View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16519_low_9 (Length: 294)
Name: NF16519_low_9
Description: NF16519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16519_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 31733351 - 31733091
Alignment:
| Q |
18 |
aatattatcatgttaaacaggtttagatttcacttttaatagctagttcattagacgagtgatactcatgccggggtaggcttgagaattgagatcaatt |
117 |
Q |
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| T |
31733351 |
aatattatcatgttaaacaggtttagatctcacttctagtagctagttcattagacgagtgatactcatgtcggggtaggcttgagaattgagatcaatt |
31733252 |
T |
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| Q |
118 |
ctcacaacatgacttgaatttaattacgaaaagctagatgtgtccaaatgcacatatatattgtagatatatctttaaattcttaacttgctatctaata |
217 |
Q |
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| T |
31733251 |
ctcacaacatgacttgaatttaattacgaaaagttagatgtgtccaaatgcacatatacattgtagatatatctttaaattcttaacttgctatctgatg |
31733152 |
T |
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| Q |
218 |
ggtactaagataccaaccacattagttttaagaactttatgaaactttagccacttttcat |
278 |
Q |
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| T |
31733151 |
ggtactaagataccaaccacattacttttaagaattttatgaaactttagccacttttcat |
31733091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 21 - 278
Target Start/End: Original strand, 32852766 - 32853032
Alignment:
| Q |
21 |
attatcatgttaaacaggtttagatttcacttttaatagctagttcattagacgagtgatactcatgccggggtaggcttgagaattgagatcaattctc |
120 |
Q |
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| T |
32852766 |
attatcatgttaaacgggattagatctcactcctaatagctagtttatttgacgagggatgctcatgccggggtaggcttgaga-------tcaattttc |
32852858 |
T |
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| Q |
121 |
acaacatgacttgaatttaattacgaaaagcta-----------gatgtgtccaaatgcacatatatattgtagatatatc-----tttaaattcttaac |
204 |
Q |
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| T |
32852859 |
acaacatgacttgaatttcaccacgaaaagctaattcattggaagatgtgtccaaatacacatatacattgtagatatatccatcttttaagttcttaac |
32852958 |
T |
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| Q |
205 |
ttgctatctaataggtactaagataccaaccacattagttttaagaactttatgaaactttagccacttttcat |
278 |
Q |
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||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32852959 |
ttgctatctgatgggtactaagataccaaccacatcagttttaagaactttatgaaactttagccacttttcat |
32853032 |
T |
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