View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16517_low_30 (Length: 218)

Name: NF16517_low_30
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16517_low_30
NF16517_low_30
[»] chr8 (1 HSPs)
chr8 (33-218)||(29273593-29273778)
[»] chr1 (3 HSPs)
chr1 (36-218)||(268170-268352)
chr1 (54-190)||(28127510-28127646)
chr1 (54-190)||(28164194-28164330)
[»] chr4 (5 HSPs)
chr4 (36-218)||(18731317-18731499)
chr4 (36-217)||(18699213-18699394)
chr4 (36-218)||(18723898-18724080)
chr4 (36-218)||(18655290-18655472)
chr4 (36-218)||(18679380-18679562)
[»] chr6 (22 HSPs)
chr6 (54-218)||(26646658-26646822)
chr6 (54-218)||(26752626-26752790)
chr6 (59-214)||(25579902-25580057)
chr6 (59-214)||(26056109-26056264)
chr6 (59-214)||(26076079-26076234)
chr6 (61-218)||(26656168-26656325)
chr6 (61-218)||(26762139-26762296)
chr6 (61-218)||(27337916-27338073)
chr6 (61-218)||(27398656-27398813)
chr6 (59-214)||(26143048-26143203)
chr6 (37-133)||(28786542-28786638)
chr6 (54-133)||(28781403-28781482)
chr6 (54-133)||(28792663-28792742)
chr6 (59-214)||(25538723-25538878)
chr6 (59-187)||(25481952-25482080)
chr6 (54-207)||(26824030-26824183)
chr6 (164-214)||(26049028-26049078)
chr6 (164-214)||(26070197-26070247)
chr6 (54-103)||(26861907-26861956)
chr6 (180-218)||(26623155-26623193)
chr6 (180-218)||(26729133-26729171)
chr6 (67-160)||(26949898-26949991)
[»] scaffold0419 (1 HSPs)
scaffold0419 (37-139)||(7783-7885)
[»] scaffold0277 (2 HSPs)
scaffold0277 (37-139)||(4498-4600)
scaffold0277 (37-139)||(13459-13561)
[»] chr2 (1 HSPs)
chr2 (67-160)||(17993541-17993634)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 33 - 218
Target Start/End: Original strand, 29273593 - 29273778
Alignment:
Q  33 caggaattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgt 132  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  29273593 caggaattaagtaaagagcagtacccatgactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgatccatgt 29273692  T
Q  133 ttttcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatcc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29273693 ttttcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatcc 29273778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 268170 - 268352
Alignment:
Q  36 gaattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttt 135  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  268170 gaattaagtaaagagcagtacccacgactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgctccatgtttt 268269  T
Q  136 tcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatcc 218  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  268270 tcttgctattttggaaactctcttcgtgcttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatcc 268352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 54 - 190
Target Start/End: Original strand, 28127510 - 28127646
Alignment:
Q  54 tacccaggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttttcttgctattttggaaac 153  Q
    ||||| |||||| |||||||||| |||||||||| ||||||||| ||||| | ||||||||| | ||| || ||||||||||||||| |||||||||| |    
T  28127510 taccctggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacc 28127609  T
Q  154 tctcttcgtacttagtgagatgttcaccataactccc 190  Q
    ||||| | | |||||  || | |||||||||||||||    
T  28127610 tctctccatgcttagcaagctcttcaccataactccc 28127646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 54 - 190
Target Start/End: Original strand, 28164194 - 28164330
Alignment:
Q  54 tacccaggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttttcttgctattttggaaac 153  Q
    ||||| |||||| |||||||||| |||||||||| ||||||||| ||||| | ||||||||| | ||| || ||||||||||||||| |||||||||| |    
T  28164194 taccctggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaacc 28164293  T
Q  154 tctcttcgtacttagtgagatgttcaccataactccc 190  Q
    ||||  | | |||||| |||| ||  |||||||||||    
T  28164294 tctcaccatgcttagtaagatctttgccataactccc 28164330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 18731317 - 18731499
Alignment:
Q  36 gaattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttt 135  Q
    ||||||||||||||| | |||||| ||||| |||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||||| ||||||||||    
T  18731317 gaattaagtaaagaggagtacccatgactaaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttt 18731416  T
Q  136 tcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatcc 218  Q
    ||||| ||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18731417 tcttgttattttggaaactctttttgtgcttagtgagatgttcaccataactcccactttgatgtcgtatgtgactaggatcc 18731499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 18699213 - 18699394
Alignment:
Q  36 gaattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttt 135  Q
    ||||||||||||||| | ||||||| |||| |||||||||| |||||||||| ||||| ||||||||| ||||||||||||| |||||| ||||||||||    
T  18699213 gaattaagtaaagaggagtacccagaactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttt 18699312  T
Q  136 tcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatc 217  Q
    ||||| ||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18699313 tcttgttattttggaaactctttccgtgcttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatc 18699394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 18723898 - 18724080
Alignment:
Q  36 gaattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttt 135  Q
    ||||||||||||||| | |||||||||||| |||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||||| ||||||||||    
T  18723898 gaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttt 18723997  T
Q  136 tcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatcc 218  Q
    ||||| ||||||||||||||  || || ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  18723998 tcttgttattttggaaactcattttgtgcttagtgagatgttcaccataactcccactttggtgtcgtatgtgactaggatcc 18724080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 18655290 - 18655472
Alignment:
Q  36 gaattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttt 135  Q
    ||||||||| ||||| | ||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| |||||| ||||||||||    
T  18655290 gaattaagtgaagaggagtacccaggactagaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttt 18655389  T
Q  136 tcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatcc 218  Q
    ||||| ||||||||||| ||| |  || |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  18655390 tcttgttattttggaaattctttctgtgcttagtgagatgttcaccataacttccagtttgatgtcgtatgtgagtaggatcc 18655472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 36 - 218
Target Start/End: Original strand, 18679380 - 18679562
Alignment:
Q  36 gaattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttt 135  Q
