View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16518_low_3 (Length: 226)

Name: NF16518_low_3
Description: NF16518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16518_low_3
NF16518_low_3
[»] chr3 (4 HSPs)
chr3 (102-226)||(38522095-38522219)
chr3 (176-225)||(54362055-54362104)
chr3 (176-224)||(37311668-37311716)
chr3 (176-226)||(9762744-9762794)
[»] chr2 (3 HSPs)
chr2 (176-224)||(929050-929098)
chr2 (176-224)||(2080598-2080646)
chr2 (174-224)||(37624306-37624356)
[»] chr4 (3 HSPs)
chr4 (177-219)||(3527905-3527947)
chr4 (176-225)||(13529373-13529422)
chr4 (176-224)||(13902038-13902086)
[»] chr7 (3 HSPs)
chr7 (176-225)||(9658349-9658398)
chr7 (176-226)||(29724360-29724410)
chr7 (174-224)||(42121342-42121392)
[»] chr5 (2 HSPs)
chr5 (172-225)||(36187536-36187589)
chr5 (174-226)||(30784305-30784357)
[»] chr8 (2 HSPs)
chr8 (176-217)||(14441473-14441514)
chr8 (175-219)||(42486552-42486596)
[»] chr6 (1 HSPs)
chr6 (176-217)||(7509734-7509775)
[»] chr1 (1 HSPs)
chr1 (176-225)||(29867023-29867072)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 102 - 226
Target Start/End: Complemental strand, 38522219 - 38522095
Alignment:
Q  102 gtttatggaagctacgttcatccacattccacattatcacctagctcaaaagtataaatatannnnnnnnaattaaaagtataaatattttgttgtaatc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        | | ||||||||||||||||||||||||||    
T  38522219 gtttatggaagctacgttcatccacattccacattatcacctagctcaaaagtataaatatatttttttaattaaaaagtataaatattttgttgtaatc 38522120  T
Q  202 gatgcatttgaatttaatctttttt 226  Q
    |||||||||||||||||||||||||    
T  38522119 gatgcatttgaatttaatctttttt 38522095  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 54362055 - 54362104
Alignment:
Q  176 aaaagtataaatattttgttgtaatcgatgcatttgaatttaatcttttt 225  Q
    ||||||| |||||||| ||||||||| ||||||||||||||||| |||||    
T  54362055 aaaagtagaaatatttggttgtaatcaatgcatttgaatttaattttttt 54362104  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 37311668 - 37311716
Alignment:
Q  176 aaaagtataaatattttgttgtaatcgatgcatttgaatttaatctttt 224  Q
    ||||||||||||| |||||||||||  ||||||||||||||||| ||||    
T  37311668 aaaagtataaataatttgttgtaattaatgcatttgaatttaatttttt 37311716  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 9762794 - 9762744
Alignment:
Q  176 aaaagtataaatattttgttgtaatcgatgcatttgaatttaatctttttt 226  Q
    ||||||| ||||||||| |||||||  ||||||||||||||||| ||||||    
T  9762794 aaaagtagaaatattttattgtaattaatgcatttgaatttaatttttttt 9762744  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 929050 - 929098
Alignment:
Q  176 aaaagtataaatattttgttgtaatcgatgcatttgaatttaatctttt 224  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| ||||    
T  929050 aaaagtagaaatattttgttgtaatcaatgcatttgaatttaatttttt 929098  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 2080646 - 2080598
Alignment:
Q  176 aaaagtataaatattttgttgtaatcgatgcatttgaatttaatctttt 224  Q
    ||||||||||||||| | |||||||| ||||||||||||||||| ||||    
T  2080646 aaaagtataaatattgttttgtaatcaatgcatttgaatttaatatttt 2080598  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 37624306 - 37624356
Alignment:
Q  174 ttaaaagtataaatattttgttgtaatcgatgcatttgaatttaatctttt 224  Q
    ||||||||||||||||||| || ||||| ||| ||||||||||||| ||||    
T  37624306 ttaaaagtataaatattttattataatcaatgtatttgaatttaatttttt 37624356  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 3527905 - 3527947
