View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16517_low_7 (Length: 439)
Name: NF16517_low_7
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16517_low_7 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 3995091 - 3995512
Alignment:
| Q |
18 |
aaaacagaacacaacgtaacaaaactcaacctaaacccacacccaaaaaccatttctttcaaaagcaaaaacgcttcctttgtaaacccattcccaacat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3995091 |
aaaacagaacacaacgtaacaaaactcaacctaaacccacacccaaaaaccatttctttcaaaagcaaaaacgcttcctttgtaaacccattcccaacat |
3995190 |
T |
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| Q |
118 |
aaccaacgatcataacagtccaagcaacctcgttcctctccggcatttcatcaaacaacactctcccactctccacactctcccatttcaccaaaccttc |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3995191 |
aaccaacaatcataacagtccaagcaacctcgttcctctccggcatttcatcaaacaacactctcccactctccacactctcccatttcaccaaaccttc |
3995290 |
T |
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| Q |
218 |
caaaaaacaactccaagacacaacactacgaacttcaatcccttcaaacacttttctagcctcacccacaagcccaaatttaacatacacattcatcaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3995291 |
caaaaaacaactccaagacacaacactacgaacttcaatcccttcaaacatttttctagcctcacccacaagcccaaatttaacatacacattcatcaaa |
3995390 |
T |
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| Q |
318 |
gcattacaaactttatcaaacttcacaaatccaaatttcacaacacccacatgcatttgagacccaactttagtgtctcctccaccaagtcttgaacaag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3995391 |
gcattacaaactttatcaaacttcacaaatccaaatttcacaacacccacatgcatttgagacccaactttagtgtctcctccaccaagtcttgcacaag |
3995490 |
T |
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| Q |
418 |
cattgagtgcacaaaccatgac |
439 |
Q |
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| T |
3995491 |
cattgagtgcacaaaccatgac |
3995512 |
T |
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