View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16519_low_8 (Length: 303)
Name: NF16519_low_8
Description: NF16519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16519_low_8 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 293
Target Start/End: Original strand, 45683083 - 45683358
Alignment:
| Q |
18 |
gaaaacattgaagcaaacaagcctgtgaggcaaaaaattaccgagcctaagactccttaccatcctatgctggaagatgacagtatgtacagaagattag |
117 |
Q |
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| T |
45683083 |
gaaaacattgaagcaaacaagcctgtgaggcaaaaaattaccgagcctaagactccttaccatcctatgctggaagatgacagtatgtacagaagattag |
45683182 |
T |
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| Q |
118 |
ttaaacttcatgtcctttaaattttcttttgtttatcagaatgagtctgtatggatatcatacgactatctattgaataacattagcaggaaaatcataa |
217 |
Q |
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| T |
45683183 |
ttaaacttcatgtcctttaaattttcttttgtttatcagaatgagtctgtatggatatcatacgactatctattgaataacattagcaggaaaatcataa |
45683282 |
T |
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| Q |
218 |
tatttttacatccttgaactgtaatgttgaatttatcttctcatagtgggtattaaattcaaaacttcagtctgtg |
293 |
Q |
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| T |
45683283 |
tatttttacatccttgaactgtaatgttgaatttatcttctcatagtgggtattaaattcaaaacttcagtttgtg |
45683358 |
T |
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Target: scaffold0022 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 97405 - 97299
Alignment:
| Q |
24 |
attgaagcaaacaagcctgtgaggcaaaaaattaccgagcctaagactccttaccatcctatgctggaagatgacagtatgtacagaagattagttaaac |
123 |
Q |
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||||| |||||||| ||||||||||| |||||||| |||||||||||||| || ||||||||| | || || ||| ||||||| |||| || | ||||| |
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| T |
97405 |
attgaggcaaacaaacctgtgaggcagaaaattactgagcctaagactccatatcatcctatgattgatgacgactgtatgtaaagaacataacgtaaac |
97306 |
T |
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| Q |
124 |
ttcatgt |
130 |
Q |
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||||||| |
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| T |
97305 |
ttcatgt |
97299 |
T |
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