View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16519_high_1 (Length: 602)
Name: NF16519_high_1
Description: NF16519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16519_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 142 - 584
Target Start/End: Original strand, 26578826 - 26579268
Alignment:
| Q |
142 |
tgtctatcattccaagtgtgttcggaaccggacgaagaagcaacatcttcgacccattctctctagacttatgggatccattccaaaacttccctaccac |
241 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26578826 |
tgtctatcattccaagtgtcttcggaaccggacgaagaagcaacatcttcgacccattctctctagacttatgggatccattccaaaacttccctaccac |
26578925 |
T |
|
| Q |
242 |
caacgaaacatcatcgttcgctaatgcgcgcattgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaa |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26578926 |
caacgaaacatcatcgttcgctaatgcgcgcactgactggaaggaaacaccggaagcacacatcttcaaagccgatcttcccggcgtgaagaaggaggaa |
26579025 |
T |
|
| Q |
342 |
gtgaaggttgagattgaagatgatcatgttttgaagataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaa |
441 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26579026 |
gtgaaggttgagattgaagaggatcgtgttttgaagataagtggagagaggaaaattgagaaggaagacaagaatgatacctggcatcgcgttgaacgaa |
26579125 |
T |
|
| Q |
442 |
gccagggaagttttctccggcggtttaggttgccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcc |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26579126 |
gccagggaagttttctccggcggtttaggttgccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcc |
26579225 |
T |
|
| Q |
542 |
taaggtggaggttaagaagcctgatgtgaaacctgttcagatt |
584 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
26579226 |
taaggtggaggttaagaagcctgatgtgaagcctgttcagatt |
26579268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 276 - 546
Target Start/End: Original strand, 34918961 - 34919231
Alignment:
| Q |
276 |
gactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttttga |
375 |
Q |
| |
|
|||||||| ||||||| ||||| ||||| |||| | |||||||| || ||||||| || |||||||| ||||| || ||||||| |||| ||| |
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| T |
34918961 |
gactggaaagaaacacaagaagctcacgtgttcagtgtagatcttcctggtttgaagaaagaagaagtgaaagttgaaatagaagatggaaatgtgttgc |
34919060 |
T |
|
| Q |
376 |
agataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaagc-cagggaagttttctccggcggtttaggttgc |
474 |
Q |
| |
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|||||||||| ||||| || | ||| ||||||| ||| | |||| |||||||| ||||| |||| | ||||||||| | || |||||||||||| |
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| T |
34919061 |
agataagtggtgagagaaacaaagagcaggaagagaaggatgataagtggcatcgtgttgagagaagttctgggaagttta-tgaggaggtttaggttgc |
34919159 |
T |
|
| Q |
475 |
cggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcctaagg |
546 |
Q |
| |
|
| ||||||| ||| ||||| |||| |||||||| ||||||||||| || |||||||||| ||||||||||| |
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|
| T |
34919160 |
ctgagaatgttaaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaagg |
34919231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 26578683 - 26578746
Alignment:
| Q |
1 |
agtgaccaaatcactcccatcgccttctatataaagctctcacacacaccc--catttcctcat |
62 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| |
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|
| T |
26578683 |
agtgaccaaatcactcccatcgccctctatataaagctctcacacacacacaccatttcctcat |
26578746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 273 - 568
Target Start/End: Complemental strand, 36296773 - 36296478
Alignment:
| Q |
273 |
attgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttt |
372 |
Q |
| |
|
||||| |||||||| || || ||||||||||| || ||||| |||||||| || |||||||||| |||||||||||||| ||||||||||| ||| |
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|
| T |
36296773 |
attgattggaaggagaccccagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttc |
36296674 |
T |
|
| Q |
373 |
tgaagataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaagccagggaagttttctccggcggtttaggtt |
472 |
Q |
| |
|
| |||| |||||||||||||| ||||||| |||||||||||| | ||||||||||| || || ||| |||| ||| | || |||| || || |
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|
| T |
36296673 |
ttcagattagtggagagaggaacgttgagaaagaagacaagaacaaccaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagatt |
36296574 |
T |
|
| Q |
473 |
gccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcctaaggtggaggttaagaagcctgatgt |
568 |
Q |
| |
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||| || ||||| ||| ||||| |||||||||||| |||||||||||||| || ||||| | |||||| || | || |||||||| |||||||| |
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| T |
36296573 |
gcccgaaaatgccaagatggatcaggtgaaagctgcaatggagaatggtgttctcactgtaactgttccaaaagaagaagttaagaaacctgatgt |
36296478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 273 - 568
Target Start/End: Complemental strand, 35073000 - 35072705
Alignment:
| Q |
273 |
attgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttt |
372 |
Q |
| |
|
||||| |||||||| || || ||||| || || ||||| || |||||||| || ||||||||||||||||||||||||| |||||||||||| ||| |
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|
| T |
35073000 |
attgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttc |
35072901 |
T |
|
| Q |
373 |
tgaagataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaagccagggaagttttctccggcggtttaggtt |
472 |
