View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16517_low_4 (Length: 586)
Name: NF16517_low_4
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16517_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 545; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 15 - 571
Target Start/End: Original strand, 5961827 - 5962383
Alignment:
| Q |
15 |
ttattcttaagtctagcactgaaaatttgtatgtctggacttttactgttatgaccagtttctgttttagttgattactcacccatttatctgtttagac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5961827 |
ttattcttaagtctagcactgaaaatttgtatgtctggacttttactgttatgaccagtttctgttttagttgattactcacccatttatctgtttagac |
5961926 |
T |
|
| Q |
115 |
gagaacttaaggttgcatgattcagtttggttttgtttgtattgtaggtgatgtgatttctggaacaacttcaggtggaattcaccatcctggtatcctt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5961927 |
gagaacttaaggttgcatgattcagtttggttttgtttgtattgtaggtgatgtgatttctggaacgacttcaggtggaattcaccatcctggtatcctt |
5962026 |
T |
|
| Q |
215 |
gaaggatggtttggtgtccattggtggactgggcgcacatttgttgttgtttttacaacacttgctgtgtttggacctttggtcagcttaaagcgaattg |
314 |
Q |
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| T |
5962027 |
gaaggatggtttggtgtccattggtggactgggcgcacatttgttgttgtttttacaacacttgctgtgtttggacctttggtcagcttaaagcgaattg |
5962126 |
T |
|
| Q |
315 |
gtgagtgtgtgtacttttcttgcattatttgatgtgaaaaatagaaatatattgttgtgtcacttagattagatgacaatgtaaggaagatgactcaaac |
414 |
Q |
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| T |
5962127 |
gtgagtgtgtatacttttcttgcattatttgatgtgaaaaatagaaatatattgttgtgtcacttagattagatgacaatgtaaggaagatgactcaaac |
5962226 |
T |
|
| Q |
415 |
actggatggtatggatgaaagtttccatttctttttaatggtcacaagatcaataaacaatttgttgattccatctgtcccaaactgtgtgaagaaaaat |
514 |
Q |
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| T |
5962227 |
actggatggtatggatgaaagtttccatttctttttaatggtcacaagatcaataaacaatttgttgattccatctgtcccaaactgtgtgaagaaaact |
5962326 |
T |
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| Q |
515 |
agagatgcaatatggaagagatttcattctgttccatcctattttttatgaccaaac |
571 |
Q |
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| T |
5962327 |
agagatgcaatatggaagagatttcattctgttccatcctattttttatgaccaaac |
5962383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 111 - 360
Target Start/End: Original strand, 5933346 - 5933596
Alignment:
| Q |
111 |
agacgagaacttaaggttgcatgattcagtttggttttgtttgtattgtaggtgatgtgatttctggaacaacttcaggtggaattcaccatcctggtat |
210 |
Q |
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|||| |||||||||||||| || |||| ||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| |
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| T |
5933346 |
agacaagaacttaaggttgtataattctattttgttttgttcgtattgtaggtgatgtggtttctggaacaacttcaagtggaattcaccattctggtat |
5933445 |
T |
|
| Q |
211 |
ccttgaaggatggtttggtgtccattggtggactgggcgcacatttgttgttgtttttacaacacttgctgtgtttggacctttggtcagcttaaagcga |
310 |
Q |
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||| |||||||||||||| |||||||||||||||||||| ||||||||| || |||||||||||||||||||||| |||| |||||||||| |||| | |
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| T |
5933446 |
cctcgaaggatggtttggagtccattggtggactgggcgtacatttgttcttacctttacaacacttgctgtgtttgcacctctggtcagctttaagcaa |
5933545 |
T |
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| Q |
311 |
attggtgagtgtgtgtac-ttttcttgcattatttgatgtgaaaaatagaa |
360 |
Q |
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||||||||||| ||| | |||||||| |||| |||||||||||||||||| |
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| T |
5933546 |
attggtgagtgattgtgctttttcttgtattagttgatgtgaaaaatagaa |
5933596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 132 - 321
Target Start/End: Original strand, 5983308 - 5983498
Alignment:
| Q |
132 |
tgattcagtttggttttgtttgtatt-gtaggtgatgtgatttctggaacaacttcaggtggaattcaccatcctggtatccttgaaggatggtttggtg |
230 |
Q |
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||||||||||| |||||||| ||||| ||||| ||||| ||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5983308 |
