View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16519_low_2 (Length: 551)

Name: NF16519_low_2
Description: NF16519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16519_low_2
NF16519_low_2
[»] chr2 (1 HSPs)
chr2 (6-291)||(33347576-33347861)
[»] chr6 (1 HSPs)
chr6 (14-291)||(19111951-19112228)
[»] chr8 (2 HSPs)
chr8 (6-291)||(26383521-26383806)
chr8 (11-62)||(39530084-39530135)
[»] scaffold0354 (1 HSPs)
scaffold0354 (178-291)||(30-143)
[»] chr1 (2 HSPs)
chr1 (474-540)||(20221878-20221943)
chr1 (77-194)||(23266603-23266720)
[»] chr4 (2 HSPs)
chr4 (89-194)||(48211202-48211307)
chr4 (89-193)||(46390140-46390244)
[»] scaffold0068 (1 HSPs)
scaffold0068 (89-194)||(11762-11867)
[»] chr5 (1 HSPs)
chr5 (89-194)||(21702043-21702148)
[»] chr7 (1 HSPs)
chr7 (78-116)||(5613176-5613214)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 6 - 291
Target Start/End: Complemental strand, 33347861 - 33347576
Alignment:
Q  6 gatggacatcatcatccaatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttactt 105  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  33347861 gatgcacatcataatccaatttatccatctatcagaaaaacccatttttatcataacctttttcagataactccaatcaattatgtcatacgctttactt 33347762  T
Q  106 atatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggacagatc 205  Q
    || || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33347761 atgtcaagcttaagagcaacatctcccaatgtacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggatagatc 33347662  T
Q  206 gacctgcaacaaatgcagattgactatcagaaatgcacttatttaaaacaactttgagtcgatttactaacactttcgctaccacc 291  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33347661 gacccggaacaaatgcagattgactatcagaaatgcacttatttaaaacaactttgagtcgatttgctaacactttcgctaccacc 33347576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 19111951 - 19112228
Alignment:
Q  14 tcatcatccaatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttacttatatccag 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| ||    
T  19111951 tcataatccaatttatccatctatcagaaaaacccatttttatcataacccttttcaaataactccaatcaattatgtcatacgttttacttatatcaag 19112050  T
Q  114 cttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggacagatcgacctgca 213  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | |    
T  19112051 cttaagagcaacatctcccaatatacctttgactttcgactccatataatgaatgatctctatggcttccatagcattatctaggatagatcgacccgga 19112150  T
Q  214 acaaatgcagattgactatcagaaatgcacttatttaaaacaactttgagtcgatttactaacactttcgctaccacc 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19112151 acaaatgcagattgactatcagaaatgcacttatttaaaacaactttgagtcgatttgctaacactttcgctaccacc 19112228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 6 - 291
Target Start/End: Original strand, 26383521 - 26383806
Alignment:
Q  6 gatggacatcatcatccaatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattttgtcatacgctttactt 105  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26383521 gatgcacatcataatccaatttatccatctatcagaaaaacccatttttatcataacccttttcagataactccaatcaattctgtcatacgctttactt 26383620  T
Q  106 atatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagcattatctaggacagatc 205  Q
    ||||| |||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26383621 atatcaagcttaagagaaacatctcccaatgtaactttgagtttcgacttcatataatgaatgatctctatggctgccatagcattatctaggatagatc 26383720  T
Q  206 gacctgcaacaaatgcagattgactatcagaaatgcacttatttaaaacaactttgagtcgatttactaacactttcgctaccacc 291  Q
    |||| | |||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  26383721 gacccggaacaaatgcaaattgactattagaaatgcacttatttaaaacaactttgagttgatttgctaacactttcgctaccacc 26383806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 39530135 - 39530084
Alignment:
Q  11 acatcatcatccaatttatccatctatcagaaaaacccatttttatcataac 62  Q
    ||||||| ||||||| ||||||||||| ||| ||||||||||| ||||||||    
T  39530135 acatcatgatccaatctatccatctattagagaaacccattttaatcataac 39530084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 178 - 291
Target Start/End: Original strand, 30 - 143
Alignment:
Q  178 gctgccatagcattatctaggacagatcgacctgcaacaaatgcagattgactatcagaaatgcacttatttaaaacaactttgagtcgatttactaaca 277  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||| |||||  ||||||||||||||||||||||||| ||||||||||||| ||||||    
T  30 gctgccatagcattatctaggatagatcgacccggaacaaatgcaggttgacagtcagaaatgcacttatttaaaacaaatttgagtcgatttgctaaca 129  T
Q  278 ctttcgctaccacc 291  Q
    ||||||||||||||    
T  130 ctttcgctaccacc 143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 474 - 540
Target Start/End: Original strand, 20221878 - 20221943
Alignment:
Q  474 gattgcctatgcttcacctttaatttccaaatctgttcaatccttcctttgcttcttttattctgct 540  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  20221878 gattgcctatgtttcacctttaatttccaa-tctgttcaatccttcctttgcttcttttattctgct 20221943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 23266603 - 23266720
Alignment:
Q  77 tccaatcaattttgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctat 176  Q
    |||| |||||||||||||| ||||| || ||||| || || ||||| || ||||| |   || | ||||||||||||||||||| ||| || || |||||    
T  23266603 tccactcaattttgtcatatgctttgctaatatcaagtttcagagccacttctccaacgttatccttgactttcgacttcatatgatgtattatttctat 23266702  T
Q  177 ggctgccatagcattatc 194  Q
     || |||||| |||||||    
T  23266703 agcagccataacattatc 23266720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 48211307 - 48211202
Alignment:
Q  89 tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc 188  Q
    ||||||| |||||||| ||||| ||||||||||| || |||||||   |||||||||||||   |||||||| |||||||||||| ||||| |||||| |    
T  48211307 tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatatgatgaatgatctcaatggcagccataac 48211208  T
Q  189 attatc 194  Q
    ||||||    
T  48211207 attatc 48211202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 46390140 - 46390244
Alignment:
Q  89 tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc 188  Q
    ||||||| |||||||| ||||| ||||||||||| || |||||||   |||||||||||||   |||||||| |||||||||||| |||||  ||||| |    
T  46390140 tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatatgatgaatgatctcaatggcaaccataac 46390239  T
Q  189 attat 193  Q
    |||||    
T  46390240 attat 46390244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 11762 - 11867
Alignment:
Q  89 tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc 188  Q
    ||||||| |||||||| ||||| ||||||||||| || |||||||   |||||||||||||   |||||||  || ||||||||| |||||  |||||||    
T  11762 tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatacgattaatgatctcaatggcaaccatagc 11861  T
Q  189 attatc 194  Q
    ||||||    
T  11862 attatc 11867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 21702148 - 21702043
Alignment:
Q  89 tgtcatacgctttacttatatccagcttaagagcaacatctcccaatatacctttgactttcgacttcatataatgaatgatctctatggctgccatagc 188  Q
    ||||||| |||||||| ||||| ||||||||||| || |||||||   |||||||||||||   |||||||  || ||||||||| |||||  |||||||    
T  21702148 tgtcataagctttactaatatcaagcttaagagccacttctcccacattacctttgacttttatcttcatacgattaatgatctcaatggcaaccatagc 21702049  T
Q  189 attatc 194  Q
    ||||||    
T  21702048 attatc 21702043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 5613176 - 5613214
Alignment:
Q  78 ccaatcaattttgtcatacgctttacttatatccagctt 116  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  5613176 ccaatcaattctatcatacgctttacttatatccagctt 5613214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University