View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16519_low_4 (Length: 472)
Name: NF16519_low_4
Description: NF16519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16519_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 15 - 466
Target Start/End: Original strand, 33022459 - 33022920
Alignment:
| Q |
15 |
aataatttgacttgaaatcattgctggccttcacattttatcgcaaagcagcatcaacaaattgattctttatttatttacacatacatccaatataatt |
114 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33022459 |
aataatttgacttgaaatcattgttggccttcacattttatcgcaaagcagcatcaacaaattgattctttatttatttacacatacatccaatataatt |
33022558 |
T |
|
| Q |
115 |
aatgcccata--------------tttttgttttaatcaggatagaggatgttttaactcgttacattaatattcctgaccaagaaagagataagtatgt |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33022559 |
aatgcccatagtgatgttgttatatttttgttttaatcaggatagaggatgttttaactcgttacattaatattcctgaccaagaaagagataagtatgt |
33022658 |
T |
|
| Q |
201 |
tctcaacaaacaattcattttgcatgagttatatatatatgttcaaaacttctaaacacatttggctttttaatttcattatttatttcttgcagtgctg |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33022659 |
tctcaacaaacaattcattttgcatgagttata----tatgttcaaaacttctaaacacatttggctttttaatttcattatttatttcttgcagtgctg |
33022754 |
T |
|
| Q |
301 |
taagttttcctgagctaccctaccgaaggtatactctcagaaatcctcttctctcactcattcttctgttccttcttcatttcttaattgttttatcaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33022755 |
taagttttcctgagctaccctaccgaaggtatactctcagaaatcctcttctctcactcattcttctgttccttcttcatttcttaattgttttatcaat |
33022854 |
T |
|
| Q |
401 |
aaattaattattgaagaacttaattattatttttacttgtccaaaaaacttgcttaacctttgctt |
466 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33022855 |
aaattaattattatagaacttaattattatttttacttgtcaaaaaaacttgcttaacctttgctt |
33022920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 25659779 - 25659672
Alignment:
| Q |
134 |
taatcaggatagaggatgttttaactcgttacattaatattcctgaccaagaaagagataagtatgttctcaacaaacaa-ttcattttgcatgagttat |
232 |
Q |
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||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |
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| T |
25659779 |
taatcaggatagaagatgttttaagtcgttacattaatcttcctgaccaagaaagagataagtatgttctcaacaaataacttcattttgcatgaattat |
25659680 |
T |
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| Q |
233 |
atatatat |
240 |
Q |
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|||||||| |
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| T |
25659679 |
atatatat |
25659672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 241 - 340
Target Start/End: Complemental strand, 25659625 - 25659516
Alignment:
| Q |
241 |
gttcaaaacttctaaacacatttggctttttaatttcattatttat----------ttcttgcagtgctgtaagttttcctgagctaccctaccgaaggt |
330 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
25659625 |
gttctaaacttctaaacacatttggctttttaatttcattatttatagtaatttgtttcttgcagtgctgtaagttttcctgagccaccctaccgcaggt |
25659526 |
T |
|
| Q |
331 |
atactctcag |
340 |
Q |
| |
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|||||||||| |
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|
| T |
25659525 |
atactctcag |
25659516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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