View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16519_low_1 (Length: 602)

Name: NF16519_low_1
Description: NF16519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16519_low_1
NF16519_low_1
[»] chr5 (3 HSPs)
chr5 (142-584)||(26578826-26579268)
chr5 (276-546)||(34918961-34919231)
chr5 (1-62)||(26578683-26578746)
[»] chr4 (7 HSPs)
chr4 (273-568)||(36296478-36296773)
chr4 (273-568)||(35072705-35073000)
chr4 (279-419)||(35097688-35097828)
chr4 (273-365)||(35106860-35106952)
chr4 (306-365)||(36936005-36936064)
chr4 (296-365)||(36940703-36940772)
chr4 (339-419)||(35098037-35098117)
[»] chr6 (2 HSPs)
chr6 (273-568)||(24014204-24014499)
chr6 (279-365)||(24040964-24041050)
[»] chr1 (1 HSPs)
chr1 (276-419)||(3123076-3123219)


Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 142 - 584
Target Start/End: Original strand, 26578826 - 26579268
Alignment:
Q  142 tgtctatcattccaagtgtgttcggaaccggacgaagaagcaacatcttcgacccattctctctagacttatgggatccattccaaaacttccctaccac 241  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26578826 tgtctatcattccaagtgtcttcggaaccggacgaagaagcaacatcttcgacccattctctctagacttatgggatccattccaaaacttccctaccac 26578925  T
Q  242 caacgaaacatcatcgttcgctaatgcgcgcattgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaa 341  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26578926 caacgaaacatcatcgttcgctaatgcgcgcactgactggaaggaaacaccggaagcacacatcttcaaagccgatcttcccggcgtgaagaaggaggaa 26579025  T
Q  342 gtgaaggttgagattgaagatgatcatgttttgaagataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaa 441  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26579026 gtgaaggttgagattgaagaggatcgtgttttgaagataagtggagagaggaaaattgagaaggaagacaagaatgatacctggcatcgcgttgaacgaa 26579125  T
Q  442 gccagggaagttttctccggcggtttaggttgccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcc 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26579126 gccagggaagttttctccggcggtttaggttgccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcc 26579225  T
Q  542 taaggtggaggttaagaagcctgatgtgaaacctgttcagatt 584  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  26579226 taaggtggaggttaagaagcctgatgtgaagcctgttcagatt 26579268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 276 - 546
Target Start/End: Original strand, 34918961 - 34919231
Alignment:
Q  276 gactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttttga 375  Q
    |||||||| |||||||  ||||| ||||| ||||  |  |||||||| ||  ||||||| || |||||||| ||||| || |||||||   |||| |||     
T  34918961 gactggaaagaaacacaagaagctcacgtgttcagtgtagatcttcctggtttgaagaaagaagaagtgaaagttgaaatagaagatggaaatgtgttgc 34919060  T
Q  376 agataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaagc-cagggaagttttctccggcggtttaggttgc 474  Q
    |||||||||| ||||| || |  ||| ||||||| ||| | ||||  |||||||| |||||  ||||  | |||||||||  |  || ||||||||||||    
T  34919061 agataagtggtgagagaaacaaagagcaggaagagaaggatgataagtggcatcgtgttgagagaagttctgggaagttta-tgaggaggtttaggttgc 34919159  T
Q  475 cggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcctaagg 546  Q
    | ||||||| |||  ||||| |||| |||||||| ||||||||||| || |||||||||| |||||||||||    
T  34919160 ctgagaatgttaaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaagg 34919231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 26578683 - 26578746
Alignment:
Q  1 agtgaccaaatcactcccatcgccttctatataaagctctcacacacaccc--catttcctcat 62  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |  |||||||||||    
T  26578683 agtgaccaaatcactcccatcgccctctatataaagctctcacacacacacaccatttcctcat 26578746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 273 - 568
Target Start/End: Complemental strand, 36296773 - 36296478
Alignment:
Q  273 attgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttt 372  Q
    ||||| |||||||| || || ||||||||||| || ||||| |||||||| ||  |||||||||| |||||||||||||| |||||||||||    |||     
T  36296773 attgattggaaggagaccccagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttc 36296674  T
Q  373 tgaagataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaagccagggaagttttctccggcggtttaggtt 472  Q
    |  |||| ||||||||||||||  ||||||| |||||||||||| |    ||||||||||| || || |||   ||||  ||| |  || |||| || ||    
T  36296673 ttcagattagtggagagaggaacgttgagaaagaagacaagaacaaccaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagatt 36296574  T
Q  473 gccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcctaaggtggaggttaagaagcctgatgt 568  Q
    ||| || ||||| ||| ||||| ||||||||||||  |||||||||||||| || ||||| | |||||| || |  || |||||||| ||||||||    
T  36296573 gcccgaaaatgccaagatggatcaggtgaaagctgcaatggagaatggtgttctcactgtaactgttccaaaagaagaagttaagaaacctgatgt 36296478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 273 - 568
Target Start/End: Complemental strand, 35073000 - 35072705
Alignment:
Q  273 attgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttt 372  Q
    ||||| |||||||| || || ||||| || || ||||| || |||||||| ||  ||||||||||||||||||||||||| ||||||||||||   |||     
