View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16517_low_6 (Length: 487)

Name: NF16517_low_6
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16517_low_6
NF16517_low_6
[»] chr3 (27 HSPs)
chr3 (283-471)||(42720795-42720983)
chr3 (1-170)||(52325067-52325237)
chr3 (1-62)||(54493907-54493968)
chr3 (1-62)||(44234089-44234150)
chr3 (1-61)||(26832071-26832131)
chr3 (8-64)||(37041927-37041983)
chr3 (1-62)||(32827351-32827412)
chr3 (1-62)||(41031571-41031632)
chr3 (1-62)||(45392089-45392150)
chr3 (1-64)||(27668374-27668437)
chr3 (1-62)||(26134750-26134811)
chr3 (1-62)||(43639563-43639624)
chr3 (1-64)||(39329797-39329860)
chr3 (1-55)||(14756161-14756215)
chr3 (1-43)||(48744277-48744319)
chr3 (74-112)||(54458433-54458471)
chr3 (1-62)||(5245411-5245472)
chr3 (1-62)||(9218144-9218205)
chr3 (1-62)||(15082002-15082062)
chr3 (1-62)||(32023148-32023209)
chr3 (1-62)||(33994656-33994717)
chr3 (5-62)||(39365068-39365125)
chr3 (1-62)||(39866600-39866661)
chr3 (226-259)||(52324987-52325020)
chr3 (1-62)||(54122271-54122332)
chr3 (1-62)||(54845563-54845624)
chr3 (1-65)||(47496165-47496229)
[»] chr2 (18 HSPs)
chr2 (1-64)||(4794570-4794633)
chr2 (1-62)||(23684958-23685019)
chr2 (1-62)||(28301433-28301494)
chr2 (1-62)||(41436078-41436139)
chr2 (1-62)||(43077773-43077834)
chr2 (1-64)||(44424310-44424373)
chr2 (1-62)||(7650022-7650083)
chr2 (1-62)||(24775855-24775916)
chr2 (1-60)||(435125-435184)
chr2 (1-64)||(19515878-19515941)
chr2 (8-62)||(28108429-28108483)
chr2 (1-62)||(37247931-37247992)
chr2 (5-64)||(6075495-6075554)
chr2 (1-64)||(16864981-16865044)
chr2 (1-59)||(3100402-3100460)
chr2 (8-62)||(44284373-44284427)
chr2 (1-62)||(8031740-8031801)
chr2 (1-62)||(30757615-30757676)
[»] scaffold0058 (1 HSPs)
scaffold0058 (1-62)||(14455-14516)
[»] chr4 (33 HSPs)
chr4 (1-62)||(38976990-38977051)
chr4 (1-64)||(17237040-17237103)
chr4 (1-64)||(49448838-49448901)
chr4 (1-61)||(4360455-4360515)
chr4 (1-64)||(22872435-22872498)
chr4 (1-64)||(47846896-47846959)
chr4 (1-62)||(1825295-1825356)
chr4 (1-62)||(37309697-37309758)
chr4 (1-62)||(39979779-39979840)
chr4 (1-62)||(41203736-41203797)
chr4 (1-62)||(42024248-42024309)
chr4 (1-62)||(42185843-42185904)
chr4 (1-62)||(47787894-47787955)
chr4 (1-62)||(51527418-51527478)
chr4 (1-64)||(22020557-22020620)
chr4 (1-64)||(38160199-38160262)
chr4 (1-64)||(38319908-38319971)
chr4 (1-64)||(41436478-41436541)
chr4 (1-64)||(51572275-51572338)
chr4 (1-63)||(27977145-27977207)
chr4 (74-120)||(34791075-34791121)
chr4 (1-62)||(3686010-3686071)
chr4 (1-62)||(12619687-12619748)
chr4 (1-62)||(18849806-18849867)
chr4 (1-62)||(26799263-26799324)
chr4 (1-62)||(35998164-35998225)
chr4 (3-64)||(40293684-40293745)
chr4 (1-62)||(41710191-41710252)
chr4 (1-62)||(48740519-48740580)
chr4 (1-62)||(49306586-49306647)
chr4 (1-62)||(54729531-54729591)
chr4 (2-62)||(39976438-39976498)
chr4 (1-65)||(47277729-47277793)
[»] chr1 (23 HSPs)
chr1 (1-62)||(28277086-28277147)
chr1 (8-62)||(26755975-26756029)
chr1 (3-62)||(37525051-37525109)
chr1 (1-63)||(17342826-17342888)
chr1 (1-62)||(8327716-8327777)
chr1 (1-62)||(19532967-19533028)
chr1 (1-62)||(32587764-32587825)
chr1 (1-62)||(36467243-36467304)
chr1 (1-62)||(45889296-45889357)
chr1 (1-61)||(46536340-46536400)
chr1 (1-64)||(29225750-29225813)
chr1 (1-64)||(35622827-35622890)
chr1 (4-62)||(8773241-8773299)
chr1 (1-62)||(3555603-3555664)
chr1 (1-62)||(7785322-7785383)
chr1 (13-62)||(27698811-27698860)
chr1 (1-62)||(28839338-28839399)
chr1 (15-64)||(36232851-36232900)
chr1 (1-62)||(50267486-50267547)
chr1 (1-62)||(51749231-51749292)
chr1 (1-61)||(948635-948695)
chr1 (1-61)||(2571363-2571423)
chr1 (1-61)||(34813917-34813977)
[»] chr7 (18 HSPs)
chr7 (1-64)||(25778741-25778804)
chr7 (1-62)||(5724754-5724815)
chr7 (1-62)||(23703915-23703976)
chr7 (1-62)||(29434627-29434688)
chr7 (1-62)||(31581490-31581551)
chr7 (1-62)||(34963858-34963919)
chr7 (3-62)||(46288480-46288539)
chr7 (1-58)||(1643385-1643442)
chr7 (1-62)||(2846723-2846784)
chr7 (1-62)||(30463015-30463076)
chr7 (1-62)||(37157169-37157230)
chr7 (1-62)||(48981655-48981716)
chr7 (1-62)||(2842099-2842160)
chr7 (1-62)||(29257546-29257607)
chr7 (1-62)||(36117660-36117721)
chr7 (1-62)||(47454003-47454064)
chr7 (1-61)||(25940796-25940856)
chr7 (6-62)||(44604529-44604585)
[»] scaffold0221 (1 HSPs)
scaffold0221 (1-62)||(8886-8947)
[»] chr5 (23 HSPs)
chr5 (1-62)||(858334-858395)
chr5 (1-62)||(17243002-17243063)
chr5 (1-64)||(39183675-39183738)
chr5 (1-62)||(8369744-8369805)
chr5 (1-62)||(20189891-20189952)
chr5 (1-62)||(35334574-35334635)
chr5 (1-62)||(42211332-42211393)
chr5 (1-61)||(6735405-6735465)
chr5 (74-121)||(13422475-13422522)
chr5 (1-64)||(16283635-16283698)
chr5 (1-64)||(36469142-36469205)
chr5 (7-62)||(39035909-39035964)
chr5 (1-64)||(42479539-42479602)
chr5 (1-64)||(33498542-33498607)
chr5 (1-55)||(36446735-36446789)
chr5 (8-62)||(41184116-41184170)
chr5 (1-62)||(7179528-7179589)
chr5 (1-62)||(7613706-7613767)
chr5 (1-62)||(8692866-8692927)
chr5 (1-62)||(11099525-11099586)
chr5 (15-64)||(15254762-15254811)
chr5 (1-62)||(25814363-25814424)
chr5 (1-64)||(6629440-6629504)
[»] chr6 (10 HSPs)
chr6 (1-64)||(28538993-28539056)
chr6 (3-62)||(33109372-33109431)
chr6 (15-61)||(6787295-6787341)
chr6 (2-64)||(8569787-8569849)
chr6 (74-120)||(20383777-20383823)
chr6 (1-63)||(26356267-26356329)
chr6 (1-62)||(7301127-7301188)
chr6 (1-64)||(15321272-15321335)
chr6 (8-62)||(15081422-15081476)
chr6 (1-62)||(30063996-30064057)
[»] chr8 (21 HSPs)
chr8 (8-62)||(32967331-32967385)
chr8 (1-62)||(22325002-22325063)
chr8 (1-62)||(33925131-33925192)
chr8 (1-62)||(38252485-38252546)
chr8 (1-62)||(45425484-45425545)
chr8 (12-64)||(3442480-3442532)
chr8 (1-64)||(2195465-2195528)
chr8 (1-64)||(14748753-14748816)
chr8 (1-64)||(27868372-27868435)
chr8 (1-64)||(27987655-27987718)
chr8 (1-64)||(28044957-28045020)
chr8 (1-64)||(42412430-42412493)
chr8 (1-62)||(4274346-4274407)
chr8 (1-62)||(5392048-5392109)
chr8 (1-62)||(22490390-22490451)
chr8 (1-62)||(28802766-28802827)
chr8 (15-64)||(33826228-33826277)
chr8 (1-62)||(39171542-39171603)
chr8 (1-58)||(42558628-42558685)
chr8 (1-62)||(44790469-44790530)
chr8 (2-62)||(9014599-9014659)
[»] scaffold0045 (1 HSPs)
scaffold0045 (1-62)||(26321-26382)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-62)||(26612-26673)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-62)||(394777-394838)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 283 - 471
Target Start/End: Complemental strand, 42720983 - 42720795
Alignment:
Q  283 tgagctactccaacggtaatgtaattgcttggatacccttcaaaatcgagagcacataaacgacaaatgtctcattaaactgagccacatgtggaaggta 382  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42720983 tgagctactccaacggtaatgtaattgcttggatgcccttcaaaatcgagagcacataaacgacaaatgtctcattaaactgagtcacatgtggaaggta 42720884  T
Q  383 atatctactatattaatgaagnnnnnnngagttttaatattattgcatttttcgagttaggtttaaagtcaaaatcacttgttaaattt 471  Q
