View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16518_low_1 (Length: 451)
Name: NF16518_low_1
Description: NF16518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16518_low_1 |
 | |
|
| [»] chr7 (7 HSPs) |
| |
|
| [»] chr5 (7 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
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Alignment Details
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Complemental strand, 5303620 - 5303190
Alignment:
| Q |
19 |
ggtgggctgtaagattttccgaggaaatcaagaggcattattgtgactttcataattagttagacgctgtttttaccaaacagagttttagtcaaataaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5303620 |
ggtgggctgtaagattttccgaggaaatcaagaggcattattgtgactttcataattggttagacgctatttttaccaaacagagttttagtcaaataaa |
5303521 |
T |
|
| Q |
119 |
taactattgttaaaatataaagtgaatcacaagtgtattatttaatatgatggtacatgttgaacacaagatgaaatttcatccttttacgttaaaatta |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
5303520 |
taactattgtaaaaatataaagtgaatcacaagtgtattatttaatatgagggtacatgttgaacactagatgaaatttcatcctt--acgtaaaaatta |
5303423 |
T |
|
| Q |
219 |
aacaaattgaaaattgatacatgaaaagaaaataattaagcatctcatatagctacactgcgcaaaacaaccgtttcaattgtaagtcctggtccaaaac |
318 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5303422 |
aacaaattgaaaattgatacatgaaaacaaaataattaagcatctcatatagcgacactgcgcaaaacaaccgtttcaattgtaagtcctggtccaaaac |
5303323 |
T |
|
| Q |
319 |
caaataacacaccccattcaagtccttctccagttgtcttcaaaccgtctttagttgatttctttctcatttcatctaagataaacaaaacacatgcact |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5303322 |
caaataacacaccccattcaagtccttctccagttgtcttcaacccatctttagttgatttctttctcatttcatctaagataaacaaaacacatgcact |
5303223 |
T |
|
| Q |
419 |
tgacatatttccatattcactgagcacttctct |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
5303222 |
tgacatatttccatattcactgagcacttctct |
5303190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 105 - 451
Target Start/End: Complemental strand, 5285353 - 5285002
Alignment:
| Q |
105 |
tttagtcaaataaataactattgttaaaatataaagtgaatcacaagtgtattattt-aatatgatggtacatgttgaacacaagatgaaatttcatcct |
203 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| |||||||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
5285353 |
tttagtcaaataaataactattgttaatatataaagctaatcacaattgtattattttaatatgatggtatatattgaacactagatgaaatttcatcct |
5285254 |
T |
|
| Q |
204 |
tttacgttaaaattaaacaaattgaaaattgatacatgaaa------agaaaataattaagcatctcatatagctacactgcgcaaaacaaccgtttcaa |
297 |
Q |
| |
|
| || | |||||||||||||||||||||||||| |||||| | |||| ||||||||||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
5285253 |
t--acataaaaattaaacaaattgaaaattgataaatgaaagaaaagaaaaaaaaattaagcatctcatatggcaacactgcgcaaaacaacggtttcaa |
5285156 |
T |
|
| Q |
298 |
ttgtaagtcctggtccaaaaccaaataacacaccccattcaagtccttctccagttgtcttcaaaccgtctttagttgatttctttctcatttcatctaa |
397 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| || |||||||||||||||||||||||| || |
|
|
| T |
5285155 |
tggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttctcccgttgtcttcaatccgttttgagttgatttctttctcatttcatccaa |
5285056 |
T |
|
| Q |
398 |
gataaacaaaacacatgcacttgacatatttccatattcactgagcacttctct |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5285055 |
gataaacaaaacacatgcacttgacatatttccatattcactgagcacttctct |
5285002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 112 - 451
Target Start/End: Complemental strand, 5311428 - 5311091
Alignment:
| Q |
112 |
aaataaataactattgttaaaatataaagtgaatcacaagtgtattattt-aatatgatggtacatgttgaacacaagatgaaatttcatccttttacgt |
210 |
Q |
| |
|
||||| ||||| ||||||| ||||||||| |||||||| | | |||||| |||||||| ||||||||| ||||| |||||||||| ||||| | || | |
|
|
| T |
5311428 |