    ||||||||||||||| | |||||||||||| |||||||||| |||||||||| ||||| ||||||||| ||||||||||||| |||||| ||||||||||    
T  18679380 gaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttt 18679479  T
Q  136 tcttgctattttggaaactctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatcc 218  Q
    | ||| ||||||||||||||| |  ||  ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  18679480 tattgttattttggaaactctttcagtgattagtgagatgttcaccataactaccactttgatgtcatatgtgagtaggatcc 18679562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 54 - 218
Target Start/End: Complemental strand, 26646822 - 26646658
Alignment:
Q  54 tacccaggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttttcttgctattttggaaac 153  Q
    |||||||||||| ||||||| || |||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||||||||||    
T  26646822 tacccaggactataatggtatccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgttccttgtttttcttgttattttggaaac 26646723  T
Q  154 tctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatcc 218  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  26646722 tctcttcgtgcttagtgagatgttcaccataactcccactttgatgccgtatctgagtaggatcc 26646658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 54 - 218
Target Start/End: Complemental strand, 26752790 - 26752626
Alignment:
Q  54 tacccaggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttttcttgctattttggaaac 153  Q
    |||||||||||| ||||||| || |||||||||| ||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||||||||||||    
T  26752790 tacccaggactataatggtatccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgttccttgtttttcttgttattttggaaac 26752691  T
Q  154 tctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatcc 218  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  26752690 tctcttcgtgcttagtgagatgttcaccataactcccactttgatgccgtatctgagtaggatcc 26752626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 59 - 214
Target Start/End: Complemental strand, 25580057 - 25579902
Alignment:
Q  59 aggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttttcttgctattttggaaactctct 158  Q
    ||||||| |||| ||||| |||||||||| ||||||||| ||||| | ||||||||||  ||| || ||||||||||||| | ||||||| || ||||||    
T  25580057 aggactataatgatagccggacaagttagcagcttgggtaagagctatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctct 25579958  T
Q  159 tcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtagg 214  Q
    || | |||||| ||||  ||||||||||||||||| ||||||||||||||||||||    
T  25579957 tcatgcttagtaagatactcaccataactcccactctgatgtcgtatgtgagtagg 25579902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 59 - 214
Target Start/End: Complemental strand, 26056264 - 26056109
Alignment:
Q  59 aggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttttcttgctattttggaaactctct 158  Q
    ||||||| |||| ||||| |||||||||| |||||| || ||||||| ||||||||||  ||| || ||||||||||||| | |||||||||| | ||||    
T  26056264 aggactataatgatagccggacaagttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacccctct 26056165  T
Q  159 tcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtagg 214  Q
    |  | |||||| ||||| ||||||||||||||||| ||||||||||||||||||||    
T  26056164 ttatgcttagtaagatgctcaccataactcccactctgatgtcgtatgtgagtagg 26056109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 59 - 214
Target Start/End: Complemental strand, 26076234 - 26076079
Alignment:
Q  59 aggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttttcttgctattttggaaactctct 158  Q
    ||||||| |||| ||||| |||||||||| |||||| || ||||||| ||||||||||  ||| || ||||||||||||| | |||||||||| | ||||    
T  26076234 aggactataatgatagccggacaagttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacccctct 26076135  T
Q  159 tcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtagg 214  Q
    |  | |||||| ||||| ||||||||||||||||| ||||||||||||||||||||    
T  26076134 ttatgcttagtaagatgctcaccataactcccactctgatgtcgtatgtgagtagg 26076079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 61 - 218
Target Start/End: Complemental strand, 26656325 - 26656168
Alignment:
Q  61 gactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttttcttgctattttggaaactctcttc 160  Q
    ||||| ||||||||||||||||||| | ||||| ||||||||||| ||||||||| | |||||  | |||||||| |||| ||||||||||  ||| |||    
T  26656325 gactacaatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttc 26656226  T
Q  161 gtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatcc 218  Q
     | |||||| ||||| ||||| ||||| ||| | ||||||||||||||||||||||||    
T  26656225 atgcttagtaagatgctcaccgtaacttccagtctgatgtcgtatgtgagtaggatcc 26656168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 61 - 218
Target Start/End: Complemental strand, 26762296 - 26762139
Alignment:
Q  61 gactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttttcttgctattttggaaactctcttc 160  Q
    ||||| ||||||||||||||||||| | ||||| ||||||||||| ||||||||| | |||||  | |||||||| |||| ||||||||||  ||| |||    
T  26762296 gactacaatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgttttccttgttattttggaacttcttttc 26762197  T
Q  161 gtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatcc 218  Q
     | |||||| ||||| ||||| ||||| ||| | ||||||||||||||||||||||||    
T  26762196 atgcttagtaagatgctcaccgtaacttccagtctgatgtcgtatgtgagtaggatcc 26762139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 61 - 218
Target Start/End: Original strand, 27337916 - 27338073
Alignment:
Q  61 gactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttttcttgctattttggaaactctcttc 160  Q
    ||||| |||||| ||| || ||||||| ||||||||| ||||||| ||||||||  |||||||  |||||||||| |||| ||||||||||  | |||||    
T  27337916 gactaaaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttc 27338015  T
Q  161 gtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatcc 218  Q
     | |||||| ||||| ||||||||||||||| | |||||||||| |||||||||||||    
T  27338016 atgcttagtaagatgctcaccataactcccagtctgatgtcgtacgtgagtaggatcc 27338073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 61 - 218
Target Start/End: Original strand, 27398656 - 27398813
Alignment:
Q  61 gactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttttcttgctattttggaaactctcttc 160  Q
    ||||| |||||| ||| || ||||||| ||||||||| ||||||| ||||||||  |||||||  |||||||||| |||| ||||||||||  | |||||    
T  27398656 gactaaaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgttttccttgttattttggaacttatcttc 27398755  T
Q  161 gtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtaggatcc 218  Q
     | |||||| ||||| ||||||||||||||| | |||||||||| |||||||||||||    
T  27398756 atgcttagtaagatgctcaccataactcccagtctgatgtcgtacgtgagtaggatcc 27398813  T