    |||||||||||||||||||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42720883 atatctactatattaatgaagaaaaaaagagttttaatattattgcatttttcgggttaggtttaaagtcaaaatcacttgttaaattt 42720795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 52325237 - 52325067
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatttnnnnnnnnttaatattgtattaaaaagtaaaatta 100  Q
    ||||||||||||| |||||||| |||||| ||||||||||||||| ||||||||||||||||||         |||||||| ||||||||||||||||||    
T  52325237 taaatgcaaagtggaatatattgaattgagaatgacgaaagtagtattaattagagttataattgaaaaaaaattaatattatattaaaaagtaaaatta 52325138  T
Q  101 atcagttattttatgataata-nnnnnnnacaaaagactcggttgttacagtaccgagggagtattaaata 170  Q
    ||| || ||||||||||||||        |||||| ||||||||||||| |||| ||||||||||||||||    
T  52325137 atcggtcattttatgataatattttttttacaaaatactcggttgttacggtactgagggagtattaaata 52325067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 54493968 - 54493907
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||    
T  54493968 taaatgtaaagtgaaatatattaaattggaaatgatgaaagtagtattaattagagttataa 54493907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 44234150 - 44234089
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||||||||||||||| |||||||| ||| ||||||||| ||||||||| ||||||    
T  44234150 taaatgcaaagtgaaatatattgaattgaaattgatgaaagtagtcttaattagaattataa 44234089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 26832131 - 26832071
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttata 61  Q
    ||||||||||||||||||||||||||||  | ||| ||||||||| |||||||||||||||    
T  26832131 taaatgcaaagtgaaatatattaaattggtagtgatgaaagtagtattaattagagttata 26832071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 37041927 - 37041983
Alignment:
Q  8 aaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||||| ||||| |||||| ||||||||| ||||||||||||||||||    
T  37041927 aaagtgaaatatattgaattggaaatgatgaaagtagtattaattagagttataatt 37041983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 32827351 - 32827412
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||||||||||||||| ||||  |||||| ||||||||| ||||||||||||||||    
T  32827351 taaatgtaaagtgaaatatattgaattagaaatgatgaaagtagtattaattagagttataa 32827412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41031632 - 41031571
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||||||||||||||| ||||| |||||| ||||||||| ||||||| ||||||||    
T  41031632 taaatgtaaagtgaaatatattgaattggaaatgatgaaagtagtattaattaaagttataa 41031571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 45392150 - 45392089
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||||||||||||||| ||||| |||||| ||||||| | ||||||||||||||||    
T  45392150 taaatgtaaagtgaaatatattgaattggaaatgatgaaagtaatattaattagagttataa 45392089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 27668374 - 27668437
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    |||||||||||||||||||||| |||| | | |||  |||||||| ||||||||||||||||||    
T  27668374 taaatgcaaagtgaaatatattgaattaagagtgataaaagtagtattaattagagttataatt 27668437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 26134750 - 26134811
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||||||||||||||| |||||  | ||| |||||||||  |||||||||||||||    
T  26134750 taaatgcaaagtgaaatatattgaattgggagtgatgaaagtagtactaattagagttataa 26134811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 43639563 - 43639624
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||||||||||||||| ||||| || |   ||||||||| ||||||||||||||||    
T  43639563 taaatgcaaagtgaaatatattgaattggaagttgtgaaagtagtattaattagagttataa 43639624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 39329797 - 39329860
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||  |||||||| |||||| | ||| ||||||||| ||||||||| ||||||||    
T  39329797 taaatgcaaagtagaatatattgaattgagagtgatgaaagtagtattaattagaattataatt 39329860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 14756161 - 14756215
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattaga 55  Q
    ||||||||||||  |||||||||||||||||||||  ||| |||| |||||||||    
T  14756161 taaatgcaaagtagaatatattaaattgaaaatgataaaaatagtattaattaga 14756215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 48744319 - 48744277
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagta 43  Q
    |||||| ||||||||||||||| |||||||||||| |||||||    
T  48744319 taaatgtaaagtgaaatatattgaattgaaaatgatgaaagta 48744277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 54458433 - 54458471
Alignment:
Q  74 ttaatattgtattaaaaagtaaaattaatcagttatttt 112  Q
    ||||||||||||| ||||||||||||| |||||||||||    
T  54458433 ttaatattgtattgaaaagtaaaattactcagttatttt 54458471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5245472 - 5245411
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||| ||||||| |||||||| |||||| | ||| |||||| || ||||||||||||||||    
T  5245472 taaatacaaagtggaatatattgaattgagagtgatgaaagtggtattaattagagttataa 5245411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 9218205 - 9218144
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||  |||||| | |||||| | ||| ||||||||| ||||||||||||||||    
T  9218205 taaatgcaaagtagaatataatgaattgagagtgatgaaagtagtattaattagagttataa 9218144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 15082062 - 15082002
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||| ||||| |||||||||||||||||| | ||| |||| |||| ||||||||||||||||    
T  15082062 taaaagcaaaatgaaatatattaaattgagagtgatgaaa-tagtattaattagagttataa 15082002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 32023148 - 32023209
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||  |||||||| |||||| | ||| ||||||| | ||||||||||||||||    
T  32023148 taaatgcaaagttgaatatattgaattgagagtgatgaaagtaatattaattagagttataa 32023209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 33994717 - 33994656
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||| |||||||| || ||| ||||| |||||| || ||||||||||||||||    
T  33994717 taaatgtaaagtggaatatattgaactgagaatgatgaaagtggtattaattagagttataa 33994656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 39365068 - 39365125
Alignment:
Q  5 tgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||| |||||||| |||||  ||||| |||| |||| ||||||||||||||||    
T  39365068 tgcaaagtggaatatattgaattgggaatgatgaaaatagtattaattagagttataa 39365125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39866600 - 39866661
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||||||||||| ||| |||||  | ||| |||||| || ||||||||||||||||    
T  39866600 taaatgcaaagtgaaatacattgaattgtgagtgatgaaagtggtattaattagagttataa 39866661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 259
Target Start/End: Complemental strand, 52325020 - 52324987
Alignment:
Q  226 gattgaagttctagtggagaagcgtagtaggaat 259  Q
    ||||||||||| ||||||||||||||||||||||    
T  52325020 gattgaagttcgagtggagaagcgtagtaggaat 52324987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 54122271 - 54122332
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||||||||||||||| ||||| || |   ||||||||| || |||||||||||||    
T  54122271 taaatgcaaagtgaaatatattgaattggaagttgtgaaagtagtattgattagagttataa 54122332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 54845563 - 54845624
