View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16520_low_15 (Length: 224)

Name: NF16520_low_15
Description: NF16520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16520_low_15
NF16520_low_15
[»] chr2 (17 HSPs)
chr2 (10-192)||(39474054-39474236)
chr2 (10-192)||(39416146-39416328)
chr2 (10-197)||(39152011-39152198)
chr2 (10-197)||(39136394-39136581)
chr2 (11-197)||(39487963-39488148)
chr2 (25-191)||(39458337-39458503)
chr2 (10-183)||(39422275-39422448)
chr2 (10-153)||(39495359-39495502)
chr2 (11-168)||(39215039-39215196)
chr2 (11-162)||(39602105-39602256)
chr2 (10-156)||(39123635-39123781)
chr2 (17-156)||(39427504-39427643)
chr2 (11-197)||(38792216-38792401)
chr2 (169-224)||(38792898-38792953)
chr2 (17-156)||(39382026-39382165)
chr2 (10-60)||(39129596-39129646)
chr2 (17-162)||(39450619-39450764)
[»] chr7 (1 HSPs)
chr7 (35-192)||(19806780-19806937)
[»] chr5 (1 HSPs)
chr5 (80-189)||(17059024-17059133)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 39474236 - 39474054
Alignment:
Q  10 aagaatatgcagggaaaaattgaagaatgtgtcaaggattttgtagcaaaggatggacagctctatttggtggaggaattgattcaagagcgcaagcaag 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39474236 aagaaaatgcagggaaaaattgaagaatgtgtcaaggattttgtagcaaaggatggacagctctatttggtggaggaattgattcaagagcgcaagcaag 39474137  T
Q  110 aactcaacacaaaagatatggaactttgtcaagtcatggataacatttcaaaacagaaggaatttgaaagccaagtgaaggag 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39474136 aactcaacacaaaagatatggaactttgtcaagtcatggataacatttcaaaacagaaggaatttgaaagccaagtgaaggag 39474054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 10 - 192
Target Start/End: Complemental strand, 39416328 - 39416146
Alignment:
Q  10 aagaatatgcagggaaaaattgaagaatgtgtcaaggattttgtagcaaaggatggacagctctatttggtggaggaattgattcaagagcgcaagcaag 109  Q
    ||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||    
T  39416328 aagaaaatgcaggtaaaaactgaagaatgtgtcaaggattttgtagcaaaggaaggacagctctatttggtggaggaattgattcgggagcgcaagcaag 39416229  T
Q  110 aactcaacacaaaagatatggaactttgtcaagtcatggataacatttcaaaacagaaggaatttgaaagccaagtgaaggag 192  Q
    ||||||| ||||||||  |||||||| ||||| |||  |||||||||||||||||||||||||||||||||||||||||||||    
T  39416228 aactcaagacaaaagagttggaacttcgtcaaatcaccgataacatttcaaaacagaaggaatttgaaagccaagtgaaggag 39416146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 39152011 - 39152198
Alignment:
Q  10 aagaatatgcagggaaaaattgaagaatgtgtcaaggattttgtagcaaaggatggacagctctatttggtggaggaattgattcaagagcgcaagcaag 109  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||| ||||||| ||||||  ||||||||||||||    
T  39152011 aagaaaatgcaggggaaaattgatgaatgtgtcaaggattttgtagcaaaggaagggcagctctatttgatggaggacttgattggagagcgcaagcaag 39152110  T
Q  110 aactcaacacaaaagatatggaactttgtcaagtcatggataacatttcaaaacagaaggaatttgaaagccaagtgaaggaggtggt 197  Q
    ||||||| ||||||||  |||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  39152111 aactcaagacaaaagagttggaacttcgtgaagtcatggataacatttcaaaacagaaggaatttgaaagccaagtaaaggagctggt 39152198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 39136394 - 39136581
Alignment:
Q  10 aagaatatgcagggaaaaattgaagaatgtgtcaaggattttgtagcaaaggatggacagctctatttggtggaggaattgattcaagagcgcaagcaag 109  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||  |||| ||||||| ||||||  ||||| |||| |||    
T  39136394 aagaaaatgcagggaaaaattgacgaatgtgtcaaggattttgtagcaaaggaagggcagctcggtttgatggaggacttgattggagagcacaagaaag 39136493  T
Q  110 aactcaacacaaaagatatggaactttgtcaagtcatggataacatttcaaaacagaaggaatttgaaagccaagtgaaggaggtggt 197  Q
    |||| || ||||||||  |||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  39136494 aactaaagacaaaagagttggaacttcgtcaagtcatggataacatttcaaaacaaaaggaattggaaagccaagtgaaggagctggt 39136581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 39488148 - 39487963
Alignment:
Q  11 agaatatgcagggaaaaattgaagaatgtgtcaaggattttgtagcaaaggatggacagctctatttggtggaggaattgattcaagagcgcaagcaaga 110  Q
    |||| |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| |||||| ||||||| ||||||  || || |||||||||    
T  39488148 agaaaatgcaggggaaaattgaagaatgtgtcaaagattttgtagcaaaggaaggacagctatatttgatggaggacttgattggag-gcacaagcaaga 39488050  T
Q  111 actcaacacaaaagatatggaactttgtcaagtcatggataacatttcaaaacagaaggaatttgaaagccaagtgaaggaggtggt 197  Q
    |||| | |||||||| | ||||||| || ||||||||||||||||||||||||||||| |||||||||||||  |||||||| ||||    
T  39488049 actcgatacaaaagagacggaacttcgtgaagtcatggataacatttcaaaacagaagaaatttgaaagccagatgaaggagctggt 39487963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 25 - 191
Target Start/End: Original strand, 39458337 - 39458503
Alignment:
Q  25 aaaattgaagaatgtgtcaaggattttgtagcaaaggatggacagctctatttggtggaggaattgattcaagagcgcaagcaagaactcaacacaaaag 124  Q
    ||||||||| |||||||| ||||||||| ||||||||| | ||| ||||||||| |||| || ||||||  ||||||||||||||||||||| |||||||    
T  39458337 aaaattgaaaaatgtgtcgaggattttgcagcaaaggaagcacaactctatttgatggaagacttgattggagagcgcaagcaagaactcaagacaaaag 39458436  T
Q  125 atatggaactttgtcaagtcatggataacatttcaaaacagaaggaatttgaaagccaagtgaagga 191  Q
    | || ||||||  |||||||| |||||||||||||||||||||| | |||||||| |||||||||||    
T  39458437 agatagaacttcatcaagtcaaggataacatttcaaaacagaagcattttgaaagacaagtgaagga 39458503  T

