View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16519_low_5 (Length: 356)
Name: NF16519_low_5
Description: NF16519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16519_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 114 - 340
Target Start/End: Original strand, 46238503 - 46238729
Alignment:
| Q |
114 |
tgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctccagttgctgatgtaagttgtctattatgtgaatccctttactttcctcc |
213 |
Q |
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| T |
46238503 |
tgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctccagttgctgatgtaagttgtctattatgtgaatccctttactttcctct |
46238602 |
T |
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| Q |
214 |
ctttactcctatgaatatgcatgctatttctttgtttattcttgttgtggtactgttaacgaggaaaaggaggaaaacgttaaagaagttgtgaattttt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46238603 |
gtttactcctatgaatatgcatgctatttctttgtttattcttgttgtggtactgttaacgaggaaaaggaggaaaacgttaaagatgttgtgaattttt |
46238702 |
T |
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| Q |
314 |
tagggtttttaattgatgtgaacttgt |
340 |
Q |
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| T |
46238703 |
tagggtttttaattgatgtgaacttgt |
46238729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 114 - 340
Target Start/End: Complemental strand, 3456155 - 3455929
Alignment:
| Q |
114 |
tgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctccagttgctgatgtaagttgtctattatgtgaatccctttactttcctcc |
213 |
Q |
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|||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3456155 |
tgcaggaaacaatcgaagggcaatcgacggttatgaaaaacgttggagctccagttgctgatgtaagttgtctattatgtgaatccctttactttcttct |
3456056 |
T |
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| Q |
214 |
ctttactcctatgaatatgcatgctatttctttgtttattcttgttgtggtactgttaacgaggaaaaggaggaaaacgttaaagaagttgtgaattttt |
313 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3456055 |
gtttactcctaagaatatgcatgctatttctttgtttattcttgttgtggtactgttaacgaggaaaaggaggaaaacgttaaagaagttgtgaattttt |
3455956 |
T |
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| Q |
314 |
tagggtttttaattgatgtgaacttgt |
340 |
Q |
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||||||||| ||||||||||||||||| |
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| T |
3455955 |
tagggttttaaattgatgtgaacttgt |
3455929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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