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| ||||  || | | ||||||||| ||||||||||||||||    
T  54845563 taaatgcaaagtggaatatattgaattagaagtaatgaaagtagtattaattagagttataa 54845624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 47496229 - 47496165
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataattt 65  Q
    |||||| |||||  |||||||| |||| | | ||| ||||||||| |||||||||||||||||||    
T  47496229 taaatgtaaagtctaatatattgaattaagagtgatgaaagtagtattaattagagttataattt 47496165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 4794633 - 4794570
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||| |||||||| |||||||| ||| ||||||||| ||||||||||||||||||    
T  4794633 taaatgcaaagtggaatatattgaattgaaagtgatgaaagtagtattaattagagttataatt 4794570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23685019 - 23684958
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||||||||||||||| |||||| | ||| ||||||||| ||||||||||||||||    
T  23685019 taaatgcaaagtgaaatatattgaattgagagtgatgaaagtagtattaattagagttataa 23684958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28301494 - 28301433
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||||||||||||||| |||||| | ||| ||||||||| ||||||||||||||||    
T  28301494 taaatgcaaagtgaaatatattgaattgagagtgatgaaagtagtattaattagagttataa 28301433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41436139 - 41436078
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| |||||| ||||| ||||||||| ||||||||||||||||    
T  41436139 taaatgcaaagtggaatatattgaattgagaatgatgaaagtagtattaattagagttataa 41436078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 43077773 - 43077834
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||||||||||||||| |||||||||||| ||||||| | ||||||||||||||||    
T  43077773 taaatgtaaagtgaaatatattgaattgaaaatgatgaaagtaatattaattagagttataa 43077834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 44424310 - 44424373
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||  |||||||| |||||| ||||| ||||||||| ||||||||||||||||||    
T  44424310 taaatgcaaagttgaatatattgaattgagaatgatgaaagtagtattaattagagttataatt 44424373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 7650022 - 7650083
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| |||||||||||| |||  |||| ||||||||||||||||    
T  7650022 taaatgcaaagtggaatatattgaattgaaaatgatgaagatagtattaattagagttataa 7650083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24775855 - 24775916
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||||||||||||||| |||| ||||||| ||||||||| ||||| ||||||||||    
T  24775855 taaatgtaaagtgaaatatattgaattaaaaatgatgaaagtagtattaatcagagttataa 24775916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 435125 - 435184
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttat 60  Q
    |||||| ||||||||||||||| |||||| ||||| ||||||||| ||||||| ||||||    
T  435125 taaatgtaaagtgaaatatattgaattgagaatgatgaaagtagtattaattaaagttat 435184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 19515941 - 19515878
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    |||||||||||| ||||||||| ||||| || | | ||||||||| ||||||||||||||||||    
T  19515941 taaatgcaaagtaaaatatattgaattgtaagtaatgaaagtagtattaattagagttataatt 19515878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 28108429 - 28108483
Alignment:
Q  8 aaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||||| |||||| ||||| ||||||||| ||||||||||||||||    
T  28108429 aaagtggaatatattgaattgagaatgatgaaagtagtattaattagagttataa 28108483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 37247931 - 37247992
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||||||||||||||| ||||||   ||| ||||||| | ||||||||||||||||    
T  37247931 taaatgcaaagtgaaatatattgaattgagtgtgatgaaagtaatattaattagagttataa 37247992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 6075554 - 6075495
Alignment:
Q  5 tgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||  ||||||||||||||  | ||| ||||||||| ||||||||||||||||||    
T  6075554 tgcaaagtagaatatattaaattgggagtgatgaaagtagtattaattagagttataatt 6075495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 16864981 - 16865044
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    |||||| ||||||||||||||| |||||  ||||| ||||||  | ||||||||||||||||||    
T  16864981 taaatgtaaagtgaaatatattgaattgtgaatgatgaaagtgatattaattagagttataatt 16865044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 3100460 - 3100402
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagtta 59  Q
    ||||||||||||| |||||||||||||| || |   ||||||||| |||||||||||||    
T  3100460 taaatgcaaagtggaatatattaaattggaagttgtgaaagtagtattaattagagtta 3100402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 44284373 - 44284427
Alignment:
Q  8 aaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| || |||||||||||||| ||| ||||||| | ||||||||||||||||    
T  44284373 aaagtggaaaatattaaattgaaagtgatgaaagtattattaattagagttataa 44284427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8031801 - 8031740
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||||| ||||||||| |||||  |||||  |||||||| ||||||| ||||||||    
T  8031801 taaatgcaaagttaaatatattgaattgtgaatgataaaagtagtattaattaaagttataa 8031740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30757615 - 30757676
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||| || |||||||| |||||  ||||| ||||||||| ||||||||||||||||    
T  30757615 taaatgtaaattggaatatattgaattgggaatgatgaaagtagtattaattagagttataa 30757676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 14516 - 14455
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||| |||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  14516 taaatgtaaagtggaatatattgaattgaaaatgatgaaagtagtattaattagagttataa 14455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 38977051 - 38976990
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||| |||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  38977051 taaatgtaaagtggaatatattgaattgaaaatgatgaaagtagtattaattagagttataa 38976990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17237103 - 17237040
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||| |||||||| ||||||||  || ||||||||| ||||||||||||||||||    
T  17237103 taaatgcaaagtggaatatattgaattgaaagcgatgaaagtagtattaattagagttataatt 17237040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 49448901 - 49448838
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||  |||||||| |||||| ||||| ||||||||| ||||||||||||||||||    
T  49448901 taaatgcaaagtataatatattgaattgagaatgatgaaagtagtattaattagagttataatt 49448838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 4360455 - 4360515
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttata 61  Q
    ||||||||||||| |||||||| |||||  ||||| ||||||||| |||||||||||||||    
T  4360455 taaatgcaaagtggaatatattgaattgtgaatgatgaaagtagtattaattagagttata 4360515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 22872435 - 22872498
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||| |||||||| |||||| | ||| ||||||| | ||||||||||||||||||    