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Target: chr2; HSP #7
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 10 - 183
Target Start/End: Complemental strand, 39422448 - 39422275
Alignment:
Q  10 aagaatatgcagggaaaaattgaagaatgtgtcaaggattttgtagcaaaggatggacagctctatttggtggaggaattgattcaagagcgcaagcaag 109  Q
    ||||| |||||||| |||||||||||||||||| |||| || |||||||||||   |||||||| |||| ||||  | ||||||  ||||||||||||||    
T  39422448 aagaaaatgcaggggaaaattgaagaatgtgtcgaggaattcgtagcaaaggaatcacagctctctttgatggaaaacttgattggagagcgcaagcaag 39422349  T
Q  110 aactcaacacaaaagatatggaactttgtcaagtcatggataacatttcaaaacagaaggaatttgaaagccaa 183  Q
    |||||||||||||| |  |||||||| || ||||||||||| |||||||||||||||||||||| ||| |||||    
T  39422348 aactcaacacaaaaaagctggaacttcgtaaagtcatggatgacatttcaaaacagaaggaattggaaggccaa 39422275  T

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Target: chr2; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 39495502 - 39495359
Alignment:
Q  10 aagaatatgcagggaaaaattgaagaatgtgtcaaggattttgtagcaaaggatggacagctctatttggtggaggaattgattcaagagcgcaagcaag 109  Q
    ||||| ||||||| ||||||||||||||| ||||||||||||| ||||||| | | |||||||| |||| |||| || ||||||  ||||||||||||||    
T  39495502 aagaaaatgcaggaaaaaattgaagaatgcgtcaaggattttgcagcaaagcaagcacagctctgtttgatggatgacttgattggagagcgcaagcaag 39495403  T
Q  110 aactcaacacaaaagatatggaactttgtcaagtcatggataac 153  Q
    ||||||| |||||||| |  |||||| ||| |||||||||||||    
T  39495402 aactcaagacaaaagaaacagaacttcgtccagtcatggataac 39495359  T

