View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16517_low_5 (Length: 542)
Name: NF16517_low_5
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16517_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 14 - 523
Target Start/End: Complemental strand, 46053809 - 46053300
Alignment:
| Q |
14 |
catcacgctcaatctgcaagaggggtcaataaaactaaatgagctcaaactgaaacagggtaccccacaagcgaatgaataaactggaaagtatgtactt |
113 |
Q |
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| T |
46053809 |
catcacgctcaatctgcaagaggggtcaataaaactaaatgagctcaaactgaaacagggcaccccacaagcgaatgaataaactggaaagtatgtactt |
46053710 |
T |
|
| Q |
114 |
ctttcacaagaagtcaacaacgatgatgttaggattgaactccactaaagtacacaattaattctattaggtaaaataaacaatttcaactgttaatttc |
213 |
Q |
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| T |
46053709 |
ctttcacaagaagtcaacaaagatgatgttaggattgaactccactaaagtacacaattaattcaattaggtaaaataaacaatttgaactgttaatttc |
46053610 |
T |
|
| Q |
214 |
aacgatctatgatgtgtttgaacattaaagcttgagaatatttaaccgaaaattaaatagctcatgttagacacaccaaattcatactttccattaacac |
313 |
Q |
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| T |
46053609 |
aacgatctatgatgtgtttgaacatcaaagcttgagaatatttaaccgaaaattaaatagctcatgttagacacaccaaattcatactttccattaacac |
46053510 |
T |
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| Q |
314 |
aattcaaactttgcaagagaatcataaattaaattttaaagcaaacctcttcaacataagcaagcagaaggtgctgtaataaaacaggctgcgcacgctg |
413 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46053509 |
aactcaaactttgcaagagaatcataaattaaattttaaagcaaacctcttcaacataagcaagcagaaggtgctgtaataaaacaggttgcgcacgctg |
46053410 |
T |
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| Q |
414 |
caaatgagtataaccgggaacaataagaccctgattgttcaaagccagcttaagaagcgaaacttgaagttgttttatgcttgctaagatcttatcaata |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46053409 |
caaatgagtataaccgggaacaataagaccctgattgttcaaagccagcttaagaagcgaaacttgaagttgttttatacttgctaagatcttatcaata |
46053310 |
T |
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| Q |
514 |
gcatcgcgac |
523 |
Q |
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| T |
46053309 |
gcatcacgac |
46053300 |
T |
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