T  22872435 taaatgcaaagtggaatatattgaattgagagtgatgaaagtaatattaattagagttataatt 22872498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 47846959 - 47846896
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    |||||||||||||||||||||| ||||   | ||| ||||||||| ||||||||||||||||||    
T  47846959 taaatgcaaagtgaaatatattgaattaggagtgatgaaagtagtattaattagagttataatt 47846896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1825295 - 1825356
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||| |||||||| |||||||||||| |||| || | ||||||||||||||||    
T  1825295 taaatgtaaagtggaatatattgaattgaaaatgatgaaaataatattaattagagttataa 1825356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 37309758 - 37309697
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||||| ||||||||| |||||| | ||| ||||||| | ||||||||||||||||    
T  37309758 taaatgcaaagttaaatatattgaattgagagtgatgaaagtaatattaattagagttataa 37309697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39979840 - 39979779
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||| |||||||| ||||| |||||| ||||||| | ||||||||||||||||    
T  39979840 taaatgtaaagtggaatatattgaattggaaatgatgaaagtaatattaattagagttataa 39979779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41203797 - 41203736
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||| ||||||| |||||||| |||||||| |||  |||||||| ||||||||||||||||    
T  41203797 taaatacaaagtggaatatattgaattgaaagtgataaaagtagtattaattagagttataa 41203736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 42024248 - 42024309
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| ||||| || ||| ||||||||| ||||||| ||||||||    
T  42024248 taaatgcaaagtggaatatattgaattggaagtgatgaaagtagtattaattatagttataa 42024309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 42185843 - 42185904
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||| ||| |||||||||||| |||||| | ||| ||||||||| ||||||||||||||||    
T  42185843 taaatacaaggtgaaatatattgaattgagagtgatgaaagtagtattaattagagttataa 42185904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 47787894 - 47787955
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||| | ||||||||  |||||||||||| ||||||||| ||||||||||||||||    
T  47787894 taaatgtaaaataaaatatatggaattgaaaatgatgaaagtagtattaattagagttataa 47787955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 51527478 - 51527418
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||||||||||||||| |||||||||||| |||| || | ||||||||||||||||    
T  51527478 taaatgtaaagtgaaatatattgaattgaaaatgatgaaa-taatattaattagagttataa 51527418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 22020557 - 22020620
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||  |||||||| |||||| ||||  |||||||||  |||||||||||||||||    
T  22020557 taaatgcaaagtagaatatattgaattgagaatggtgaaagtagtaataattagagttataatt 22020620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 38160199 - 38160262
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||| |||||||||||||||| |||||| | |||  |||||| | ||||||||||||||||||    
T  38160199 taaatacaaagtgaaatatattgaattgagagtgataaaagtaatattaattagagttataatt 38160262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 38319971 - 38319908
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||  |||||||| |||||| | ||| ||||||||| |||||||| |||||||||    
T  38319971 taaatgcaaagtagaatatattgaattgagagtgatgaaagtagtattaattagtgttataatt 38319908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 41436541 - 41436478
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||  ||||| || |||||  ||||| ||||||||| ||||||||||||||||||    
T  41436541 taaatgcaaagtagaatattttgaattgcgaatgatgaaagtagtattaattagagttataatt 41436478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 51572275 - 51572338
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    |||||| |||||| |||||||| ||||| || |||  |||||||| ||||||||||||||||||    
T  51572275 taaatgtaaagtgtaatatattgaattggaagtgataaaagtagtattaattagagttataatt 51572338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27977207 - 27977145
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataat 63  Q
    ||||||||||||| |||||||| |||||| | ||| ||||||  | |||||||||||||||||    
T  27977207 taaatgcaaagtggaatatattgaattgagagtgatgaaagtgatattaattagagttataat 27977145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 34791075 - 34791121
Alignment:
Q  74 ttaatattgtattaaaaagtaaaattaatcagttattttatgataat 120  Q
    ||||||||||||||||||||||||| | ||| |||||||| ||||||    
T  34791075 ttaatattgtattaaaaagtaaaatgactcaattattttaggataat 34791121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 3686071 - 3686010
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||  |||||||| |||||| | ||| ||||||| | ||||||||||||||||    
T  3686071 taaatgcaaagttgaatatattgaattgagagtgatgaaagtaatattaattagagttataa 3686010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 12619748 - 12619687
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||| |||| ||||||||||| |||| ||| ||| ||||||||| ||||||||| ||||||    
T  12619748 taaatacaaaatgaaatatattgaatttaaagtgatgaaagtagtattaattagaattataa 12619687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 18849806 - 18849867
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||||||||||||||| ||||| || |   ||||||| | ||||||||||||||||    
T  18849806 taaatgcaaagtgaaatatattgaattggaagttgtgaaagtaatattaattagagttataa 18849867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 26799263 - 26799324
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||| |  |||||||| |||||| ||||| ||||||| | ||||||||||||||||    
T  26799263 taaatgcaaaatagaatatattgaattgagaatgatgaaagtactattaattagagttataa 26799324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 35998164 - 35998225
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||||| ||||||||| |||||| | ||  ||||||||| ||||||||||||||||    
T  35998164 taaatgtaaagtaaaatatattgaattgagagtggtgaaagtagtattaattagagttataa 35998225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 40293745 - 40293684
Alignment:
Q  3 aatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    |||| |||||||||  ||||||||||| |||||  |||||||| || |||||||||||||||    
T  40293745 aatgtaaagtgaaaagtattaaattgagaatgataaaagtagtatttattagagttataatt 40293684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 41710191 - 41710252
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| |||||  | ||| ||||||| | ||||||||||||||||    
T  41710191 taaatgcaaagtggaatatattgaattgggagtgatgaaagtaatattaattagagttataa 41710252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 48740580 - 48740519
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||| |||||||| |||| |||||||  |||||| | ||||||||||||||||    
T  48740580 taaatgtaaagtggaatatattgaattaaaaatgataaaagtaatattaattagagttataa 48740519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 49306647 - 49306586
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| ||||   | ||| ||||||||| ||||||||||||||||    
T  49306647 taaatgcaaagtggaatatattgaattaggagtgatgaaagtagtattaattagagttataa 49306586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 54729531 - 54729591
