View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16521_high_20 (Length: 475)
Name: NF16521_high_20
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_high_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Complemental strand, 44371190 - 44370802
Alignment:
| Q |
18 |
ggtttatcagctccagtagctttccaataaccacttccagcagctctatttggcctcgaaccgttgggatactttctgtcccttggagagaaaaaatacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44371190 |
ggtttatcagctccagtagctttccaataaccacttccagcagctcgatttggcctcgaaccgttcggatactttctgtcccttggagagaaaaaatacc |
44371091 |
T |
|
| Q |
118 |
attctttctcgctatggtaacccatttctgcgtacataaagaaaaaag-aattattcatttgcaattgggaggtaaaataataaaatctgactaaggatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
44371090 |
attctttctcgctatggtaacccatttctgcgtacataaacaaaaaaataattattgatttgcaattgggaggtaaaataaaaaaatatgactaaggatt |
44370991 |
T |
|
| Q |
217 |
gttctagatagattaagtacctggaagctgccatggatcaaacttatacaaatcaacttctttgacaacgggaacagaaatagattgaccagcacatttg |
316 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44370990 |
gttctagctagattaagtacctggaagctgccatggatcaaacttatacaaatcaacttctttgacaacgggaacagaaatagattgaccagcacatttg |
44370891 |
T |
|
| Q |
317 |
cgacacaagtagtgattcaccaattcttcatcagtagggtgaaatctgaaaccaggtggtaattctaattcaccttgcattcttgtgtt |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44370890 |
cgacacaagtagtgattcaccaattcttcatcagtagggtgaaatctgaaaccaggtggtaattctaattcaccttgcattcttgtgtt |
44370802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 377
Target Start/End: Original strand, 54270143 - 54270180
Alignment:
| Q |
340 |
ttcttcatcagtagggtgaaatctgaaaccaggtggta |
377 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
54270143 |
ttcttcatcagttgggtgaaacctgaaaccaggtggta |
54270180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 231 - 398
Target Start/End: Complemental strand, 39492619 - 39492452
Alignment:
| Q |
231 |
aagtacctggaagctgccatggatcaaacttatacaaatcaacttctttgacaacgggaacagaaatagattgaccagcacatttgcgacacaagtagtg |
330 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||| || ||||||| ||| | | |||||| || | |||||||||||| |
|
|
| T |
39492619 |
aagtacctggaagatgccatggatcaaacttatacaaatcaatttctttgataataggaacagcaattggaagggaagcacactttctacacaagtagtg |
39492520 |
T |
|
| Q |
331 |
attcaccaattcttcatcagtagggtgaaatctgaaaccaggtggtaattctaattcaccttgcattc |
398 |
Q |
| |
|
|||||| | || ||||||||||||||||||||||| ||||||||||| |||||| | |||||||||| |
|
|
| T |
39492519 |
attcacaagctcatcatcagtagggtgaaatctgaagccaggtggtaactctaatgctccttgcattc |
39492452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 20701767 - 20701676
Alignment:
| Q |
36 |
gctttccaataaccacttccagcagctctatttggcctcgaaccgttgggatactttctgtcccttggagagaaaaaataccattctttctc |
127 |
Q |
| |
|
||||||||||||||| |||||| |||| ||||| || ||||| || ||||| || |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
20701767 |
gctttccaataaccagaaccagcaactctgtttggtctagaaccatttggatatttcctgtcccttggactgaagaaataccattctttctc |
20701676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 39492813 - 39492707
Alignment:
| Q |
21 |
ttatcagctccagtagctttccaataaccacttccagcagctctatttggcctcgaaccgttgggatactttctgtcccttggagagaaaaaataccatt |
120 |
Q |
| |
|
||||||||||| || || |||||||| || |||| ||||| | || |||| |||||||| ||||| |||| ||||||||||||||||||||||| | |
|
|
| T |
39492813 |
ttatcagctccggtcgccttccaatatccggttcccgcagcccggttcggccgtgaaccgtttggatattttcgatcccttggagagaaaaaataccact |
39492714 |
T |
|
| Q |
121 |
ctttctc |
127 |
Q |
| |
|
||||||| |
|
|
| T |
39492713 |
ctttctc |
39492707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 40733766 - 40733872
Alignment:
| Q |
17 |
aggtttatcagctccagtagctttccaataaccacttccagcagctctatttggcctcgaaccgttgggatactttctgtcccttggagagaaaaaatac |
116 |
Q |
| |
|
|||||| |||| |||||| |||||||||||||| ||||| |||||||| |||||| | || ||||||||||||||||||||||||| || |||||| |
|
|
| T |
40733766 |
aggtttgtcagttccagttgctttccaataacctacaccagctgctctattaggcctcaatcctttgggatactttctgtcccttggagtaaagaaatac |
40733865 |
T |
|
| Q |
117 |
cattctt |
123 |
Q |
| |
|
||||||| |
|
|
| T |
40733866 |
cattctt |
40733872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 18428683 - 18428784
Alignment:
| Q |
20 |
tttatcagctccagtagctttccaataaccacttccagcagctctatttggcctcgaaccgttgggatactttctgtcccttggagagaaaaaataccat |
119 |
Q |
| |
|
|||||| | |||||||||||||||||||||| ||| ||||||||||| ||| || || ||||||||||| || ||||||| |||||||||||| |
|
|
| T |
18428683 |
tttatctgttccagtagctttccaataaccagaaacagttgctctatttggtctcaccccatttggatactttctttctcttggagtaaaaaaataccat |
18428782 |
T |
|
| Q |
120 |
tc |
121 |
Q |
| |
|
|| |
|
|
| T |
18428783 |
tc |
18428784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 372
Target Start/End: Complemental strand, 40728709 - 40728677
Alignment:
| Q |
340 |
ttcttcatcagtagggtgaaatctgaaaccagg |
372 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
40728709 |
ttcttcatcagtagggtgaaatctaaaaccagg |
40728677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University