View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16517_low_31 (Length: 218)
Name: NF16517_low_31
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16517_low_31 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 26764004 - 26763787
Alignment:
| Q |
1 |
attttcaatcacaccattttatcaagattttgcctgcgataatttttgtttacaagnnnnnnncttcctgaaacaagaagttttaaatttttataagaaa |
100 |
Q |
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| T |
26764004 |
attttcaatcacaccattttatcaagattttgcctgcgataatttttgtttacaagtttttttcttcctgaaacaagaagttttaaatttttataagaaa |
26763905 |
T |
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| Q |
101 |
cacaattatcatttatagcagggcttttgaactaagaattgaaagatagaaataaaagcattgctcactctaatttatttcttttacagtaaaatgaatt |
200 |
Q |
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| T |
26763904 |
cacaattatcatttatagcagggcttttgaactaagaattgaaagatagaaataaaagcattgctcactctaatttatttcttttacagtaaaatgaatt |
26763805 |
T |
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| Q |
201 |
aaagaacccatttgcatt |
218 |
Q |
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|||||||||||||||||| |
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| T |
26763804 |
aaagaacccatttgcatt |
26763787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 32138456 - 32138303
Alignment:
| Q |
64 |
cttcctgaaacaagaagttttaaatttttataagaaacacaattatcatttatagcagggcttttgaactaagaattgaaagatagaaataaaagcattg |
163 |
Q |
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|||| ||||||| ||||||||| |||||| ||| ||||||||| | ||||| | | ||| | |||||| ||||||||||| ||||||| |||||||||| |
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| T |
32138456 |
cttcatgaaacagaaagttttaattttttacaaggaacacaattcttatttacaacggggatgttgaacaaagaattgaaacatagaaacaaaagcattg |
32138357 |
T |
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| Q |
164 |
ctcactctaatttatttcttttacagtaaaatgaattaaagaacccatttgcat |
217 |
Q |
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| T |
32138356 |
ctcactctaatttatttcttttacagtaaaatgaattaaagaacccatttgcat |
32138303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 19763854 - 19764007
Alignment:
| Q |
64 |
cttcctgaaacaagaagttttaaatttttataagaaacacaattatcatttatagcagggcttttgaactaagaattgaaagatagaaataaaagcattg |
163 |
Q |
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|||| ||||||| ||||||||||||||||| ||| ||||||||| | ||||| ||| ||| | |||||| ||||||||||| ||||||| |||||||||| |
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| T |
19763854 |
cttcatgaaacaggaagttttaaatttttacaaggaacacaattcttatttacagcggggatgttgaacaaagaattgaaacatagaaacaaaagcattg |
19763953 |
T |
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| Q |
164 |
ctcactctaatttatttcttttacagtaaaatgaattaaagaacccatttgcat |
217 |
Q |
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| T |
19763954 |
ctcactctaatttatttattttacagtaaaatgaattaaagaacccatttgcat |
19764007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 20795940 - 20796093
Alignment:
| Q |
64 |
cttcctgaaacaagaagttttaaatttttataagaaacacaattatcatttatagcagggcttttgaactaagaattgaaagatagaaataaaagcattg |
163 |
Q |
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|||| ||||||| |||||||||||||||| ||| ||||||||| | ||||| | ||| | |||||| ||||||||||| ||||||| |||||||||| |
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| T |
20795940 |
cttcatgaaacagaaagttttaaatttttacaaggaacacaattcttatttacaatggggatgttgaacaaagaattgaaacatagaaacaaaagcattg |
20796039 |
T |
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| Q |
164 |
ctcactctaatttatttcttttacagtaaaatgaattaaagaacccatttgcat |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20796040 |
ctcaatctaatttatttcttttacagtaaaatgaattaaagaacccatttgcat |
20796093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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