View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16520_low_11 (Length: 237)
Name: NF16520_low_11
Description: NF16520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16520_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8376982 - 8377201
Alignment:
| Q |
1 |
tgggatattctcacagttgcatagctcaatcatgtagccatcagggtcatggaagaacacttgatctaccttaattccttcatcctctaccaatgctgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8376982 |
tgggatattctcacagttgcatagctcaatcatgtagccatcagggtcatggaagaacacttgatctaccttaattccttcatcctctaccaatgctgta |
8377081 |
T |
|
| Q |
101 |
acatatctcattcccttttcttctaatctcttcttaacaagttcaacgtccgtacactacaaaaaaccatattgtatataaatttttggtaagcaaagct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8377082 |
acatatctcattcccttttcttctaatctcttcttaacaagttcaacgtccgtacactacaaaaaaccatattgtatataaatttttggtaa--aaagct |
8377179 |
T |
|
| Q |
201 |
acatgattaacagtagctaaat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
8377180 |
acatgattaacagtagctaaat |
8377201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 8367695 - 8367811
Alignment:
| Q |
43 |
agggtcatggaagaacacttgatctaccttaattccttcatcctctaccaatgctgtaacatatctcattcccttttcttctaatctcttcttaacaagt |
142 |
Q |
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||||||||||||||||||||||||| ||||||||| | |||||| |||||| | ||||||||| || || ||||||||||||||||||||| ||||| || |
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| T |
8367695 |
agggtcatggaagaacacttgatcttccttaattcttacatcctttaccaaagttgtaacatacctaatccccttttcttctaatctcttcataacatgt |
8367794 |
T |
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| Q |
143 |
tcaacgtccgtacacta |
159 |
Q |
| |
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| ||| ||| ||||||| |
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| T |
8367795 |
taaacatccatacacta |
8367811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 32248868 - 32248972
Alignment:
| Q |
1 |
tgggatattctcacagttgcatagctcaatcatgtagccatcagggtcatggaagaacacttgatctaccttaattccttcatcctctaccaatgctgta |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| || || ||||| |||||||||||||||||||| || ||| |
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| T |
32248868 |
tgggatattctcacagttgcaaagctctatcatgtatccatcagggtcatggaagaacacctgctccaccttgattccttcatcctctaccaaagccgta |
32248967 |
T |
|
| Q |
101 |
acata |
105 |
Q |
| |
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||||| |
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|
| T |
32248968 |
acata |
32248972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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