View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16520_low_5 (Length: 292)
Name: NF16520_low_5
Description: NF16520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16520_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 5578892 - 5578628
Alignment:
| Q |
14 |
gcttctacactgtaacattttaacaaagttttgtggtatagaaatagaatagggcggagtccattctatcttaagggttttgtaatacaaaaatagtgat |
113 |
Q |
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| T |
5578892 |
gcttctaaactgtaacattttaacaaagttttgtgatacagaaatagaatagggcggagtccattctatcttaagggttttgtaatacaaaaatagtgat |
5578793 |
T |
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| Q |
114 |
gagaaattgttagcaagttttgtggcatagtgagactgaggacgggtttcatttcatgtgtcaagtgaggtgtgg-aagtagagagtctaaattaaacat |
212 |
Q |
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| T |
5578792 |
gagaaattgttagcaagttttgtggcatagtgagactgaggacgggtttcatttcatgtgtcaagtgaggtgtggaaagtagagagtctaaattaaaaat |
5578693 |
T |
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| Q |
213 |
ggagttttagtctcacattgcttgcaaagaaacataacatacgtagagttgtcttatataataac |
277 |
Q |
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| T |
5578692 |
ggagttttagtcccacattgcttgcaaagaaacataacatacgtagagttgtcctatataataac |
5578628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 277
Target Start/End: Complemental strand, 5570173 - 5570067
Alignment:
| Q |
175 |
caagtgaggtgtggaagtagagagtctaaattaaacatgga----gttttagtctcacattgcttgcaaagaaacataacatacgtagagttgtcttata |
270 |
Q |
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| T |
5570173 |
caagtgaggtgtgaaagaagagagtaaaaattaaacatgaacttttttttagtcccacattgccagcaaagaaacataacatacgggaagttgttctata |
5570074 |
T |
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| Q |
271 |
taataac |
277 |
Q |
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| T |
5570073 |
taataac |
5570067 |
T |
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