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| ||||||   ||| ||||||||| ||||||||||||||||    
T  54729531 taaatgcaaagtggaatatattgaattgagg-tgatgaaagtagtattaattagagttataa 54729591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 39976438 - 39976498
Alignment:
Q  2 aaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||||| |||||||| |||||| | ||| ||||||||| ||||| || |||||||    
T  39976438 aaatgcaaagtggaatatattgaattgagagtgatgaaagtagtattaatcagtgttataa 39976498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 47277729 - 47277793
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataattt 65  Q
    |||||| ||||| ||||||||| |||||| | |||  |||||||| ||||||| |||||||||||    
T  47277729 taaatgtaaagtaaaatatattgaattgagagtgattaaagtagtattaattatagttataattt 47277793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28277086 - 28277147
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||||||||||||||| |||||||||||| |||||| || ||||||||||||||||    
T  28277086 taaatgtaaagtgaaatatattgaattgaaaatgatgaaagtggtattaattagagttataa 28277147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 26756029 - 26755975
Alignment:
Q  8 aaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  26756029 aaagtgtaatatattgaattgaaaatgatgaaagtagtattaattagagttataa 26755975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 37525109 - 37525051
Alignment:
Q  3 aatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||| |||||| |||||||| ||||||||||||||||| |||| ||||||||||||||||    
T  37525109 aatgaaaagtggaatatattgaattgaaaatgacgaaa-tagtattaattagagttataa 37525051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 17342888 - 17342826
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataat 63  Q
    ||||| |||||||||||||||| |||||| | |||  |||||||| |||||||||||||||||    
T  17342888 taaatacaaagtgaaatatattgaattgagagtgataaaagtagtattaattagagttataat 17342826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8327777 - 8327716
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||| || |||||||| |||||| | ||| ||||||||| ||||||||||||||||    
T  8327777 taaatgcaaaatggaatatattgaattgagagtgatgaaagtagtattaattagagttataa 8327716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 19532967 - 19533028
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||||||||||||||| || || |||||| ||||||||| ||||||| ||||||||    
T  19532967 taaatgtaaagtgaaatatattgaactgtaaatgatgaaagtagtattaattaaagttataa 19533028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 32587825 - 32587764
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||||||||||||||| |||||| | ||| |||| || | ||||||||||||||||    
T  32587825 taaatgcaaagtgaaatatattgaattgagagtgatgaaattattattaattagagttataa 32587764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 36467243 - 36467304
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||||||||||||||| ||||| |||||| |||| |||| |||||| |||||||||    
T  36467243 taaatgtaaagtgaaatatattgaattggaaatgatgaaaatagtattaatttgagttataa 36467304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 45889296 - 45889357
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| ||||   ||||| ||||||||| ||||||||||||||||    
T  45889296 taaatgcaaagtggaatatattgaattatgaatgatgaaagtagtattaattagagttataa 45889357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 46536400 - 46536340
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttata 61  Q
    ||||| ||||||| ||||||||||||| | | ||| ||||||||| |||||||||||||||    
T  46536400 taaatacaaagtggaatatattaaattaagagtgatgaaagtagtattaattagagttata 46536340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 29225813 - 29225750
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||  |||||||| |||||  | ||| ||||||||| ||||||||||||||||||    
T  29225813 taaatgcaaagtagaatatattgaattgggagtgatgaaagtagtattaattagagttataatt 29225750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 35622827 - 35622890
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||  |||||||| |||||  ||| | ||||||||| ||||||||||||||||||    
T  35622827 taaatgcaaagtagaatatattgaattggcaattatgaaagtagtattaattagagttataatt 35622890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 8773299 - 8773241
Alignment:
Q  4 atgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||| ||||||||||| |  || ||| ||||||||| ||||||||||||||||    
T  8773299 atgcaaagtggaatatattaaactagaagtgatgaaagtagtattaattagagttataa 8773241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 3555603 - 3555664
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| |||||  |  || ||||||||| ||||||||||||||||    
T  3555603 taaatgcaaagtggaatatattgaattgggatagatgaaagtagtattaattagagttataa 3555664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 7785322 - 7785383
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||||||||||||||| |||||| |  ||  |||||||| ||||||||||||||||    
T  7785322 taaatgtaaagtgaaatatattgaattgagagcgataaaagtagtattaattagagttataa 7785383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 27698860 - 27698811
Alignment:
Q  13 gaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||| |||||| ||||| ||||||| | ||||||||||||||||    
T  27698860 gaaatatattgaattgagaatgatgaaagtaatattaattagagttataa 27698811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28839399 - 28839338
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| |||||  | ||| ||||||||| ||||||| ||||||||    
T  28839399 taaatgcaaagtggaatatattgaattgggagtgatgaaagtagtattaattatagttataa 28839338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 36232851 - 36232900
Alignment:
Q  15 aatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    |||||||| ||||| |||||  ||||||||| ||||||||||||||||||    
T  36232851 aatatattgaattggaaatggtgaaagtagtattaattagagttataatt 36232900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 50267486 - 50267547
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||||||||||||||| |||||  ||||| ||||||| | ||||||||| ||||||    
T  50267486 taaatgtaaagtgaaatatattgaattgggaatgatgaaagtaatattaattagaattataa 50267547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 51749231 - 51749292
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| |||||  | ||| ||||||| | ||||||||||||||||    
T  51749231 taaatgcaaagtggaatatattgaattgggagtgatgaaagtaatattaattagagttataa 51749292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 948635 - 948695
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttata 61  Q
    ||||||||||||| |||||||| |||| ||| ||| |||  |||| |||||||||||||||    
T  948635 taaatgcaaagtggaatatattgaattcaaagtgatgaagatagtattaattagagttata 948695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2571423 - 2571363
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttata 61  Q
    ||||||||||||  |||||||| |||||| | ||| ||||||||| |||| ||||||||||    
T  2571423 taaatgcaaagtagaatatattgaattgagagtgatgaaagtagtattaactagagttata 2571363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 34813977 - 34813917
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttata 61  Q
    ||||||||||||  |||||||| |||||| ||||| ||||||||| || |||||| |||||    
