View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16518_low_2 (Length: 252)
Name: NF16518_low_2
Description: NF16518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16518_low_2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 46925680 - 46925445
Alignment:
| Q |
17 |
ttatctttcttattttattgttgaagaatgaagttgattatcaagttttgagtcacggaggagctaggaagatcatgatgatattgatggaaacatgtgt |
116 |
Q |
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| T |
46925680 |
ttatctttcttattttattgttgaagaatgaagttgattatcaagttttgagtcacggaggagctaggaagatcatgatgatattgatggaaacatgtgt |
46925581 |
T |
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| Q |
117 |
ttttgcgtgcgtgtgtgattctgtgtacatataacttagtgccaatactatctttgttcacaatctattgatgtaggtggattttggtagtactaagatt |
216 |
Q |
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| T |
46925580 |
ttttgcgtgcgtgtgtgattctgtgtacatataacttagtgccaatattatctttgttcacaatctattgatgtaggtggattttggtagtactaagatt |
46925481 |
T |
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| Q |
217 |
aaagatcaacagtaaattaccaaactataaatgttt |
252 |
Q |
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| T |
46925480 |
aaagatcaaaattaaattaccaaactttaaatgttt |
46925445 |
T |
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