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Target: chr6; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 59 - 214
Target Start/End: Complemental strand, 26143203 - 26143048
Alignment:
Q  59 aggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttttcttgctattttggaaactctct 158  Q
    ||||||| |||| ||||| |||||||||| ||||||| | ||||| | ||||||||||  ||| || ||||||||||||| | ||||||| || ||||||    
T  26143203 aggactataatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtttttctcgttattttgaaacctctct 26143104  T
Q  159 tcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtagg 214  Q
    || | |||||| ||||| ||||||||| ||||||| |||| |||||||||||||||    
T  26143103 tcatgcttagtaagatgctcaccataaatcccactctgatttcgtatgtgagtagg 26143048  T

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Target: chr6; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 28786638 - 28786542
Alignment:
Q  37 aattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtt 133  Q
    ||||||||||| ||   ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||  ||||||||    
T  28786638 aattaagtaaatagtcgtacccaggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgtt 28786542  T

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Target: chr6; HSP #12
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 28781482 - 28781403
Alignment:
Q  54 tacccaggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtt 133  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||  ||||||||    
T  28781482 tacccaggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgtt 28781403  T

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Target: chr6; HSP #13
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 28792742 - 28792663
Alignment:
Q  54 tacccaggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtt 133  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||  ||||||||    
T  28792742 tacccaggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgtt 28792663  T

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Target: chr6; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 59 - 214
Target Start/End: Complemental strand, 25538878 - 25538723
Alignment:
Q  59 aggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttttcttgctattttggaaactctct 158  Q
    ||||||| |||| ||||| |||||||||| ||||||| | ||||| | ||||||||||  ||| || |||||||||||||   ||||||| || ||||||    
T  25538878 aggactataatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtttttctcattattttgaaacctctct 25538779  T
Q  159 tcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtagg 214  Q
    || | |||||| | ||| ||||||||||||||||| ||||||||||  ||||||||    
T  25538778 tcatgcttagtaaaatgctcaccataactcccactctgatgtcgtaactgagtagg 25538723  T