aaatatataaccattgttagaatataaaggtaatcacaattctcttattttaatatgatagtacatgttaaacactagatgaaattacatccat--acat |
5311331 |
T |
|
| Q |
211 |
taaaattaaacaaattgaaaattgatacatgaaaagaaaataattaagcatctcatatagctacactgcgcaaaacaaccgtttcaattgtaagtcctgg |
310 |
Q |
| |
|
||| |||||||||| |||| |||| ||||||| |||||| |||| |||||||||| | ||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
5311330 |
aaaagataaacaaattataaatcgataaatgaaaataaaata-ttaaacatctcatatggtcacactacgcaaaacaactgtttcaatggtaagtcctgg |
5311232 |
T |
|
| Q |
311 |
tccaaaaccaaataacacaccccattcaagtccttctccagttgtcttcaaaccgtctttagttgatttctttctcatttcatctaagataaacaaaaca |
410 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||| ||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5311231 |
tccaaaaccaaataatacaccccactcaagtccttctcccgttgtcttcaatccgttttgagttgatttctttctcatttcatctaagataaacaaaaca |
5311132 |
T |
|
| Q |
411 |
catgcacttgacatatttccatattcactgagcacttctct |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5311131 |
catgcacttgacatatttccatattcactgagcacttctct |
5311091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 247 - 451
Target Start/End: Complemental strand, 5316009 - 5315805
Alignment:
| Q |
247 |
aaaataattaagcatctcatatagctacactgcgcaaaacaaccgtttcaattgtaagtcctggtccaaaaccaaataacacaccccattcaagtccttc |
346 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5316009 |
aaaataaataagcatctcatatagccacgctgcgcaaaacaaccgtttcaatggtaagtcctggtccaaaaccaaataatacaccccattcaagtccttc |
5315910 |
T |
|
| Q |
347 |
tccagttgtcttcaaaccgtctttagttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcactgagcact |
446 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5315909 |
tcccgttgtcttcaatccgtctttagttgatttctttctcatttcatctaagataaacaaaacacacgcacttgacatatttccatattcactgagcact |
5315810 |
T |
|
| Q |
447 |
tctct |
451 |
Q |
| |
|
||||| |
|
|
| T |
5315809 |
tctct |
5315805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 239 - 451
Target Start/End: Original strand, 5288913 - 5289125
Alignment:
| Q |
239 |
atgaaaagaaaataattaagcatctcatatagctacactgcgcaaaacaaccgtttcaattgtaagtcctggtccaaaaccaaataacacaccccattca |
338 |
Q |
| |
|
||||||| ||||||||||| |||||||||| || ||||| || |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5288913 |
atgaaaataaaataattaaacatctcatatggccacactacgtaaaacaacagtttcaatggtaagtcctggtccaaaaccaaataagacaccccattca |
5289012 |
T |
|
| Q |
339 |
agtccttctccagttgtcttcaaaccgtctttagttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcac |
438 |
Q |
| |
|
||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289013 |
agtccttctccagttgtcttcaatccgtctatggttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcac |
5289112 |
T |
|
| Q |
439 |
tgagcacttctct |
451 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5289113 |
tgagcacttctct |
5289125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 233 - 451
Target Start/End: Original strand, 46706198 - 46706416
Alignment:
| Q |
233 |
tgatacatgaaaagaaaataattaagcatctcatatagctacactgcgcaaaacaaccgtttcaattgtaagtcctggtccaaaaccaaataacacaccc |
332 |
Q |
| |
|
||||| || |||| ||||||||||||||| ||||||||| |||||| |||||||||| ||||| || ||||||||||||||||| ||||||||||||||| |
|
|
| T |
46706198 |
tgataaataaaaataaaataattaagcatttcatatagcgacactgtgcaaaacaacagtttctatggtaagtcctggtccaaagccaaataacacaccc |
46706297 |
T |
|
| Q |
333 |
cattcaagtccttctccagttgtcttcaaaccgtctttagttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccat |
432 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46706298 |
cattcaagtccttctcctgttgtcttcagaccatcttgagttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccat |
46706397 |
T |
|
| Q |
433 |
attcactgagcacttctct |
451 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
46706398 |
attcactaagcacttctct |