Alignment:
Q  177 aaagtataaatattttgttgtaatcgatgcatttgaatttaat 219  Q
    |||||| |||||||||||||||||| |||||||||||||||||    
T  3527905 aaagtagaaatattttgttgtaatcaatgcatttgaatttaat 3527947  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 13529373 - 13529422
Alignment:
Q  176 aaaagtataaatattttgttgtaatcgatgcatttgaatttaatcttttt 225  Q
    |||||||||||| ||||||||||||  ||||||||||||||||| |||||    
T  13529373 aaaagtataaattttttgttgtaattaatgcatttgaatttaattttttt 13529422  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 13902038 - 13902086
Alignment:
Q  176 aaaagtataaatattttgttgtaatcgatgcatttgaatttaatctttt 224  Q
    ||||||| |||||||| ||||||||| ||||||||||||||||| ||||    
T  13902038 aaaagtagaaatatttggttgtaatcaatgcatttgaatttaatttttt 13902086  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 9658349 - 9658398
Alignment:
Q  176 aaaagtataaatattttgttgtaatcgatgcatttgaatttaatcttttt 225  Q
    |||||||||||| ||||||||||||  ||||||||||||||||| |||||    
T  9658349 aaaagtataaattttttgttgtaattaatgcatttgaatttaattttttt 9658398  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 29724410 - 29724360
Alignment:
Q  176 aaaagtataaatattttgttgtaatcgatgcatttgaatttaatctttttt 226  Q
    ||||||| ||||| |||||||||||  ||||||||||||||||| ||||||    
T  29724410 aaaagtagaaataatttgttgtaataaatgcatttgaatttaatttttttt 29724360  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 42121342 - 42121392
Alignment:
Q  174 ttaaaagtataaatattttgttgtaatcgatgcatttgaatttaatctttt 224  Q
    |||||| |||||||| |||||||||||  ||||||||||||||||| ||||    
T  42121342 ttaaaaatataaataatttgttgtaattaatgcatttgaatttaatttttt 42121392  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 36187536 - 36187589
Alignment:
Q  172 aattaaaagtataaatattttgttgtaatcgatgcatttgaatttaatcttttt 225  Q
    ||||||||||| |||||||||||||||||  ||||||||| ||||||| |||||    
T  36187536 aattaaaagtaaaaatattttgttgtaattaatgcatttgtatttaattttttt 36187589  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 30784357 - 30784305
Alignment:
Q  174 ttaaaagtataaatattttgttgtaatcgatgcatttgaatttaatctttttt 226  Q
    ||||||||| |||||||||||||||||  ||| ||||||||||||| ||||||    
T  30784357 ttaaaagtaaaaatattttgttgtaattaatgtatttgaatttaatttttttt 30784305  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 14441473 - 14441514
Alignment:
Q  176 aaaagtataaatattttgttgtaatcgatgcatttgaattta 217  Q
    ||||||||||||||||||| |||||  |||||||||||||||    
T  14441473 aaaagtataaatattttgtagtaattaatgcatttgaattta 14441514  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 42486552 - 42486596
Alignment:
Q  175 taaaagtataaatattttgttgtaatcgatgcatttgaatttaat 219  Q
    |||||||| |||| ||||||||||||  |||||||||||||||||    
T  42486552 taaaagtagaaatgttttgttgtaattaatgcatttgaatttaat 42486596  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 7509775 - 7509734
Alignment:
Q  176 aaaagtataaatattttgttgtaatcgatgcatttgaattta 217  Q
    ||||||| ||||||| |||||||||| |||||||||||||||    
T  7509775 aaaagtagaaatattgtgttgtaatcaatgcatttgaattta 7509734  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 29867072 - 29867023
Alignment:
Q  176 aaaagtataaatattttgttgtaatcgatgcatttgaatttaatcttttt 225  Q
    ||||||| |||||||||||||||||  || |||||||||||||| |||||    
T  29867072 aaaagtagaaatattttgttgtaataaatacatttgaatttaatattttt 29867023  T

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