View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16517_low_3 (Length: 643)
Name: NF16517_low_3
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16517_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 607; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 14 - 628
Target Start/End: Original strand, 45479404 - 45480018
Alignment:
| Q |
14 |
gatatgaaacttccggtaaatgaggatttcttgttgagaatatcaagtaaccttgattgctctagttgaatcttggccctatcagactcaggtagactac |
113 |
Q |
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| T |
45479404 |
gatatgaaacttccggtaaatgaggatttcttgttgagaatatcaagtaaccttgattgctctagttgaatcttggccctatcagactcaggtagactac |
45479503 |
T |
|
| Q |
114 |
taccaaatgtatatgaagaagaatctctaggacttggagtccctcttggtgactttcccttttcatctaacggttcttcattgatgataaaggtagacat |
213 |
Q |
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| T |
45479504 |
taccaaatgtatatgaagaagaatctctaggacttggagtccctcttggtgactttcccttttcatctaacggttcttcattgatgataaaggtagacat |
45479603 |
T |
|
| Q |
214 |
gtctatcccatttccatctccttcaatcaaccttgaatattctggatactttgctagaacatactgttcaacatattccatttcttttggtgtgattgga |
313 |
Q |
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| T |
45479604 |
gtctatcccatttccatctccttcaatcaaccttgaatattctggatactttgctagaacatactgttcaacatattccatttcttttggtgtgattgga |
45479703 |
T |
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| Q |
314 |
cctgaccatctaatatcgaattcgcggatagttgatatcgcttcagctatgatgtgagctggaatcattgcatgtcctttctgttttgatacaattcaca |
413 |
Q |
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| T |
45479704 |
cctgaccatctaatatcgaattcgcggatagttgatatcgcttcagctatgatgtgagctggaatcattgcatgtcctttctgttttgatacaattcaca |
45479803 |
T |
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| Q |
414 |
ccatttttcagcttcaattcaattggtacaataacacaatctcaaccaacaaacagagtaaaagttggaacatcatagttacctttaagaccatgctgtt |
513 |
Q |
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| T |
45479804 |
ccatttttcagcttcaattcaattggtacaataacacaatctcaaccaacaaacaaagtaaaagttggaacatcatagttacctttaagaccatgctgtt |
45479903 |
T |
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| Q |
514 |
tgatttgcaactttctgcaattattttatgtgttgcacctttcttaatgtccttgacttcattttctacaatctccggataagttacctaacaaagattt |
613 |
Q |
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| T |
45479904 |
tgatttgcaactttctgcaattattttatgtgttgcacctttcttaacgtccttgacttcattttctacaatctccggataagttacctaacaaagattt |
45480003 |
T |
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| Q |
614 |
aagtgtatgtaaact |
628 |
Q |
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| T |
45480004 |
aagtgtatgtaaact |
45480018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 191 - 380
Target Start/End: Original strand, 42655348 - 42655537
Alignment:
| Q |
191 |
tcattgatgataaaggtagacatgtctatcccatttccatctccttcaatcaaccttgaatattctggatactttgctagaacatactgttcaacatatt |
290 |
Q |
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|||||||||||||| | ||||||||||| ||| |||||||||||||||| | ||| |||||| |||||||||||||| ||||| | || ||||||| |
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| T |
42655348 |
tcattgatgataaaacttgacatgtctataccacttccatctccttcaattagatttgcatattcaggatactttgctaggacatattcctctacatatt |
42655447 |
T |
|
| Q |
291 |
ccatttcttttggtgtgattggacctgaccatctaatatcgaattcgcggatagttgatatcgcttcagctatgatgtgagctggaatca |
380 |
Q |
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| T |
42655448 |
ccatttctttctgtgtgattggacctgaccatcttaggtcaatgtcgcggatagttgatattgcttcagctatgatatgagcaggaatca |
42655537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 192 - 379
Target Start/End: Complemental strand, 43052632 - 43052445
Alignment:
| Q |
192 |
cattgatgataaaggtagacatgtctatcccatttccatctccttcaatcaaccttgaatattctggatactttgctagaacatactgttcaacatattc |
291 |
Q |
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||||||| ||||| | ||||| ||| | ||| ||||||| |||||||| | ||| ||||||||||||||||||||| ||||| |||| ||| |||| |
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| T |
43052632 |
cattgatcataaaactggacatatctgtaccacttccatcgccttcaatgagatttgcatattctggatactttgctaggacatattgttttacacattc |
43052533 |
T |
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| Q |
292 |
catttcttttggtgtgattggacctgaccatctaatatcgaattcgcggatagttgatatcgcttcagctatgatgtgagctggaatc |
379 |
Q |
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| T |
43052532 |
catttctttcggtgtaattggacctgaccatctaaggccaataccgcggattgttgatattgcttcagctatgatatgagcaggaatc |
43052445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 42655192 - 42655252
Alignment:
| Q |
17 |
atgaaacttccggtaaatgaggatttcttgttgagaatatcaagtaaccttgattgctcta |
77 |
Q |
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||||||||||| | ||| |||||||| ||||||||||||||||||| |||||| |||||| |
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| T |
42655192 |
atgaaacttccaggaaaggaggattttttgttgagaatatcaagtagtcttgatggctcta |
42655252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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