46706416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 379 - 445
Target Start/End: Original strand, 32530364 - 32530430
Alignment:
| Q |
379 |
tctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcactgagcac |
445 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
32530364 |
tctttctcatttcatccaaaataaacaaaacacaagcactcgacatatttccatattcactaagcac |
32530430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 212 - 451
Target Start/End: Complemental strand, 1505910 - 1505671
Alignment:
| Q |
212 |
aaaattaaacaaattgaaaattgatacatgaaaagaaaataattaagcatctcatatagctacactgcgcaaaacaaccgtttcaattgtaagtcctggt |
311 |
Q |
| |
|
||||| || |||||| ||| ||||| ||||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||| ||| |
|
|
| T |
1505910 |
aaaatcaagcaaatttgaaagtgatatatgaaaataaaataattaagcatctcatatagcaacactacgcaaaacaacagtttcaatagtaagtcccggt |
1505811 |
T |
|
| Q |
312 |
ccaaaaccaaataacacaccccattcaagtccttctccagttgtcttcaaaccgtctttagttgatttctttctcatttcatctaagataaacaaaacac |
411 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||| || |||||||| || |||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1505810 |
ccaaagccaaataacacaccccattcatgtccttctccggtagtcttcaatccatcttgagctgatttctttctcatttcatctaagataaacaaaacac |
1505711 |
T |
|
| Q |
412 |
atgcacttgacatatttccatattcactgagcacttctct |
451 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1505710 |
atgcacttgacatatttccatattcactaagcacttctct |
1505671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 212 - 445
Target Start/End: Complemental strand, 1493102 - 1492868
Alignment:
| Q |
212 |
aaaattaaacaaattgaaaattgatacatgaaaagaaa-ataattaagcatctcatatagctacactgcgcaaaacaaccgtttcaattgtaagtcctgg |
310 |
Q |
| |
|
||||| || |||||| |||| ||||| ||| ||| ||| || ||||||||||| ||||||||||||||||||| ||||| || ||||| ||||||||||| |
|
|
| T |
1493102 |
aaaataaagcaaatttaaaagtgataaatggaaataaatatgattaagcatcttatatagctacactgcgcaagacaacagtctcaatggtaagtcctgg |
1493003 |
T |
|
| Q |
311 |
tccaaaaccaaataacacaccccattcaagtccttctccagttgtcttcaaaccgtctttagttgatttctttctcatttcatctaagataaacaaaaca |
410 |
Q |
| |
|
|||||| || |||| ||||||||||||| | |||||||| |||||||||||||| | || |||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
1493002 |
tccaaagccgaatagcacaccccattcatgcccttctccggttgtcttcaaaccattttgagttgatttctttctcatttcatccaagataaacaataca |
1492903 |
T |
|
| Q |
411 |
catgcacttgacatatttccatattcactgagcac |
445 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1492902 |
catgcacttgacatatttccatattcacttagcac |
1492868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 239 - 451
Target Start/End: Complemental strand, 1483099 - 1482887
Alignment:
| Q |
239 |
atgaaaagaaaataattaagcatctcatatagctacactgcgcaaaacaaccgtttcaattgtaagtcctggtccaaaaccaaataacacaccccattca |
338 |
Q |
| |
|
||||||| ||| ||||||||| | ||||||||| |||||| |||||||||| |||||||| |||||||| |||||||| || || ||||||||||| ||| |
|
|
| T |
1483099 |
atgaaaataaactaattaagcttatcatatagccacactgtgcaaaacaacggtttcaatggtaagtccaggtccaaagccgaacaacacaccccaatca |
1483000 |
T |
|
| Q |
339 |
agtccttctccagttgtcttcaaaccgtctttagttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcac |
438 |
Q |
| |
|
|| |||||||| || ||||| | || |||| || |||||||||| ||| ||||||||||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
1482999 |
agcccttctcctgtggtcttaagcccctcttgagaagatttctttcgcatctcatctaagataaacaatacacatgcacttgacatgttaccatattcac |
1482900 |
T |
|
| Q |
439 |
tgagcacttctct |
451 |
Q |
| |
|
| || |||||||| |
|
|
| T |
1482899 |
taagtacttctct |
1482887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 284 - 448
Target Start/End: Complemental strand, 1487531 - 1487367
Alignment:
| Q |
284 |
aacaaccgtttcaattgtaagtcctggtccaaaaccaaataacacaccccattcaagtccttctccagttgtcttcaaaccgtctttagttgatttcttt |