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Target: chr6; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 59 - 187
Target Start/End: Complemental strand, 25482080 - 25481952
Alignment:
Q  59 aggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttttcttgctattttggaaactctct 158  Q
    ||||||| |||| ||||| ||||| |||| |||||| || ||||||| ||||||||||  ||| || ||||||||||||| | |||||||||| | ||||    
T  25482080 aggactataatgatagccggacaaattagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtttttctcgttattttggaacccctct 25481981  T
Q  159 tcgtacttagtgagatgttcaccataact 187  Q
    || | |||||| |||| ||||||||||||    
T  25481980 tcatgcttagtcagatattcaccataact 25481952  T

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Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 207
Target Start/End: Complemental strand, 26824183 - 26824030
Alignment:
Q  54 tacccaggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttttcttgctattttggaaac 153  Q
    |||||| ||||| ||||  |||||||||||| || ||||||  ||||||||  ||||||||||  |||    |||||||||| |||| |||||  ||| |    
T  26824183 tacccaagactaaaatgaaagccagacaagtcagcagcttgtttcagagccttcttccattgaagcaatttctccatgttttccttgttatttccgaacc 26824084  T
Q  154 tctcttcgtacttagtgagatgttcaccataactcccactttgatgtcgtatgt 207  Q
    ||| ||| | |||||||||||||  | ||||||||||||  |||||||||||||    
T  26824083 tcttttcatgcttagtgagatgtatagcataactcccacgctgatgtcgtatgt 26824030  T

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Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 26049078 - 26049028
Alignment:
Q  164 cttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtagg 214  Q
    |||||| ||||| ||||||||||| ||||| ||||||||||||||||||||    
T  26049078 cttagtaagatgctcaccataacttccactatgatgtcgtatgtgagtagg 26049028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 26070247 - 26070197
Alignment:
Q  164 cttagtgagatgttcaccataactcccactttgatgtcgtatgtgagtagg 214  Q
    |||||| ||||| ||||||||||| ||||| ||||||||||||||||||||    
T  26070247 cttagtaagatgctcaccataacttccactatgatgtcgtatgtgagtagg 26070197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 26861956 - 26861907
Alignment:
Q  54 tacccaggactagaatggtagccagacaagttagaagcttgggtcagagc 103  Q
    |||||||||||| |||||||||| |||||||||| ||||||| |||||||    
T  26861956 tacccaggactaaaatggtagcctgacaagttagcagcttggttcagagc 26861907  T

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Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 26623193 - 26623155
Alignment:
Q  180 ccataactcccactttgatgtcgtatgtgagtaggatcc 218  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  26623193 ccataactcccagtttgatgccgtatgtgagtaggatcc 26623155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 26729171 - 26729133
Alignment:
Q  180 ccataactcccactttgatgtcgtatgtgagtaggatcc 218  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  26729171 ccataactcccagtttgatgccgtatgtgagtaggatcc 26729133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 26949991 - 26949898
Alignment:
Q  67 aatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttttcttgctattttggaaactctcttc 160  Q
    ||||||||||||| |||| || | ||| | ||||||| | ||||||||    |||||| ||||||||||| ||||| |||||||| ||||||||    
T  26949991 aatggtagccagataagtcagcaactttgttcagagctatcttccatttcagcaaccgctccatgttttttttgctcttttggaacctctcttc 26949898  T

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Target: scaffold0419 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 7885 - 7783
Alignment:
Q  37 aattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgttttt 136  Q
    ||||||||||| ||   |||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| || |||||||| ||    
T  7885 aattaagtaaatagtcgtacccatgactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttatt 7786  T
Q  137 ctt 139  Q
    |||    
T  7785 ctt 7783  T

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Target: scaffold0277 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 4498 - 4600
Alignment:
Q  37 aattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgttttt 136  Q
    ||||||||||| ||   |||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||  |||||||| ||    
T  4498 aattaagtaaataggcgtacccatgactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatt 4597  T
Q  137 ctt 139  Q
    |||    
T  4598 ctt 4600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 13459 - 13561
Alignment:
Q  37 aattaagtaaagagcactacccaggactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgttttt 136  Q
    ||||||||||| ||   |||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| || |||||||| ||    
T  13459 aattaagtaaatagtcgtacccatgactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgttatt 13558  T
Q  137 ctt 139  Q
    |||    
T  13559 ctt 13561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 17993541 - 17993634
Alignment:
Q  67 aatggtagccagacaagttagaagcttgggtcagagccaacttccattgattcaaccgttccatgtttttcttgctattttggaaactctcttc 160  Q
    |||||| |||||| ||||||| ||||||| | |||||   ||||||||    |||||| |||||||||| |||||||||||| |||| ||||||    
T  17993541 aatggtggccagataagttagcagcttggttaagagctttcttccatttcaacaaccgctccatgttttccttgctattttgaaaaccctcttc 17993634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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