View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16520_low_7 (Length: 276)
Name: NF16520_low_7
Description: NF16520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16520_low_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 94 - 276
Target Start/End: Complemental strand, 32077784 - 32077603
Alignment:
| Q |
94 |
ggtgaattacaatcgcaatgtcttcctgaatttatagttcgctgtaaataacattccagcnnnnnnnnnnnnnngataaataaacgaaatgataaaacca |
193 |
Q |
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| T |
32077784 |
ggtgaattacaatcgcaatgtcttcctgaatttatagttcgctgtaaataacattcctgcttttttgtttttta-ataaataaacgaaatgataaaacca |
32077686 |
T |
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| Q |
194 |
ttataaacactcacacataagtgaatgtgttggagttcaaatcccgattttgatgactgacttgatatttgtggattaatatt |
276 |
Q |
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| T |
32077685 |
ttataaacgctcatacataagtgaatgtgttggagttcaaattccgattttgaagtctgacttgatatttgtggattaatatt |
32077603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 33028359 - 33028311
Alignment:
| Q |
168 |
gataaataaacgaaatgataaaaccattataaacactcacacataagtg |
216 |
Q |
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| T |
33028359 |
gataaatagacgaaatggtaaagccattataaactcacacacataagtg |
33028311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 42683062 - 42683101
Alignment:
| Q |
177 |
acgaaatgataaaaccattataaacactcacacataagtg |
216 |
Q |
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| T |
42683062 |
acgaaatgataaaaccattataaactcacacacataagtg |
42683101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 6591007 - 6590964
Alignment:
| Q |
173 |
ataaacgaaatgataaaaccattataaacactcacacataagtg |
216 |
Q |
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| T |
6591007 |
ataaacgaaatggtaaaaccattataaactcacacacataagtg |
6590964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 21530900 - 21530859
Alignment:
| Q |
177 |
acgaaatgataaaaccattataaacactcacacataagtgaa |
218 |
Q |
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| T |
21530900 |
acgaaatggtaaaaccattataaactcacacacataagtgaa |
21530859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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