View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16519_low_3 (Length: 491)
Name: NF16519_low_3
Description: NF16519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16519_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 195 - 475
Target Start/End: Complemental strand, 28001441 - 28001161
Alignment:
| Q |
195 |
caaattcgtttgtgcaccatataactaacctgcctgagtactaagcatgtatttatttgttagggtaaaaggctctgaaatgacataatattctactagt |
294 |
Q |
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| T |
28001441 |
caaattcgtttgtgcaccatataactaacctgcctgagtactaagcatgtatttatttgttagggtaaaaggctctgaaatgacataatattctactagt |
28001342 |
T |
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| Q |
295 |
aacaacaactagcaacaatacttagaagcgtgatggcttgtccgcacgagcgggcctctcgcgtcccaagctcatgataatttcaatttgcaatgttctc |
394 |
Q |
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| T |
28001341 |
aacaacaactagcaacaatacttagaagcgtgatggcttgtccgcacgagcgggcctctcgcgtcccaagctcatgataatttcaatttgcaatgttctc |
28001242 |
T |
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| Q |
395 |
tgtattttgctgcatttgccattttgtgactactatttaattggtgtctgtaggatcagataaatatcaatggacacactg |
475 |
Q |
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| T |
28001241 |
tgtattttgctgcatttgccattttgtgactactatttaattggtgtctgtaggatcagataaatatcaatggacacactg |
28001161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 28001637 - 28001550
Alignment:
| Q |
112 |
tccaccttattccatcaatccaaataaaatcttaatgctaacgtcttggtctggttttggtaatgagggttgattctataatgcaaat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28001637 |
tccaccttattccatcaatccaaataaaatcttaatgctaacgagttggtctggttttggtaatgagggttgattctataatggaaat |
28001550 |
T |
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