View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_high_13 (Length: 549)
Name: NF16521_high_13
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 2696929 - 2696763
Alignment:
| Q |
13 |
ctgaaatgaacaggacacactaagcagatgcaaatcaaacata-gtaaaacggaatatgtcataagtgtaggaattttttatcaccacaaaagtatatga |
111 |
Q |
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| T |
2696929 |
ctgaaatgaacaggacacactaagcagatgcaaatcaaacataagtaaaacggaatatgtcataagtgtaggaatattttatcaccacaaaagtatatga |
2696830 |
T |
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| Q |
112 |
aagaaaactgaaaaggaaatctgacattagttgaactgaatgaaacgcgagagatgagaagcaagga |
178 |
Q |
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| T |
2696829 |
aagcaaactgaaaagcaaatctgacattagttgaactgaatgaaacgcgagagatgagaagcaagga |
2696763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 2694204 - 2694114
Alignment:
| Q |
174 |
aaggagaaggaggtaggcgatgtgaaagtaataggaatcaacccaactaatcatttccttaaaaactatgaacaatctaaaacgacaatta |
264 |
Q |
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| T |
2694204 |
aaggagaagaaggtaggcgatgtgaaagtaataggaatcaactcaactaatcatttccttaaaaactatgaacaatctaaaacgacaatta |
2694114 |
T |
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