T  34813977 taaatgcaaagtagaatatattgaattgagaatgatgaaagtagtattcattagaattata 34813917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 25778804 - 25778741
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    |||||||||||| ||||||||| ||||| || ||| ||||||||| ||||||||||||||||||    
T  25778804 taaatgcaaagtaaaatatattgaattggaagtgatgaaagtagtattaattagagttataatt 25778741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 5724754 - 5724815
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||||||||||||||| ||||  |||||| ||||||||| ||||||||||||||||    
T  5724754 taaatgtaaagtgaaatatattgaattagaaatgaagaaagtagtattaattagagttataa 5724815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 23703976 - 23703915
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||| ||||||||||| ||||||||||||  |||||||| ||||||||||||||||    
T  23703976 taaatgtaaaatgaaatatattgaattgaaaatgataaaagtagtattaattagagttataa 23703915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 29434627 - 29434688
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| |||||  ||||| ||||||||| ||||||||||||||||    
T  29434627 taaatgcaaagtggaatatattgaattgtgaatgatgaaagtagtattaattagagttataa 29434688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 31581490 - 31581551
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||| || |||||||| |||||||||||| ||||||||| ||||||||||||||||    
T  31581490 taaatgtaaaatggaatatattgaattgaaaatgatgaaagtagtattaattagagttataa 31581551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 34963858 - 34963919
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||||||||||||||| |||||| ||||| ||||||| | ||||||||||||||||    
T  34963858 taaatgtaaagtgaaatatatttaattgagaatgatgaaagtaatattaattagagttataa 34963919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 46288480 - 46288539
Alignment:
Q  3 aatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||| |||||||| |||||||| | | ||||||||| ||||||||||||||||    
T  46288480 aatgcaaagtggaatatattgaattgaaagttatgaaagtagtattaattagagttataa 46288539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 1643385 - 1643442
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagtt 58  Q
    ||||||||||||| ||||||||||||||||| |   ||||||||| ||||||||||||    
T  1643385 taaatgcaaagtggaatatattaaattgaaagttgggaaagtagtattaattagagtt 1643442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2846723 - 2846784
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||| ||||||| |||||||| ||||| || ||| ||||||||| ||||||||||||||||    
T  2846723 taaattcaaagtggaatatattgaattggaattgatgaaagtagtattaattagagttataa 2846784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 30463076 - 30463015
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||| || |||||||| |||||||||||| ||||||| | ||||||||||||||||    
T  30463076 taaatgtaaaatggaatatattgaattgaaaatgatgaaagtaatattaattagagttataa 30463015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 37157230 - 37157169
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||  ||||||||||||||||||||| ||||  ||| ||||||||||||||||    
T  37157230 taaatgtaaagtagaatatattaaattgaaaatgatgaaaaaagtattaattagagttataa 37157169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 48981716 - 48981655
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||| |||||||||||||| ||||||  |||||||| ||||||||| ||||||    
T  48981716 taaatgtaaagtggaatatattaaattggaaatgataaaagtagtgttaattagaattataa 48981655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 2842099 - 2842160
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||||||||||||||| |||| | | ||| ||||||||| ||||||| | ||||||    
T  2842099 taaatgcaaagtgaaatatattgaatttagagtgatgaaagtagtattaattataattataa 2842160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 29257607 - 29257546
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| |||||  | ||| ||||||| | ||||||||||||||||    
T  29257607 taaatgcaaagtggaatatattgaattgggagtgatgaaagtaatattaattagagttataa 29257546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 36117721 - 36117660
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||| |||||||| |||||||||||| ||||||  | ||||||| ||||||||    
T  36117721 taaatgtaaagtggaatatattgaattgaaaatgatgaaagtgatattaattaaagttataa 36117660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 47454064 - 47454003
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||||||||||||||| | ||| |||||| |||||||||  |||||| ||||||||    
T  47454064 taaatgtaaagtgaaatatattgatttgtaaatgatgaaagtagtaataattatagttataa 47454003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 25940796 - 25940856
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttata 61  Q
    |||||||||| |  ||||||||||||| | | ||| ||||||||| |||||||||||||||    
T  25940796 taaatgcaaactagaatatattaaatttagagtgatgaaagtagtattaattagagttata 25940856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 44604529 - 44604585
Alignment:
Q  6 gcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||| |||||||| | |||| | ||| ||||||||| ||||||||||||||||    
T  44604529 gcaaagtggaatatattgagttgagagtgatgaaagtagtattaattagagttataa 44604585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8947 - 8886
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| |||||| ||||| ||||||| | ||||||||||||||||    
T  8947 taaatgcaaagtggaatatattgaattgagaatgatgaaagtaatattaattagagttataa 8886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 858395 - 858334
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||| ||||||||||| |||||| | ||| ||||||||| ||||||||||||||||    
T  858395 taaatgcaaaatgaaatatatttaattgagagtgatgaaagtagtattaattagagttataa 858334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17243002 - 17243063
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| |||||| | ||| ||||||||| ||||||||||||||||    
T  17243002 taaatgcaaagtggaatatattgaattgagagtgatgaaagtagtattaattagagttataa 17243063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 39183675 - 39183738
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||| |||||||| |||||| | ||| ||||||| | ||||||||||||||||||    
T  39183675 taaatgcaaagtggaatatattgaattgagagtgatgaaagtaatattaattagagttataatt 39183738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8369744 - 8369805
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| |||||||| |   ||||||||| ||||||||||||||||    
T  8369744 taaatgcaaagtggaatatattgaattgaaagttgtgaaagtagtattaattagagttataa 8369805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 20189952 - 20189891
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||| |||||||| |||||| ||||| ||||||| | ||||||||||||||||    
T  20189952 taaatgtaaagtggaatatattgaattgagaatgatgaaagtaatattaattagagttataa 20189891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 35334574 - 35334635
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| |||||  | ||| ||||||||| ||||||||||||||||    
T  35334574 taaatgcaaagtggaatatattgaattgggagtgatgaaagtagtattaattagagttataa 35334635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 42211393 - 42211332
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||||||||||||||| |||||  | ||| ||||||||| |||||| |||||||||    
