View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16520_low_4 (Length: 328)

Name: NF16520_low_4

Description: NF16520

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16520_low_4

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 244; E-Value: 1e-135

Query Start/End: Original strand, 81 - 328

Target Start/End: Original strand, 39471054 - 39471301

Alignment:

Q	81	cctttctttaggaacaggaatagatgaattcgtgtagagatttagtatcataataaaagaaatctttgtgagtgatgtcatggctttgcgggatggcatg	180	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39471054	cctttctttaggaacaggaatagatgaattcgtgtagagatttagtatcataataaaagaaacctttgtgagtgatgtcatggctttgcgggatggcatg	39471153	T

Q	181	atatgagaactttatggcatgagattgaaatgtttgtctttatattatttatgggagaattgatggatggtgaaggctatttactactaccttatatatg	280	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39471154	atatgagaactttatggcatgagattgaaatgtttgtctttatattatttatgggagaattgatggatggtgaaggctatttactactaccttatatatg	39471253	T

Q	281	gaccgtgcaagtttttgtggtgtacaagaatatgtaaaaactatctga	328	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39471254	gaccgtgcaagtttttgtggtgtacaagaatatgtaaaaactatctga	39471301	T

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Target: chr5; HSP #2

Raw Score: 38; E-Value: 0.000000000002

Query Start/End: Original strand, 124 - 169

Target Start/End: Original strand, 39464853 - 39464898

Alignment:

Q	124	agtatcataataaaagaaatctttgtgagtgatgtcatggctttgc	169	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	39464853	agtatcataataagaggaatctttgtgagtgatgtcatggctttgc	39464898	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]