View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16520_low_2 (Length: 396)
Name: NF16520_low_2
Description: NF16520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16520_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 10 - 380
Target Start/End: Original strand, 56294174 - 56294546
Alignment:
| Q |
10 |
agatgaaaaacaaagcaattgatgagtgagacactttttctttttgtgttcaaccagaccatccaacaataagttagttccaaagtcttttaaaatttta |
109 |
Q |
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| T |
56294174 |
agatgaaaaacaaagcaattgaagagtgagacactttttctttttgtgttcaaccagaccatccaacaataagttagttccaaagtcttttaaaatttta |
56294273 |
T |
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| Q |
110 |
gaggtgagaataaatgcagagtcagagggtcaagaatcagtcagatggtcaaattcttgactggtcattactttgatttggatttgtatcccattaaatt |
209 |
Q |
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| T |
56294274 |
gaggtgagaataaatgcagagtcagagggtcaagaatcagtcagatggtcaaattcttgactggtcattactttgatttggatttggatcccattaaatt |
56294373 |
T |
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| Q |
210 |
aaatggaatgga----------tccaacggtttcatagtggacccttcaggttcaatgtcaagtcctctccatactcgtgtttttgtctaatatattatc |
299 |
Q |
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| T |
56294374 |
aaatgaaatggaatggatccaatccaacggtttcatagtggacccttcaggttcaatgtcaagtcctctccatactcgtgtttttgtctaata------- |
56294466 |
T |
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| Q |
300 |
ttatcatatcaatttctaattaattttctcatcacaactctatgatatcattccaactattatgaaaatgaagtttatatg |
380 |
Q |
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| T |
56294467 |
-tatcatatcaatttctaattaattttctcatcacaactctatgatatcattcccaatattatgaaaatgaagtttatatg |
56294546 |
T |
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