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Target: chr2; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 39215039 - 39215196
Alignment:
Q  11 agaatatgcagggaaaaattgaagaatgtgtcaaggattttgtagcaaaggatggacagctctatttggtggaggaattgattcaagagcgcaagcaaga 110  Q
    |||| |||||||||||||||||||||||| | |||||||||||||  ||||| ||  ||||||||||| |||| || ||||||  |||||||||||||||    
T  39215039 agaaaatgcagggaaaaattgaagaatgtattaaggattttgtagtgaaggaagggaagctctatttgatggacgacttgattggagagcgcaagcaaga 39215138  T
Q  111 actcaacacaaaagatatggaactttgtcaagtcatggataacatttcaaaacagaag 168  Q
     ||||| |||||||| || ||||||  ||||||||  | ||||||||||||| |||||    
T  39215139 gctcaagacaaaagagatagaacttaatcaagtcaatggtaacatttcaaaagagaag 39215196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 39602105 - 39602256
Alignment:
Q  11 agaatatgcagggaaaaattgaagaatgtgtcaaggattttgtagcaaaggatggacagctctatttggtggaggaattgattcaagagcgcaagcaaga 110  Q
    |||| |||||||||||||||||||||||| | |||||||||||||  ||||| || || ||||||||  |||| || ||||||  ||||||||||| |||    
T  39602105 agaaaatgcagggaaaaattgaagaatgtattaaggattttgtagtgaaggaagggcaactctatttcatggatgacttgattggagagcgcaagctaga 39602204  T
Q  111 actcaacacaaaagatatggaactttgtcaagtcatggataacatttcaaaa 162  Q
     ||||| || || || |||||||||  |||||||| ||  ||||||||||||    
T  39602205 gctcaaaacgaaggagatggaacttaatcaagtcaagggcaacatttcaaaa 39602256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 156
Target Start/End: Original strand, 39123635 - 39123781
Alignment:
Q  10 aagaatatgcagggaaaaattgaagaatgtgtcaaggattttgtagcaaaggatggacagctctatttggtggaggaattgattcaagagcgcaagcaag 109  Q
    ||||| ||||||||||||| |||||||| ||||||||||||| | | |||| | | ||| |||| |||| |||| ||  |||||  |||||||||| |||    
T  39123635 aagaaaatgcagggaaaaactgaagaatttgtcaaggattttcttgtaaagcaagcacaactctctttgatggacgacatgattggagagcgcaagaaag 39123734  T
Q  110 aactcaacacaaaagatatggaactttgtcaagtcatggataacatt 156  Q
    |||| || |||||||| |  |||||||||||| ||||||||||||||    
T  39123735 aactgaagacaaaagaaacagaactttgtcaaatcatggataacatt 39123781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 39427643 - 39427504
Alignment:
Q  17 tgcagggaaaaattgaagaatgtgtcaaggattttgtagcaaaggatggacagctctatttggtggaggaattgattcaagagcgcaagcaagaactcaa 116  Q
    |||||||| || |||| |||||||||||||||||||  |||||| | | |||||||| |||| || | || ||||||  |||||||||||| |||||||     
T  39427643 tgcagggagaatttgatgaatgtgtcaaggattttgatgcaaagaaagcacagctctgtttgatgaatgacttgattggagagcgcaagcaggaactcag 39427544  T
Q  117 cacaaaagatatggaactttgtcaagtcatggataacatt 156  Q
     |||||||| |  |||||| ||||||||| ||||||||||    
T  39427543 aacaaaagaaacagaacttcgtcaagtcaaggataacatt 39427504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 38792216 - 38792401
Alignment:
Q  11 agaatatgcagggaaaaattgaagaatgtgtcaaggattttgtagcaaaggatggacagctctatttggtggaggaattgattcaagagcgcaagcaaga 110  Q
    |||| |||||||| || ||||||||   |||| ||||||| || || ||||| | | |||| | |||| ||||||| ||||||  |||||| | ||||||    
T  38792216 agaaaatgcaggggaagattgaagagattgtcgaggatttagtcgcgaaggaagtagagctatgtttgatggaggacttgattggagagcgtaggcaaga 38792315  T
Q  111 actcaacacaaaagatatggaactttgtcaagtcatggataacatttcaaaacagaaggaatttgaaagccaagtgaaggaggtggt 197  Q
    |||  | | |||||| | ||| |||| ||||||||||||| ||||||| ||||||||| | || |||||||||||||||||| ||||    
T  38792316 acttgagaaaaaagagaaggagctttatcaagtcatggatgacatttc-aaacagaagcatttggaaagccaagtgaaggagctggt 38792401  T