383 |
Q |
| |
|
|||||| |||||||| |||||||| |||||||| || || ||||| ||||||| |||||||||||| || |||| | || |||| || |||| ||||| |
|
|
| T |
1487531 |
aacaacagtttcaatggtaagtccaggtccaaagccgaacaacactccccatttaagtccttctcctgtggtctcaagtccctcttgagctgatctcttt |
1487432 |
T |
|
| Q |
384 |
ctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcactgagcacttc |
448 |
Q |
| |
|
||||||||||| || |||||||| ||||| ||||||||||| || ||||||||||| || ||||| |
|
|
| T |
1487431 |
ctcatttcatccaatataaacaatacacaagcacttgacatgttaccatattcactaagtacttc |
1487367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 247 - 448
Target Start/End: Complemental strand, 1500138 - 1499937
Alignment:
| Q |
247 |
aaaataattaagcatctcatatagctacactgcgcaaaacaaccgtttcaattgtaagtcctggtccaaaaccaaataacacaccccattcaagtccttc |
346 |
Q |
| |
|
|||| |||| ||||||| ||||| ||| ||| |||||||||| |||||||| |||||||| |||||||| | || || ||||||||||| ||||||| |
|
|
| T |
1500138 |
aaaaaaattgagcatcttatataactatactatgcaaaacaacagtttcaatggtaagtccaggtccaaagcttaacaatacaccccattcttgtccttc |
1500039 |
T |
|
| Q |
347 |
tccagttgtcttcaaaccgtctttagttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcactgagcact |
446 |
Q |
| |
|
|| || ||||| | | |||| ||| |||||| ||||||| |||| ||||| ||||| ||| ||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
1500038 |
acctgtggtcttaagtcgatcttgagtcgatttccttctcatctcattcaagatgaacaatacagatgcactagacatattaccatattcactaagcact |
1499939 |
T |
|
| Q |
447 |
tc |
448 |
Q |
| |
|
|| |
|
|
| T |
1499938 |
tc |
1499937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 330 - 439
Target Start/End: Complemental strand, 1509928 - 1509819
Alignment:
| Q |
330 |
ccccattcaagtccttctccagttgtcttcaaaccgtctttagttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttc |
429 |
Q |
| |
|
||||||||||||||||| ||| | ||||| | || |||| || ||||||||||||||| || |||||||| ||||| |||||||||||||||||||| | |
|
|
| T |
1509928 |
ccccattcaagtccttcaccaatggtcttaattccctcttgagctgatttctttctcatctcgtctaagatgaacaatacacatgcacttgacatattac |
1509829 |
T |
|
| Q |
430 |
catattcact |
439 |
Q |
| |
|
|||||||||| |
|
|
| T |
1509828 |
catattcact |
1509819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 284 - 448
Target Start/End: Complemental strand, 1478860 - 1478696
Alignment:
| Q |
284 |
aacaaccgtttcaattgtaagtcctggtccaaaaccaaataacacaccccattcaagtccttctccagttgtcttcaaaccgtctttagttgatttcttt |
383 |
Q |
| |
|
|||||| |||||||| || ||||| |||||||| ||||| ||||||||||| ||||| ||||| || || || || | || |||| || ||||||||| |
|
|
| T |
1478860 |
aacaactgtttcaatggtgagtccaggtccaaagccaaacaacacaccccagtcaaggccttcacctgtggttttaagtccctcttgagccgatttcttt |
1478761 |
T |
|
| Q |
384 |
ctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcactgagcacttc |
448 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||||| |||||||| || ||||||||||| || ||||| |
|
|
| T |
1478760 |
ctcatctcatccaagatgaacaatacacatgcgcttgacatgttaccatattcactaagtacttc |
1478696 |
T |
|
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Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 212 - 451
Target Start/End: Complemental strand, 44129507 - 44129268
Alignment:
| Q |
212 |
aaaattaaacaaattgaaaattgatacatgaaaagaaaataattaagcatctcatatagctacactgcgcaaaacaaccgtttcaattgtaagtcctggt |
311 |
Q |
| |
|
||||| || |||||| ||| |||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||| |||||||| ||||| |||||| |
|
|
| T |
44129507 |
aaaatcaagcaaatttgaaagtgattcatgaaaataaaataattaagcacctcatatagcgacactgcgcaaaacaacagtttcaatagtaagacctggt |
44129408 |
T |
|
| Q |
312 |
ccaaaaccaaataacacaccccattcaagtccttctccagttgtcttcaaaccgtctttagttgatttctttctcatttcatctaagataaacaaaacac |
411 |
Q |
| |
|
||||| |||||||| |||||||| |||||||||||||| || ||||||| || |||| || ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44129407 |
