View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16519_high_4 (Length: 335)
Name: NF16519_high_4
Description: NF16519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16519_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 2 - 335
Target Start/End: Original strand, 52589704 - 52590037
Alignment:
| Q |
2 |
catcaaggaggtttcgcccaaaaaatatgcatcaaagaggttaaacatgtgttatcctccgttgccaaattgcatctaatgaagttattattgagcaaag |
101 |
Q |
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| T |
52589704 |
catcaaggaggttttgcccaaaaaatatgcatcaaagaggttaaacatgtgttatcctccgttgccaaattgcatctaatgaagttattattgagcaaag |
52589803 |
T |
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| Q |
102 |
gtgtgcacatggaccacacgacatggcatgtcgtgaatttaattaagagtgtagattcaaatcgtacttggcactaccttttatttacacacaaaatttc |
201 |
Q |
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| T |
52589804 |
gtgtgcacatggaccacacgacatggcatgtcgtgaatttaattaagagtgtagattcaaatcgtacttggcactaccttttatttacacacaaaatttc |
52589903 |
T |
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| Q |
202 |
ctattcaacatcaatgcattgcaaaaaattgcctgcggataaaatagaaccaatcatctgtaatattattattacaataagtaaatgaatatatctaaca |
301 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52589904 |
ttattcaacatcaatgcattgcaaaaaattgcctgcagataaaatagaaccaatcatctgtaatattattattacaataagtaaatgaatatatctaaca |
52590003 |
T |
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| Q |
302 |
catatatatacctatctgtatattttgtacgttt |
335 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
52590004 |
catatatatacctatctgtatattttgtacgttt |
52590037 |
T |
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