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Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 38792898 - 38792953
Alignment:
Q  169 gaatttgaaagccaagtgaaggaggtggtattgaaacagaagcatttccaaagcca 224  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||||| |||||||    
T  38792898 gaattcgaaagccaaatgaaggagctggtattgaaacagaagcatttcgaaagcca 38792953  T

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Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 156
Target Start/End: Complemental strand, 39382165 - 39382026
Alignment:
Q  17 tgcagggaaaaattgaagaatgtgtcaaggattttgtagcaaaggatggacagctctatttggtggaggaattgattcaagagcgcaagcaagaactcaa 116  Q
    |||||| ||||| |||||||||| ||||||| |||||||  ||||| |  |||||||||||| ||||  |  |||||  ||||||||||| ||| |||||    
T  39382165 tgcaggaaaaaactgaagaatgtatcaaggagtttgtagtgaaggaagatcagctctatttgatggaaaacatgattggagagcgcaagctagagctcaa 39382066  T
Q  117 cacaaaagatatggaactttgtcaagtcatggataacatt 156  Q
      |||||||  ||||||||  ||||||||| |||||||||    
T  39382065 ggcaaaagaggtggaacttaatcaagtcattgataacatt 39382026  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 39129596 - 39129646
Alignment:
Q  10 aagaatatgcagggaaaaattgaagaatgtgtcaaggattttgtagcaaag 60  Q
    ||||| || ||||| |||||||||||||||||||||||||||| |||||||    
T  39129596 aagaaaatccaggggaaaattgaagaatgtgtcaaggattttgcagcaaag 39129646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 39450619 - 39450764
Alignment:
Q  17 tgcagggaaaaattgaagaatgtgtcaaggattttgtagcaaaggatggacagctctatttggtggaggaattgattcaagagcgcaagcaagaactcaa 116  Q
    |||||| | ||||||| || ||| ||||| | ||||| | |||||| || |||||||||||| ||||  | ||||||  ||||||||||| ||| |||||    
T  39450619 tgcaggaagaaattgacgattgtatcaagcagtttgtggtaaaggaagggcagctctatttgatggaaaacttgattggagagcgcaagctagagctcaa 39450718  T
Q  117 cacaaaagatatggaactttgtcaagtcatggataacatttcaaaa 162  Q
      | ||||| || ||||||  |||||||| ||  ||||||||||||    
T  39450719 ggcgaaagagatagaacttaatcaagtcaaggggaacatttcaaaa 39450764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 35 - 192
Target Start/End: Original strand, 19806780 - 19806937
Alignment:
Q  35 aatgtgtcaaggattttgtagcaaaggatggacagctctatttggtggaggaattgattcaagagcgcaagcaagaactcaacacaaaagatatggaact 134  Q
    |||||||||||||||||||||||||||| || ||||||  |||| ||||||| ||||||  |||||||||| ||||||| || ||||||||  |||||||    
T  19806780 aatgtgtcaaggattttgtagcaaaggaagggcagctccgtttgatggaggacttgattggagagcgcaagaaagaactaaagacaaaagagttggaact 19806879  T
Q  135 ttgtcaagtcatggataacatttcaaaacagaaggaatttgaaagccaagtgaaggag 192  Q
    |  ||||||||||||||||||||||||||| |||||||| |||||||| |||||||||    
T  19806880 tcatcaagtcatggataacatttcaaaacaaaaggaattggaaagccacgtgaaggag 19806937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 80 - 189
Target Start/End: Original strand, 17059024 - 17059133
Alignment:
Q  80 tggaggaattgattcaagagcgcaagcaagaactcaacacaaaagatatggaactttgtcaagtcatggataacatttcaaaacagaaggaatttgaaag 179  Q
    ||||||| ||||||  |||||||||||||||||||   |||||||| |  |||||| |||||||||||||||||||||||||||||||| | ||||||||    
T  17059024 tggaggacttgattggagagcgcaagcaagaactcgtgacaaaagagagagaacttcgtcaagtcatggataacatttcaaaacagaagcattttgaaag 17059123  T
Q  180 ccaagtgaag 189  Q
    | || |||||    
T  17059124 caaattgaag 17059133  T

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