View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16520_low_9 (Length: 268)
Name: NF16520_low_9
Description: NF16520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16520_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 4598909 - 4598789
Alignment:
| Q |
1 |
gaggacaatgattcaacgctgtcactcgaagaggcactcatggatactaacagaattgattactattatcgtcatctatattatgtttcttctgcaatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4598909 |
gaggacaatgattcaacgctgtcactcgaagaggcgctcatggatactaacagaattgactactattatcgtcatctatattatgtttcttctgcaatca |
4598810 |
T |
|
| Q |
101 |
ggtagcacccttttacttcta |
121 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4598809 |
ggtagcacccttttacttcta |
4598789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 4623407 - 4623302
Alignment:
| Q |
6 |
caatgattcaacgctgtcactcgaagaggcactcatggatactaacagaattgattactattatcgtcatctatattatgtttcttctgcaatcaggtag |
105 |
Q |
| |
|
||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |||||| |
|
|
| T |
4623407 |
caatgatccaacgctatcactggaagaggcactcatggatactaacagaattgattacttttatcgtcatctatattatcttttatctgcaatgaggtag |
4623308 |
T |
|
| Q |
106 |
caccct |
111 |
Q |
| |
|
|||||| |
|
|
| T |
4623307 |
caccct |
4623302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 192 - 252
Target Start/End: Complemental strand, 4598685 - 4598625
Alignment:
| Q |
192 |
gtgtgtaggagtggtgtgaatgtgcaaggatattttgcatggtcccttttggacaactttg |
252 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4598685 |
gtgtgtaggcgtggtgtgaatgtgcaaggatattttgcatggtcccttttggacaactttg |
4598625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 25037406 - 25037313
Alignment:
| Q |
7 |
aatgattcaacgctgtcactcgaagaggcactcatggatactaacagaattgattactattatcgtcatctatattatgtttcttctgcaatca |
100 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| |||||||||||| ||||||| ||||||| |||||| ||||| |||||| |||| |||||||||| |
|
|
| T |
25037406 |
aatgatccaacgctatcacttgaagaggcgctcatggatacttacagaatcgattacttttatcgacatctttattatatttcatctgcaatca |
25037313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 25016124 - 25016030
Alignment:
| Q |
6 |
caatgattcaacgctgtcactcgaagaggcactcatggatactaacagaattgattactattatcgtcatctatattatgtttcttctgcaatca |
100 |
Q |
| |
|
||||||| |||| || ||||| ||||| || || ||||||||| ||||||||||||||| |||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
25016124 |
caatgatccaacactatcacttgaagaagcgctaatggatacttacagaattgattacttttatcgccatctttattatgtttcatctgcaatca |
25016030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 4623189 - 4623141
Alignment:
| Q |
204 |
ggtgtgaatgtgcaaggatattttgcatggtcccttttggacaactttg |
252 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4623189 |
ggtgtgaaggtacaaggatattttgcatggtcccttttggacaactttg |
4623141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 25015907 - 25015858
Alignment:
| Q |
203 |
tggtgtgaatgtgcaaggatattttgcatggtcccttttggacaactttg |
252 |
Q |
| |
|
||||||||| || |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25015907 |
tggtgtgaaagtacaaggatattttgcatggtcacttttggacaactttg |
25015858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 25037187 - 25037138
Alignment:
| Q |
203 |
tggtgtgaatgtgcaaggatattttgcatggtcccttttggacaactttg |
252 |
Q |
| |
|
||||||||| || |||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
25037187 |
tggtgtgaaagtacaaggatattttgcatggtcacttttagacaactttg |
25037138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 25002270 - 25002311
Alignment:
| Q |
43 |
gatactaacagaattgattactattatcgtcatctatattat |
84 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| |||||| |
|
|
| T |
25002270 |
gatactgacagaattgattacttttatcgtcatctttattat |
25002311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 18805598 - 18805701
Alignment:
| Q |
8 |
atgattcaacgctgtcactcgaagaggcactcatggatactaacagaattgattactattatcgtcatctatattatgtttcttctgcaatcaggtagca |
107 |
Q |
| |
|
||||| |||| || |||||||||||| | |||||||||| | | |||||||||||| ||||||||||||| ||||| ||| | ||||||||||||||||| |
|
|
| T |
18805598 |
atgatccaaccctatcactcgaagagacgctcatggatatttatagaattgattaccattatcgtcatctttattacgttgcatctgcaatcaggtagca |
18805697 |
T |
|
| Q |
108 |
ccct |
111 |
Q |
| |
|
|||| |
|
|
| T |
18805698 |
ccct |
18805701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 18805805 - 18805853
Alignment:
| Q |
204 |
ggtgtgaatgtgcaaggatattttgcatggtcccttttggacaactttg |
252 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
18805805 |
ggtgtgaatgtacaaggatattttgcatggtcccttttcgacaattttg |
18805853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University