View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16520_high_1 (Length: 277)
Name: NF16520_high_1
Description: NF16520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16520_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 43107901 - 43107640
Alignment:
| Q |
1 |
tcatcatgatgaaggatcaacaagttcaaaaattcacaagtgtgaattatgtaacaaaatttttaggtgtggaaaaggattaggtggtcacaaaagaatc |
100 |
Q |
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| T |
43107901 |
tcatcatgatgaaggatcaacaagttcaaaaattcacaagtgtgaattatgtaacaaaatttttaggtgtggaaaaggattaggtggtcacaaaagaatc |
43107802 |
T |
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| Q |
101 |
catagtcaagccctagggaaagagggtgagtcgaaagcaaaggctaattgcaattctaatgatgtaaaattaagttgtgatgtttgcaaaaagaacttcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43107801 |
catagtcaagccctagggaaagagggtgagtcgaaagcagaggctaattgcaattctaatgatgtaaaattaagttgtgatgtttgcaaaaagaacttcc |
43107702 |
T |
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| Q |
201 |
aatccaataaggctttacatggtcacatgagatctcatcctgaaagggaatggcggggtatg |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43107701 |
aatccaataaggctttacatggtcacatgagatctcatcctgaaagggaatggcggggtatg |
43107640 |
T |
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