tgattcagtttcgttttgttcgtatttgtaggcgatgtcatttcaggaacaacttcaagtggaattcaccatcctggtatacttgaaggatggtttggtg |
5983407 |
T |
|
| Q |
231 |
tccattggtggactgggcgcacatttgttgttgtttttacaacacttgctgtgtttggacctttggtcagcttaaagcgaattggtgagtg |
321 |
Q |
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| T |
5983408 |
tccattggtggaccgggcgtacatttgttcttgtttttgcaacacttgctgtgtttgcacctttggtcagctttaagcggattggttagtg |
5983498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 116 - 321
Target Start/End: Original strand, 5967373 - 5967579
Alignment:
| Q |
116 |
agaacttaaggttgcatgattcagtttggtttt-gtttgtattgtaggtgatgtgatttctggaacaacttcaggtggaattcaccatcctggtatcctt |
214 |
Q |
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|||| ||||||||| || ||||| ||| ||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |
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| T |
5967373 |
agaatttaaggttgtataattcaattttgtttttgttcatattgtaggtgatgtgatttctggaacaacttcaagtggaattcaccatgctggtgtcctt |
5967472 |
T |
|
| Q |
215 |
gaaggatggtttggtgtccattggtggactgggcgcacatttgttgttgtttttacaacacttgctgtgtttggacctttggtcagcttaaagcgaattg |
314 |
Q |
| |
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||||||||||||||||||||||||||||| ||||| ||||||||| || || ||||| ||| |||| ||| ||||||||||||||| ||||| |||| |
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| T |
5967473 |
gaaggatggtttggtgtccattggtggaccgggcgtacatttgttattaccttcgcaacatttgttgtggttgcacctttggtcagctttaagcggattg |
5967572 |
T |
|
| Q |
315 |
gtgagtg |
321 |
Q |
| |
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||||||| |
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| T |
5967573 |
gtgagtg |
5967579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 144 - 287
Target Start/End: Original strand, 11044058 - 11044202
Alignment:
| Q |
144 |
gttttgtttgtattgtaggtgatgtgatttctggaacaacttcaggtggaattcaccatcctggtatccttgaaggatggtttggtgtccattggtggac |
243 |
Q |
| |
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||||| |||||||| |||||||||||||| || |||||||| || | ||||||||||| ||| |||| ||||||| | || |||||| ||||| ||||| |
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| T |
11044058 |
gttttatttgtattataggtgatgtgattactagaacaactgcaaatagaattcaccattctgatatctttgaagggttgtctggtgttcattgttggac |
11044157 |
T |
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| Q |
244 |
tgggcgcacatttgttgttgtttt-tacaacacttgctgtgtttg |
287 |
Q |
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||||| ||||||||| ||||||| || ||||| || |||||||| |
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| T |
11044158 |
tgggcatacatttgttcttgttttctaaaacacgtgttgtgtttg |
11044202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 55925153 - 55925067
Alignment:
| Q |
154 |
tattgtaggtgatgtgatttctggaacaacttcaggtggaattcaccatcctggtatccttgaaggatggtttggtgtccattggtggactgg |
246 |
Q |
| |
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|||| |||||||||||| |||| |||||| ||| |||||||||||| |||||||||||||||||||||||| | |||||||||||||| |
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| T |
55925153 |
tattataggtgatgtgacttctt-aacaacatcaagtggaattcacc-----ggtatccttgaaggatggtttggtattcattggtggactgg |
55925067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 160 - 262
Target Start/End: Complemental strand, 5629925 - 5629823
Alignment:
| Q |
160 |
aggtgatgtgatttctggaacaacttcaggtggaattcaccatcctggtatccttgaaggatggtttggtgtccattggtggactgggcgcacatttgtt |
259 |
Q |
| |
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|||||||||| |||||||||| ||||| ||||| || || |||||| |||||||||||||||||||| || |||||||||||| | ||||||||| |
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| T |
5629925 |
aggtgatgtgctttctggaacttcttcaagtggagaacatcactatggtattcttgaaggatggtttggtgtgcactggtggactgggaggacatttgtt |
5629826 |
T |
|
| Q |
260 |
gtt |
262 |
Q |
| |
|
||| |
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|
| T |
5629825 |
gtt |
5629823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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