View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16520_low_1 (Length: 491)
Name: NF16520_low_1
Description: NF16520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16520_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 6 - 473
Target Start/End: Original strand, 45533671 - 45534138
Alignment:
| Q |
6 |
agtgagaagaaaagtcagttggttcccggtacaagagataagggctaatggcatattcaacctctcattgtttttcatcttgcatagatgaaagattcct |
105 |
Q |
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| T |
45533671 |
agtgagaagaaaagtcagttggttcccggtacaagagataagggctaatggcatattcaacctctcattgtttttcatcttgcatagatgaaagattcct |
45533770 |
T |
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| Q |
106 |
tgacgaggggaataggatccatcaacagtatgaactcagatatgaaacattcaatgaaatggaatgaacaattcgccaagaaatgagaaagaacaatttt |
205 |
Q |
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| T |
45533771 |
tgacgaggggaataggatccatcaacagtatgaactcagatatgaaacattcaatgaaatggaatgaacaattcgccaagaaatgagaaagaacaatttt |
45533870 |
T |
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| Q |
206 |
aaaacatgcaagagagaaggtaaagaaaccaataaaagtgagaaaatgaaggggnnnnnnnttggccaacctggagcttnnnnnnntcgaggaaccagaa |
305 |
Q |
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| T |
45533871 |
aaaacatgcaagagagaaggtaaagaaaccaataaaagtgagaaaatgaagggaaaaaaaattggccaacctggagcttaaaaaaatcgaggaaccagaa |
45533970 |
T |
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| Q |
306 |
aatgaggagaaatgtaagagagaaacagaacacattaaaaatgttgagtgtgacccgtcaatttacatatctagcattcataaaggtgcaaataaaatgt |
405 |
Q |
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| T |
45533971 |
aatgaggagaaatgtaagagacaaacagaacacattaaaaatgttgagtgtgacccgtcaatttacatatctagcattcataaaggtgcaaataaaatgt |
45534070 |
T |
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| Q |
406 |
caataaaagttaattaagttaatgatggatgatactcgtattggttggttattacctaattatgaagc |
473 |
Q |
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| T |
45534071 |
caataaaagttaattaagttaatgatggatgatactcatattggttggttattacctaattatgaagc |
45534138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 188
Target Start/End: Original strand, 35213217 - 35213343
Alignment:
| Q |
58 |
atattcaacctctcattgtttttcatcttgcatagatgaaagattccttgacgaggggaataggatccatcaacagtatgaactcagatatgaaacattc |
157 |
Q |
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|||||||||||||||| ||||| ||| ||||| | |||||| || ||||| | |||||||||||| ||||| |||||||| |||||||| |||| |
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| T |
35213217 |
atattcaacctctcatgtttttttatcatgcattgctgaaagtttacttgatggagggaataggatcaatcaat----tgaactcacatatgaaatattc |
35213312 |
T |
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| Q |
158 |
aatgaaatggaatgaacaattcgccaagaaa |
188 |
Q |
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| T |
35213313 |
aaggaaatggaatgaacaattcgccaagaaa |
35213343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 295 - 334
Target Start/End: Original strand, 35202747 - 35202786
Alignment:
| Q |
295 |
aggaaccagaaaatgaggagaaatgtaagagagaaacaga |
334 |
Q |
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| T |
35202747 |
aggaaccagaaaatgaggagaattgtaagagagaaacaga |
35202786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 35216625 - 35216723
Alignment:
| Q |
153 |
cattcaatgaaatggaatgaacaattcgccaagaaatgagaaagaacaattttaaaacatgcaagagagaaggtaaagaaaccaataaaagtgagaaaa |
251 |
Q |
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||||||| |||||||||||| |||| ||||||||| ||||||||| | ||||||||| |||| | |||||| |||||| ||||||| |||||||| |
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| T |
35216625 |
cattcaagtaaatggaatgaataatttgccaagaaaggagaaagaatagagttaaaacatacaagcgtgaaggtgaagaaagcaataaacatgagaaaa |
35216723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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