T  42211393 taaatgcaaagtgaaatatattgaattgtgagtgatgaaagtagtattaatttgagttataa 42211332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 6735405 - 6735465
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttata 61  Q
    ||||||||||||| |||||||||||||  || ||| ||||||| | |||||||||||||||    
T  6735405 taaatgcaaagtggaatatattaaatttgaagtgatgaaagtaatattaattagagttata 6735465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 13422475 - 13422522
Alignment:
Q  74 ttaatattgtattaaaaagtaaaattaatcagttattttatgataata 121  Q
    ||||||||||||| |||||| |||| ||||||||||||||||| ||||    
T  13422475 ttaatattgtattgaaaagtgaaatgaatcagttattttatgacaata 13422522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 16283635 - 16283698
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||| |||||||| |||||| | ||| ||||||||  | ||||||||||||||||    
T  16283635 taaatgcaaagtggaatatattgaattgagagtgatgaaagtagcatcaattagagttataatt 16283698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 36469142 - 36469205
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||  |||||||| |||| ||| ||| ||||||||| ||||||||| ||||||||    
T  36469142 taaatgcaaagtataatatattgaattaaaagtgatgaaagtagtattaattagaattataatt 36469205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 39035909 - 39035964
Alignment:
Q  7 caaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||||||||||||| | ||   ||||||||||||||||| |||||||    
T  39035909 caaagtgaaatatattaaattgagagtggtaaaagtagttttaattagtgttataa 39035964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 42479602 - 42479539
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    |||||||||| || |||||||||||||||||||||  ||||||   ||||||| ||||||||||    
T  42479602 taaatgcaaaatgcaatatattaaattgaaaatgataaaagtaacattaattatagttataatt 42479539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 33498542 - 33498607
Alignment:
Q  1 taaatgcaaagtgaaatat--attaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||  |||||  |||||||||| ||||| |||||| || ||||||||||||||||||    
T  33498542 taaatgcaaagtagaatatgtattaaattgagaatgaagaaagttgtattaattagagttataatt 33498607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 36446735 - 36446789
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattaga 55  Q
    ||||||||||||  |||||||| |||||||| ||| ||||||||| |||||||||    
T  36446735 taaatgcaaagtataatatattgaattgaaagtgatgaaagtagtattaattaga 36446789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 41184170 - 41184116
Alignment:
Q  8 aaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||| |||||||||| ||||| ||||||| | ||||||||||||||||    
T  41184170 aaagtggaataaattaaattgagaatgatgaaagtaatattaattagagttataa 41184116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 7179528 - 7179589
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||  |||||||| |||||| ||||| || |||||  ||||||||||||||||    
T  7179528 taaatgcaaagtagaatatattgaattgagaatgatgagagtagcattaattagagttataa 7179589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7613767 - 7613706
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||||||||||||||| ||||| ||||||  |||||| | ||||||| ||||||||    
T  7613767 taaatgtaaagtgaaatatattgaattggaaatgataaaagtaatattaattatagttataa 7613706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8692866 - 8692927
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||| ||||||||||||||||| || |   ||||||| | ||||||||||||||||    
T  8692866 taaatgcaaaatgaaatatattaaattggaagttgtgaaagtaatattaattagagttataa 8692927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 11099525 - 11099586
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||| ||||||| |||||||| |||||  | ||| ||||||||| ||||||||||||||||    
T  11099525 taaatacaaagtggaatatattgaattgggagtgatgaaagtagtattaattagagttataa 11099586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 15254811 - 15254762
Alignment:
Q  15 aatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    |||||||| |||||||| ||| ||||||| | ||||||||||||||||||    
T  15254811 aatatattgaattgaaagtgatgaaagtaatattaattagagttataatt 15254762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 25814424 - 25814363
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| ||||||||||||||| ||||| |||||| || |||| | ||||||| ||||||||    
T  25814424 taaatgtaaagtgaaatatattgaattggaaatgatgagagtaatattaattaaagttataa 25814363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 6629440 - 6629504
Alignment:
Q  1 taaatgcaaagtg-aaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||| |||||||||||||||  | ||| |||||||   ||||||||||||||||||    
T  6629440 taaatgcaaagtggaaatatattaaattgggagtgatgaaagtaaaattaattagagttataatt 6629504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 28539056 - 28538993
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||  ||||||||||||| ||| ||| |||||| || ||||||||||||||||||    
T  28539056 taaatgcaaagtagaatatattaaattaaaagtgatgaaagtggtattaattagagttataatt 28538993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 33109431 - 33109372
Alignment:
Q  3 aatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||| ||| ||||||||||| |||||| ||||| ||||||||| ||||||||||||||||    
T  33109431 aatgtaaaatgaaatatattgaattgagaatgatgaaagtagtattaattagagttataa 33109372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 6787341 - 6787295
Alignment:
Q  15 aatatattaaattgaaaatgacgaaagtagttttaattagagttata 61  Q
    |||||||| |||||||| ||| |||||||||||||||||||||||||    
T  6787341 aatatatttaattgaaagtgatgaaagtagttttaattagagttata 6787295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 8569787 - 8569849
Alignment:
Q  2 aaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    |||||||||||||||||||||||||||| | ||  ||||||| | |||||||||| |||||||    
T  8569787 aaatgcaaagtgaaatatattaaattgagagtggtgaaagtaatattaattagagctataatt 8569849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 20383823 - 20383777
Alignment:
Q  74 ttaatattgtattaaaaagtaaaattaatcagttattttatgataat 120  Q
    |||||||||||||||||||| |||| | |||||||||||||||||||    
T  20383823 ttaatattgtattaaaaagtgaaataagtcagttattttatgataat 20383777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26356329 - 26356267
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataat 63  Q
    |||||||||||||||||||||| ||||  || ||| ||||||||| ||||||| |||||||||    
T  26356329 taaatgcaaagtgaaatatattgaattagaagtgatgaaagtagtattaattaaagttataat 26356267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 7301127 - 7301188
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||| |||||||| |||||||||||| ||||||| | ||| ||||||||||||    
T  7301127 taaatgtaaagtggaatatattgaattgaaaatgatgaaagtaatattagttagagttataa 7301188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 15321272 - 15321335
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||  |||||||| |||||| ||||  ||||||||| |||||||| |||||||||    
T  15321272 taaatgcaaagtagaatatattgaattgagaatgttgaaagtagtattaattagtgttataatt 15321335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 15081476 - 15081422
Alignment:
Q  8 aaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||||| ||||| |||| | ||||||||| ||||||||||||||||    