ccaaagccaaataaaacaccccactcaagtccttctcccgtggtcttcagtccatcttgagctgacttctttctcatttcatctaagataaacaaaacac |
44129308 |
T |
|
| Q |
412 |
atgcacttgacatatttccatattcactgagcacttctct |
451 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
44129307 |
aagcacttgacatatttccatattcactaagcacttctct |
44129268 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 233 - 451
Target Start/End: Complemental strand, 44133691 - 44133473
Alignment:
| Q |
233 |
tgatacatgaaaagaaaataattaagcatctcatatagctacactgcgcaaaacaaccgtttcaattgtaagtcctggtccaaaaccaaataacacaccc |
332 |
Q |
| |
|
||||||||||||| ||||||| |||||| |||||||||| | ||| ||||||||||| |||||||| ||||| || |||||||| |||||||| ||||| |
|
|
| T |
44133691 |
tgatacatgaaaataaaataaataagcacctcatatagcgatacttcgcaaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacacca |
44133592 |
T |
|
| Q |
333 |
cattcaagtccttctccagttgtcttcaaaccgtctttagttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccat |
432 |
Q |
| |
|
|||||||||||||||| || |||||||| || |||| || ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44133591 |
aattcaagtccttctcctgtggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccat |
44133492 |
T |
|
| Q |
433 |
attcactgagcacttctct |
451 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
44133491 |
attcactaagcacttctct |
44133473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 233 - 451
Target Start/End: Complemental strand, 44142113 - 44141895
Alignment:
| Q |
233 |
tgatacatgaaaagaaaataattaagcatctcatatagctacactgcgcaaaacaaccgtttcaattgtaagtcctggtccaaaaccaaataacacaccc |
332 |
Q |
| |
|
||||||| || || |||||||||||||| |||||||||| |||||||| |||||||| |||||||| ||||| || |||||||| |||||||| ||||| |
|
|
| T |
44142113 |
tgatacaagataataaaataattaagcacctcatatagcgacactgcgtaaaacaacagtttcaatggtaagacccggtccaaagccaaataaaacacca |
44142014 |
T |
|
| Q |
333 |
cattcaagtccttctccagttgtcttcaaaccgtctttagttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccat |
432 |
Q |
| |
|
| |||||||||||||| || |||||||| || |||| || ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44142013 |
aactcaagtccttctcccgtggtcttcaatccatcttgagctgacttctttctcatttcatctaagataaacaaaacacaggcacttgacatatttccat |
44141914 |
T |
|
| Q |
433 |
attcactgagcacttctct |
451 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
44141913 |
attcactaagcacttctct |
44141895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 256 - 444
Target Start/End: Original strand, 24163023 - 24163211
Alignment:
| Q |
256 |
aagcatctcatatagctacactgcgcaaaacaaccgtttcaattgtaagtcctggtccaaaaccaaataacacaccccattcaagtccttctccagttgt |
355 |
Q |
| |
|
|||||| ||||||||| |||||| | | ||||| ||||||||| ||||||||||| ||||| | || ||||||||||||||||| |||||||| || || |
|
|
| T |
24163023 |
aagcatatcatatagccacactgtggagaacaatcgtttcaatggtaagtcctggcccaaagcttaacaacacaccccattcaagcccttctcctgtggt |
24163122 |
T |
|
| Q |
356 |
cttcaaaccgtctttagttgatttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccatattcactgagca |
444 |
Q |
| |
|
||| | || |||| || ||||| |||||||| ||||||||||| || || ||||||||||||||||| || ||||||||||| |||| |
|
|
| T |
24163123 |
ctttagtccatcttgagccgatttgtttctcatctcatctaagatgaataatacacatgcacttgacatgttaccatattcactaagca |
24163211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 433
Target Start/End: Complemental strand, 35251578 - 35251523
Alignment:
| Q |
378 |
ttctttctcatttcatctaagataaacaaaacacatgcacttgacatatttccata |
433 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||| ||||||||||| || ||||| |
|
|
| T |
35251578 |
ttctttctcatttcatctaaaatgaacaacacacaagcacttgacatgttcccata |
35251523 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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