T  35073000 attgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttc 35072901  T
Q  373 tgaagataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaagccagggaagttttctccggcggtttaggtt 472  Q
    |  ||||||| || |||||||| ||||| || ||||| ||||| |||   |||||||| || || || |||   ||||  ||  |  || ||||||| |     
T  35072900 ttcagataagcggtgagaggaacattgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagata 35072801  T
Q  473 gccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcctaaggtggaggttaagaagcctgatgt 568  Q
     || |||||||| ||  ||||| | ||||||||||  |||||||||||||| || ||||||| |||||| || |  || |||||||| ||||||||    
T  35072800 accagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgt 35072705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 279 - 419
Target Start/End: Original strand, 35097688 - 35097828
Alignment:
Q  279 tggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttttgaaga 378  Q
    |||||||| || || |||||||| || ||| | || |||||||| ||  |||||||||| |||||||||||||| ||||||| ||||   ||| |  |||    
T  35097688 tggaaggagaccccagaagcacatgtgttcgaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaaggtgatagggttcttcaga 35097787  T
Q  379 taagtggagagaggaaaattgagaaggaagacaagaacgat 419  Q
    |||| |||||||||||  ||||||| ||||| |||||||||    
T  35097788 taagcggagagaggaatgttgagaaagaagataagaacgat 35097828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 273 - 365
Target Start/End: Original strand, 35106860 - 35106952
Alignment:
Q  273 attgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgat 365  Q
    ||||| |||||||| || || ||||| || || ||||| || |||||||| ||  ||||||||||||||||||||||||| ||||||||||||    
T  35106860 attgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgat 35106952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 36936064 - 36936005
Alignment:
Q  306 ttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgat 365  Q
    ||||| || |||||||| ||  ||||||||||||||||||| || |||||||||||||||    
T  36936064 ttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgat 36936005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 36940772 - 36940703
Alignment:
Q  296 agcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgat 365  Q
    ||||||||| ||||| || ||| |||| ||  ||||||||||||||| ||| || |||||||||||||||    
T  36940772 agcacacgtgttcaatgctgattttccaggaatgaagaaggaggaagcgaaagtagagattgaagatgat 36940703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 339 - 419
Target Start/End: Original strand, 35098037 - 35098117
Alignment:
Q  339 gaagtgaaggttgagattgaagatgatcatgttttgaagataagtggagagaggaaaattgagaaggaagacaagaacgat 419  Q
    |||||||||||||| ||||||| ||||   ||| |  ||||||| |||||||||||  ||||||| ||||| |||||||||    
T  35098037 gaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaagataagaacgat 35098117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 273 - 568
Target Start/End: Complemental strand, 24014499 - 24014204
Alignment:
Q  273 attgactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttt 372  Q
    ||||| |||||||| || || |||||||| || ||||| || |||||||| ||  ||||||||||||||||||||||||| ||||||| ||||   |||     
T  24014499 attgattggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaaggtgatagggttc 24014400  T
Q  373 tgaagataagtggagagaggaaaattgagaaggaagacaagaacgatacctggcatcgcgttgaacgaagccagggaagttttctccggcggtttaggtt 472  Q
    |  ||||||| |||||||||||  ||||||| ||||| |||||||||   |||||||| || || || |||   ||||  ||  |  || | || |||||    
T  24014399 ttcagataagcggagagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgcagcagcggaaagttcatgaggagattcaggtt 24014300  T
Q  473 gccggagaatgctaaggtggatgaggtgaaagctgggatggagaatggtgtgcttactgttagtgttcctaaggtggaggttaagaagcctgatgt 568  Q
    ||| || ||||| ||  ||||| | ||||||||||  |||||||||||||| || ||||||| |||||| || |  || |||||||| ||||||||    
T  24014299 gcccgaaaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgt 24014204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 279 - 365
Target Start/End: Complemental strand, 24041050 - 24040964
Alignment:
Q  279 tggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgat 365  Q
    |||||||| || || |||||||| || ||||| || |||||||| ||  |||||||||| |||||||||||||| ||||||||||||    
T  24041050 tggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgat 24040964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 276 - 419
Target Start/End: Original strand, 3123076 - 3123219
Alignment:
Q  276 gactggaaggaaacaccggaagcacacgtcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagatgatcatgttttga 375  Q
    ||||| |||||||| |  |||||||| || |||||||| |||||||| ||  |||||||||| || ||||||||||| |||||||||||| | ||| |      
T  3123076 gactgaaaggaaactctagaagcacatgtgttcaaagctgatcttccagggttgaagaaggaagaggtgaaggttgaaattgaagatgataaggttcttc 3123175  T
Q  376 agataagtggagagaggaaaattgagaaggaagacaagaacgat 419  Q
    ||||||| ||||| ||||   ||||||| |||||||||||||||    
T  3123176 agataagcggagaaaggaccgttgagaaagaagacaagaacgat 3123219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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