View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16520_low_3 (Length: 344)
Name: NF16520_low_3
Description: NF16520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16520_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 9e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 88 - 330
Target Start/End: Original strand, 30161673 - 30161912
Alignment:
| Q |
88 |
tgaatccttttgttctatttgtctctaaacaacaaaatgcagaaaatagtactgagttactaatcagatttatgaagttacatacttggtactactatga |
187 |
Q |
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| T |
30161673 |
tgaatccttttgttctatttgtctctaaacaacaaaatgcagaaaatagtactgagttactaatccgatttatgaagttacatacttgg---tactatga |
30161769 |
T |
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| Q |
188 |
gtctacaacattatattttcatttattatctttattaataatatagcacctctaagaagactctcccattctcttatgtgaacacatttttgcatccaat |
287 |
Q |
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| T |
30161770 |
gtctacaacattatattttcatttattatctttat---taatatagcacctctaagaagactctcccattcttttatgtcaacacatttatgcatccaat |
30161866 |
T |
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| Q |
288 |
attttt---cactactattcttgtgccatttgagttgcagtataat |
330 |
Q |
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|||||| ||||||| ||||||||||||||||||||| |||||| |
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| T |
30161867 |
attttttactactactactcttgtgccatttgagttgcaatataat |
30161912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 30282823 - 30282944
Alignment:
| Q |
18 |
ttaataaagtactaagctcccctctgtttgaacacagttgatcaaggttagattgaaatagcattgtccctgaatccttttgttctatttgtctctaaac |
117 |
Q |
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| T |
30282823 |
ttaataaagtactaagctcccctctgttttagcacagttgatcaaggttagattgaaatggcattgtccctgaatccttttgttctgtttgtctctaagc |
30282922 |
T |
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| Q |
118 |
aacaaaatgcagaaaatagtac |
139 |
Q |
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| T |
30282923 |
aacaaaatgcagaaaatagtac |
30282944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 42938761 - 42938836
Alignment:
| Q |
234 |
cacctctaagaagactctcccattctcttatgtgaacacatttttgcatccaatatttttcactactattcttgtg |
309 |
Q |
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| T |
42938761 |
cacctttaagaggactctcccattctcttatgtgaacacatttttgcattcaatattattcactactattcatgtg |
42938836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 30178361 - 30178398
Alignment:
| Q |
100 |
ttctatttgtctctaaacaacaaaatgcagaaaatagt |
137 |
Q |
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| T |
30178361 |
ttctatttgtctctctacaacaaaatgcagaaaatagt |
30178398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 320
Target Start/End: Original strand, 27484267 - 27484322
Alignment:
| Q |
265 |
gtgaacacatttttgcatccaatatttttcactactattcttgtgccatttgagtt |
320 |
Q |
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| T |
27484267 |
gtgaacacatttttgcatccaatagtattcactaatattcatgtgtcatttgagtt |
27484322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 330
Target Start/End: Original strand, 27463931 - 27464026
Alignment:
| Q |
234 |
cacctctaagaagactctcccattctcttatgtgaacacatttttgcatccaatatttttcactactattcttgtgccatttgagttgcagtataat |
330 |
Q |
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| T |
27463931 |
cacctctaagaaaactc-cacattcttctatgtgaacgcatttatgcatccaatagtattcactactagtcatttgtcatttgagttacaatataat |
27464026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 31088036 - 31087966
Alignment:
| Q |
233 |
gcacctctaagaagactctcccattctcttatgtgaacacatttttgcatccaatatttttcactactatt |
303 |
Q |
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| T |
31088036 |
gcacctctaagagaactctaccattcttctatgtcaacacattattgcattcaatattattgactactatt |
31087966 |
T |
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