View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16517_low_9 (Length: 424)
Name: NF16517_low_9
Description: NF16517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16517_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 10 - 408
Target Start/End: Complemental strand, 39567031 - 39566633
Alignment:
| Q |
10 |
acatcatcaagctttgccaagtaagtttggaaattttacattttgatttaaacattttgttccaacctcaagtcggttgtattgcttttctaaggtatta |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39567031 |
acatcttcaagctttgccaagtaagtttggaaattttacattttgatttaaacattttgttccgacctcaagtcggttgtattgcttttctaaggtatta |
39566932 |
T |
|
| Q |
110 |
tccgctttgggcactgtgtaatccctcacagttttgcctttagttaaaaggtgcctcagtgggctgagccactatccccaagcaatgttggacttttttg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39566931 |
tccgctttgggcactgtgtaatccctcacagttttgcctttagttaaaaggtgcctcagtgggctgagccattatccccaagcaatgttggacttttttg |
39566832 |
T |
|
| Q |
210 |
gtgtatggaacacatcatatatcatataatgcaatgtatgcgtgcattattcatatccattactgatgactaccgtctccttttagctagctgtaatggc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39566831 |
gtgtatggaacacatcatatatcatataatgcaatgtatgcgtgcattattcatatccattactgatgactaccctctccttttagctagctgtaatggc |
39566732 |
T |
|
| Q |
310 |
aatgatcgccatgaccctcttcctccggactgaaatgcacagagattcagtgactcatggaggtatatatgtaggtgcattgttctatggcgttgttgt |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39566731 |
aatgatcgccatgaccctcttcctccggactgaaatgcacagagattcagtgactcatggaggtatatatgtaggtgcattgttctatggcgttgttgt |
39566633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 268 - 400
Target Start/End: Original strand, 39361629 - 39361761
Alignment:
| Q |
268 |
attactgatgactaccgtctccttttagctagctgtaatggcaatgatcgccatgaccctcttcctccggactgaaatgcacagagattcagtgactcat |
367 |
Q |
| |
|
||||||||||||| || |||| |||||||| ||| ||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
39361629 |
attactgatgacttccctctcgttttagcttgctataatggcaatgattgccatgaccatcttcctccggactgagatgcacagagattcagtggctcat |
39361728 |
T |
|
| Q |
368 |
ggaggtatatatgtaggtgcattgttctatggc |
400 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
39361729 |
ggagatatatatgtaggtgcattgttctatggc |
39361761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 254 - 408
Target Start/End: Complemental strand, 39549858 - 39549704
Alignment:
| Q |
254 |
cattattcatatccattactgatgactaccgtctccttttagctagctgtaatggcaatgatcgccatgaccctcttcctccggactgaaatgcacagag |
353 |
Q |
| |
|
||||||| | ||||||||||||||||| || ||||||||||| || | ||||||||||||| || |||||| ||||| |||||||||| |||||||||| |
|
|
| T |
39549858 |
cattattaaaatccattactgatgacttccctctccttttagatatgtataatggcaatgattgcaatgaccatcttcttccggactgagatgcacagag |
39549759 |
T |
|
| Q |
354 |
attcagtgactcatggaggtatatatgtaggtgcattgttctatggcgttgttgt |
408 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39549758 |
attcggtgactcttggaggcatatatgtaggtgcattgttctatggcgttgttgt |
39549704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 236 - 406
Target Start/End: Complemental strand, 39540361 - 39540191
Alignment:
| Q |
236 |
taatgcaatgtatgcgtgcattattcatatccattactgatgactaccgtctccttttagctagctgtaatggcaatgatcgccatgaccctcttcctcc |
335 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||||||||||| | || | |||||||||||| ||||||||||||||| || |||||| ||||| ||| |
|
|
| T |
39540361 |
taatgcaatgtatgtgcgcattattcaaatccattactgatagtttccctatccttttagctatgtgtaatggcaatgattgcaatgaccatcttcttcc |
39540262 |
T |
|
| Q |
336 |
ggactgaaatgcacagagattcagtgactcatggaggtatatatgtaggtgcattgttctatggcgttgtt |
406 |
Q |
| |
|
|||| || ||||||||||||||| ||||||||||||| ||||||||||||||| | |||||||| |||||| |
|
|
| T |
39540261 |
ggacagagatgcacagagattcattgactcatggaggcatatatgtaggtgcaatattctatggtgttgtt |
39540191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 264 - 403
Target Start/End: Original strand, 39335793 - 39335932
Alignment:
| Q |
264 |
atccattactgatgactaccgtctccttttagctagctgtaatggcaatgatcgccatgaccctcttcctccggactgaaatgcacagagattcagtgac |
363 |
Q |
| |
|
||||||||||||||||| || |||| |||||||| ||||||||||||||||| ||||||| |||||||||| |||||||||| || |||||||||| |
|
|
| T |
39335793 |
atccattactgatgacttccttctcgttttagctcgctgtaatggcaatgataaccatgactgtcttcctccgaactgaaatgcgcaaagattcagtggt |
39335892 |
T |
|
| Q |
364 |
tcatggaggtatatatgtaggtgcattgttctatggcgtt |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39335893 |
gcatggaggtatatatgtaggtgcattgttctttggcgtt |
39335932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 408
Target Start/End: Original strand, 39347058 - 39347202
Alignment:
| Q |
264 |
atccattactgatgactaccgtctccttttagctagctgtaatggcaatgatcgccatgaccctcttcctccggactgaaatgcacagagattcagtgac |
363 |
Q |
| |
|
|||||| | |||||||| || |||| |||||||| ||||||||||||||||| ||||||||| |||||||||| || ||||||| || |||||| ||| | |
|
|
| T |
39347058 |
atccatcattgatgacttccttctcattttagcttgctgtaatggcaatgatagccatgaccgtcttcctccgaacagaaatgcgcaaagattctgtggc |
39347157 |
T |
|
| Q |
364 |
tcatggaggtatatatgtaggtgcattgttctatggcgttgttgt |
408 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| ||||| |
|
|
| T |
39347158 |
gcatggaggtatatatgtaggtgcgttgttctttggcgtcgttgt |
39347202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 39361382 - 39361446
Alignment:
| Q |
10 |
acatcatcaagctttgccaagtaagtttggaaattttacattttgatttaaacattttgttccaa |
74 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||| |||||||| |
|
|
| T |
39361382 |
acatcttcaagctttgccaagtaagtttggaaattagacattttcattttaacatcatgttccaa |
39361446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 39335573 - 39335606
Alignment:
| Q |
10 |
acatcatcaagctttgccaagtaagtttggaaat |
43 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
39335573 |
acatcttcaagctttgccaagtaagtttggaaat |
39335606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University