Q |
| |
|
| ||||||| || |||||||| ||||| || ||||| ||||| ||| |||||||| || || || ||| |||| || | || ||||||| | |
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|
| T |
35072900 |
ttcagataagcggtgagaggaacattgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagata |
35072801 |
T |
|
| Q |
473 |
gccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcctaaggtggaggttaagaagcctgatgt |
568 |
Q |
| |
|
|| |||||||| || ||||| | |||||||||| |||||||||||||| || ||||||| |||||| || | || |||||||| |||||||| |
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|
| T |
35072800 |
accagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgt |
35072705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 279 - 419
Target Start/End: Original strand, 35097688 - 35097828
Alignment:
| Q |
279 |
tggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttttgaaga |
378 |
Q |
| |
|
|||||||| || || |||||||| || ||| | || |||||||| || |||||||||| |||||||||||||| ||||||| |||| ||| | ||| |
|
|
| T |
35097688 |
tggaaggagaccccagaagcacatgtgttcgaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaaggtgatagggttcttcaga |
35097787 |
T |
|
| Q |
379 |
taagtggagagaggaaaattgagaaggaagacaagaacgat |
419 |
Q |
| |
|
|||| ||||||||||| ||||||| ||||| ||||||||| |
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|
| T |
35097788 |
taagcggagagaggaatgttgagaaagaagataagaacgat |
35097828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 273 - 365
Target Start/End: Original strand, 35106860 - 35106952
Alignment:
| Q |
273 |
attgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgat |
365 |
Q |
| |
|
||||| |||||||| || || ||||| || || ||||| || |||||||| || ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35106860 |
attgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgat |
35106952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 36936064 - 36936005
Alignment:
| Q |
306 |
ttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgat |
365 |
Q |
| |
|
||||| || |||||||| || ||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
36936064 |
ttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgat |
36936005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 36940772 - 36940703
Alignment:
| Q |
296 |
agcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgat |
365 |
Q |
| |
|
||||||||| ||||| || ||| |||| || ||||||||||||||| ||| || ||||||||||||||| |
|
|
| T |
36940772 |
agcacacgtgttcaatgctgattttccaggaatgaagaaggaggaagcgaaagtagagattgaagatgat |
36940703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 419
Target Start/End: Original strand, 35098037 - 35098117
Alignment:
| Q |
339 |
gaagtgaaggttgagattgaagatgatcatgttttgaagataagtggagagaggaaaattgagaaggaagacaagaacgat |
419 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||| | ||||||| ||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
35098037 |
gaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaagataagaacgat |
35098117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 273 - 568
Target Start/End: Complemental strand, 24014499 - 24014204
Alignment:
| Q |
273 |
attgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttt |
372 |
Q |
| |
|
||||| |||||||| || || |||||||| || ||||| || |||||||| || ||||||||||||||||||||||||| ||||||| |||| ||| |
|
|
| T |
24014499 |
attgattggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaaggtgatagggttc |
24014400 |
T |
|
| Q |
373 |
tgaagataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaagccagggaagttttctccggcggtttaggtt |
472 |
Q |
| |
|
| ||||||| ||||||||||| ||||||| ||||| ||||||||| |||||||| || || || ||| |||| || | || | || ||||| |
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|
| T |
24014399 |
ttcagataagcggagagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgcagcagcggaaagttcatgaggagattcaggtt |
24014300 |
T |
|
| Q |
473 |
gccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcctaaggtggaggttaagaagcctgatgt |
568 |
Q |
| |
|
||| || ||||| || ||||| | |||||||||| |||||||||||||| || ||||||| |||||| || | || |||||||| |||||||| |
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|
| T |
24014299 |
gcccgaaaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgt |
24014204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 279 - 365
Target Start/End: Complemental strand, 24041050 - 24040964
Alignment:
| Q |
279 |
tggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgat |
365 |
Q |
| |
|
|||||||| || || |||||||| || ||||| || |||||||| || |||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
24041050 |
tggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgat |
24040964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 276 - 419
Target Start/End: Original strand, 3123076 - 3123219
Alignment:
| Q |
276 |
gactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttttga |
375 |
Q |
| |
|
||||| |||||||| | |||||||| || |||||||| |||||||| || |||||||||| || ||||||||||| |||||||||||| | ||| | |
|
|
| T |
3123076 |
gactgaaaggaaactctagaagcacatgtgttcaaagctgatcttccagggttgaagaaggaagaggtgaaggttgaaattgaagatgataaggttcttc |
3123175 |
T |
|
| Q |
376 |
agataagtggagagaggaaaattgagaaggaagacaagaacgat |
419 |
Q |
| |
|
||||||| ||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
3123176 |
agataagcggagaaaggaccgttgagaaagaagacaagaacgat |
3123219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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