T  15081476 aaagtggaatatattgaattggaaattatgaaagtagtattaattagagttataa 15081422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30063996 - 30064057
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| |||||  | ||| ||||||| | ||||||||||||||||    
T  30063996 taaatgcaaagtggaatatattgaattgggagtgatgaaagtaatattaattagagttataa 30064057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 32967331 - 32967385
Alignment:
Q  8 aaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||||| |||||| ||||| ||||||||| ||||||||||||||||    
T  32967331 aaagtggaatatattgaattgagaatgatgaaagtagtattaattagagttataa 32967385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 22325002 - 22325063
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||| |||||||| |||||||||||| |||| |||||||||  ||||||||||    
T  22325002 taaatgtaaagtggaatatattgaattgaaaatgatgaaaatagttttaaccagagttataa 22325063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 33925131 - 33925192
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| |||||||| |   ||||||||| ||||||||||||||||    
T  33925131 taaatgcaaagtggaatatattgaattgaaagttgtgaaagtagtattaattagagttataa 33925192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38252485 - 38252546
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||| |||||||| ||||| |||||| ||||||||| || |||||||||||||    
T  38252485 taaatgtaaagtggaatatattgaattggaaatgatgaaagtagtattgattagagttataa 38252546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 45425545 - 45425484
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||||||||   ||||| ||||||| | ||||||||||||||||    
T  45425545 taaatgcaaagtggaatatattaaattaggaatgatgaaagtaatattaattagagttataa 45425484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 3442532 - 3442480
Alignment:
Q  12 tgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||| ||||| |||||||||||| |||| |||| ||||||||||||||||||    
T  3442532 tgaaagatattgaattgaaaatgatgaaaatagtattaattagagttataatt 3442480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2195528 - 2195465
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||  |||||||| |||||  | ||| ||||||||| ||||||||||||||||||    
T  2195528 taaatgcaaagtagaatatattgaattgggagtgatgaaagtagtattaattagagttataatt 2195465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 14748753 - 14748816
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||  |||||||| |||||| ||||  ||||||||| |||||||| |||||||||    
T  14748753 taaatgcaaagtagaatatattgaattgagaatggtgaaagtagtattaattagtgttataatt 14748816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 27868372 - 27868435
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||  |||||||| |||||| ||||| ||||||||| ||||||| | ||||||||    
T  27868372 taaatgcaaagtagaatatattgaattgagaatgatgaaagtagtattaattaaaattataatt 27868435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 27987718 - 27987655
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    |||||||||| ||||||||||| |||||  | ||| ||||||||| ||||||| ||||||||||    
T  27987718 taaatgcaaaatgaaatatattgaattgtgagtgatgaaagtagtattaattatagttataatt 27987655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 28045020 - 28044957
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    |||||||||| ||||||||||| |||||  | ||| ||||||||| ||||||| ||||||||||    
T  28045020 taaatgcaaaatgaaatatattgaattgtgagtgatgaaagtagtattaattatagttataatt 28044957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42412430 - 42412493
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    ||||||||||||| |||||||| |||||  | ||| ||||||||| |||||||||| |||||||    
T  42412430 taaatgcaaagtggaatatattgaattgggagtgatgaaagtagtattaattagagctataatt 42412493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4274346 - 4274407
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||||||||||||||| |||||| | ||  |||| || | ||||||||||||||||    
T  4274346 taaatgcaaagtgaaatatattgaattgagagtggtgaaaataatattaattagagttataa 4274407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5392109 - 5392048
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| |||||  | ||  ||||||||| ||||||||||||||||    
T  5392109 taaatgcaaagtggaatatattgaattgggagtgttgaaagtagtattaattagagttataa 5392048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 22490451 - 22490390
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||| ||||||| |||||||| |||||| ||||| || ||| || ||||||||||||||||    
T  22490451 taaatacaaagtggaatatattgaattgagaatgatgatagttgtattaattagagttataa 22490390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 28802827 - 28802766
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| |||||| | ||| |||| || | ||||||||||||||||    
T  28802827 taaatgcaaagtggaatatattgaattgagagtgatgaaaatattattaattagagttataa 28802766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 33826277 - 33826228
Alignment:
Q  15 aatatattaaattgaaaatgacgaaagtagttttaattagagttataatt 64  Q
    |||||||| |||||| ||||| ||||||||| || |||||||||||||||    
T  33826277 aatatattgaattgagaatgatgaaagtagtattgattagagttataatt 33826228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39171603 - 39171542
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| |||||  | ||| |||| |||| ||||||||||||||||    
T  39171603 taaatgcaaagtggaatatattgaattgtgagtgatgaaaatagtattaattagagttataa 39171542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 42558628 - 42558685
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagtt 58  Q
    ||||||||||||| |||||||| |||| | | ||| ||||||||| ||||||||||||    
T  42558628 taaatgcaaagtggaatatattgaattaagagtgatgaaagtagtattaattagagtt 42558685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 44790469 - 44790530
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||| |||||||| |||||  ||||  ||||||||| ||||||||||||||||    
T  44790469 taaatgtaaagtggaatatattgaattgggaatggtgaaagtagtattaattagagttataa 44790530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 9014659 - 9014599
Alignment:
Q  2 aaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||||||||| |||||||| |||||  ||||| ||||||||| ||||| ||| ||||||    
T  9014659 aaatgcaaagtgtaatatattgaattgtgaatgatgaaagtagtattaataagaattataa 9014599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 26382 - 26321
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    |||||| |||||| |||||||| ||||| ||||||  |||||| | ||||||||||||||||    
T  26382 taaatgtaaagtggaatatattgaattggaaatgataaaagtaatattaattagagttataa 26321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 26673 - 26612
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||||||||||| |||||||| |||||  | ||| ||||||||| ||||||||| ||||||    
T  26673 taaatgcaaagtggaatatattgaattgcgagtgatgaaagtagtattaattagaattataa 26612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 394838 - 394777
Alignment:
Q  1 taaatgcaaagtgaaatatattaaattgaaaatgacgaaagtagttttaattagagttataa 62  Q
    ||||| ||||||| |||||| | |||||| | ||| ||||||||| ||||||||||||||||    
T  394838 taaatacaaagtggaatatagtgaattgagagtgatgaaagtagtattaattagagttataa 394777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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