Q  101 ccaaaccaaaccaatgcggtttggatt 127  Q
    || ||| ||||||||||| ||||||||    
T  29048180 ccgaactaaaccaatgcgatttggatt 29048206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 10494334 - 10494269
Alignment:
Q  166 ttacattaactctaatattgccaacttgttgcaaaataaacataagatattttattttgctgttta 231  Q
    ||||||||||| ||||||||||||||| || ||||||||||||| || ||||||||| | ||||||    
T  10494334 ttacattaactataatattgccaacttattacaaaataaacataggaaattttatttagttgttta 10494269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 14940665 - 14940573
Alignment:
Q  37 atccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 129  Q
    |||| |||||| |||||||||| ||||| ||||||||| |||||||||| |||| |||    |||| ||||||||||| ||||||||| ||||    
T  14940665 atccgaaccgcaagataaaaaaacatgcagtttggtttggttcggttgactttttaaataaaatccgaaccaaaccaacgcggtttgggttgg 14940573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 94
Target Start/End: Original strand, 22413793 - 22413884
Alignment:
Q  3 ggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    ||||||||||| || | |||| ||  ||||| |||||| ||||   ||||||| ||| |||||||||||||| |||||||||| ||||||||    
T  22413793 ggtgcagtttgatttggttttgaggttaaaagtcatccgaaccagaagataaataagtatgcggtttggtttggttcggttgacttttaaaa 22413884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 69669 - 69421
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  69669 gcggtgcggtttggttcgattttgagcataaaagtcatccaaaccgcgagataaaaaagcatgtggtttggtttggttcggttgatttttaaaaagtcat 69570  T
Q  101 ccaaaccaaac----------caatgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaac 190  Q
    |||||||||||          ||||| || ||||||||||||  ||| || |||||||| |||||| ||||||||||| |||||||||||||||||||||    
T  69569 ccaaaccaaaccaaaccaaatcaatgtggcttggattggttcggtttatgcggtttatcgcgagataaaaaaatattatattaactctaatattgccaac 69470  T
Q  191 ttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||| ||||||||||||| || ||||||||||| |||||  |||||||    
T  69469 ttgttacaaaataaacataggacattttattttgttgttttcatgataa 69421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 128590 - 128838
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||| |||||||||| |||| ||||||||||||||||||||    
T  128590 gcggtgcggtttggttcgattttgagcataaaagtcatccaaaccgcaagataaaaaagcatgtggtttggtttggttctgttgatttttaaaaagtcat 128689  T
Q  101 ccaaaccaaaccaa----------tgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaac 190  Q
    ||||||| ||||||          ||||| ||||||||||||  |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||    
T  128690 ccaaaccgaaccaaaccaaatcaatgcggcttggattggttcggtttgtgcggtttatcgcgagataaaaaaatattacattaactctaatattgccaac 128789  T
Q  191 ttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    ||||  ||||||||||||| || ||||||||||| |||||  |||||||    
T  128790 ttgtaacaaaataaacataggacattttattttgttgttttcatgataa 128838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 105983 - 106223
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| ||||||||||||||| |||| |||| ||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||| |||||    
T  105983 gcggtgcggtttggttcgattttgagcaaaaaagtcatccaaaccgcaagataaaaaagcatgtggtttggtttggttcggttgatttttaaaatgtcat 106082  T
Q  101 ccaaaccaaaccaa----------tgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattgccaac 190  Q
    ||||||| ||||||          ||||| ||| ||||||||  |||||| ||||||||  ||||| |||||||||||||||||||||||||||||||||    
T  106083 ccaaaccgaaccaaaccaaatcaatgcggcttgaattggttcggtttgtgcggtttatcgagagataaaaaaatattacattaactctaatattgccaac 106182  T
Q  191 ttgttgcaaaataaacataagatattttattttgctgttta 231  Q
    ||||| ||||||||||||| || ||||||||||| ||||||    
T  106183 ttgttacaaaataaacataggaaattttattttgttgttta 106223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 6012 - 5820
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    ||||||| |||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  6012 gcggtgcggtttggttcgatttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 5913  T
Q  101 ccaaaccaaaccaatgcggtttggattggttcaatttgtgtggtttatcacgagatga--aaaaatattacattaactctaatattgccaact 191  Q
    ||||||||||||||||||||||||||||||||| ||  || |||| ||| |||||| |  ||||| |||||||||||||||||||||| ||||    
T  5912 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgcgaact 5820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 40714 - 40461
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgtt----------cggttgattttt 90  Q
    ||||||| |||||||||| |||| ||||||| | |||||||||||| ||||||||||  ||||||||||||||| |||          ||||||||||||    
T  40714 gcggtgcggtttggttcggttttgagcataatagtcatccaaaccgtgagataaaaactcatgcggtttggtttggtttggtttggttcggttgattttt 40615  T
Q  91 aaaaagtcatccaaaccaaaccaa-----tgcggtttggattggttcaatttgtgtggtttatcacgagatgaaaaaatattacattaactctaatattg 185  Q
    ||||||||||||||||||||||||     |||||||||||||||||| || |||| |||||||| |||||| ||||||||||||||| |||||||||||     
T  40614 aaaaagtcatccaaaccaaaccaaaccaatgcggtttggattggttcgatatgtgcggtttatcgcgagataaaaaaatattacattgactctaatatta 40515  T
Q  186 ccaacttgttgcaaaataaacataagatattttattttgctgtttatatgataa 239  Q
    |||||||||| ||||||||||||||||  |||||||||| ||||||||| ||||    
T  40514 ccaacttgttacaaaataaacataagacgttttattttgttgtttatatcataa 40461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 25817 - 25929
Alignment:
Q  1 gcggtgcagtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaaagtcat 100  Q
    |||||||||||||||||| |||||||  ||||| |||||| |||||  |||||||||| ||||| ||||||||| |||||||||| ||||||||    ||    
T  25817 gcggtgcagtttggttcggttttaaggttaaaagtcatccgaaccgtaagataaaaaa-catgcagtttggtttggttcggttgacttttaaaataaaat 25915  T
Q  101 ccaaaccaaaccaa 114  Q
    ||||||||||||||    
T  25916 ccaaaccaaaccaa 25929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Original strand, 14504 - 14560
Alignment:
Q  29 taaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttga 85  Q
    ||||| |||||| |||||| ||||||||||||||||| |||||||| |||| |||||    
T  14504 taaaagtcatccgaaccgcaagataaaaaagcatgcgatttggtttggttcagttga 14560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 1120 - 1204
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||||||||| |||| ||  ||||| |||||| |||||| |||||||||| |||| |||||||| | |||||||||||| ||||||    
T  1120 gtttggttcggttttgaggctaaaagtcatccgaaccgcaagataaaaaa-catgtggtttggtgtggttcggttgattcttaaaa 1204  T

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Target: scaffold0688; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 7689 - 7773
Alignment:
Q  9 gtttggttcgattttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggttttgttcggttgatttttaaaa 94  Q
    |||||||||| |||| ||  ||||| |||||| |||||| |||||||||| |||| |||||||| | |||||||||||| ||||||    
T  7689 gtttggttcggttttgaggctaaaagtcatccgaaccgcaagataaaaaa-catgtggtttggtgtggttcggttgattcttaaaa 7773  T

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