View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16521_high_21 (Length: 471)
Name: NF16521_high_21
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_high_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 16 - 456
Target Start/End: Original strand, 53422525 - 53422966
Alignment:
| Q |
16 |
tatatttatcatttctccatgtaatggatccaaagagatcatcgttcagcgggattaaagtgtaggagaaaataacttggtagcttannnnnnngctact |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53422525 |
tatatttatcatttctccatgtaatggatccaaagagatcatcgttcagcgggattaaagtgtaggagaaaataacttggtagcttatttttttgctact |
53422624 |
T |
|
| Q |
116 |
ttttgtaaattggagtttctctggaatcaattggactttcactccactaggagcatcaacgatggcggagtagactgtttcatcctcttcaccaacattt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53422625 |
ttttgtaaattggagtttctctggaatcaattggactttcaccccactaggagcatcaacgatggcggagtagactgtttcatcctcttcaccaacattt |
53422724 |
T |
|
| Q |
216 |
gtaacagttctactcacattcacacttcctctcccagtgaagttggagattgctattgaaggatagttgatattggaaatatgatcaggagttgaatcct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53422725 |
gtaacagttctactcacattcacacttcctctcccagtgaagttggagattgctattgaaggatagttgatattggaaatatgatcaggagttgaatcct |
53422824 |
T |
|
| Q |
316 |
tagggcaactgaaactaccagggacggtttttgagatagccttaattgt-ggttgtattgtatcctaggtaacacaagtagttcaagtagtcaatggtgc |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53422825 |
tagggcaactgaaactaccagggacggtttttgagatagccttaattgtgggttgtattgtatcctaggtaacacaagtagttcaagtagtcaatggtgc |
53422924 |
T |
|
| Q |
415 |
tggtttcaaaaactagccctggttggaatgattcagatattg |
456 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
53422925 |
tggtttcataaactagccctggttggaatgattcagatattg |
53422966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 450
Target Start/End: Original strand, 53430491 - 53430922
Alignment:
| Q |
16 |
tatatttatcatttctccatgtaatggatccaaagagatcatcgttcagcgggattaaagtgtaggagaaaataacttggtagcttannnnnnngctact |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| || || |||| | ||||| || ||||| |||||||||||||||| |||||| |
|
|
| T |
53430491 |
tatatttatcatttctccatgtaatggatccaaatagatcttcctttagcgaggttaaattg---gagaagataacttggtagcttattctattgctact |
53430587 |
T |
|
| Q |
116 |
ttttgtaaattggagtttctctggaatcaattggactttcactccactaggagcatcaacgatggcggagtagactgtttcatcctcttcaccaacattt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
53430588 |
ttttgtaaattggagtttctctggaatcaattggactttcaccccactaggagcatcaacgatggcggagtagactgtttcatcctcttcaccgacgttt |
53430687 |
T |
|
| Q |
216 |
gtaacagttctactcacattcacacttcctctcccagtgaagttggagattgctattgaaggatagttgatattggaaatatgatcaggagttgaatcct |
315 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| || || |||||||||||||||||| |||| ||||||| |
|
|
| T |
53430688 |
gtaacagttctacttacattcacacttcctatcccagtgaagttggagattgctatggaagggtaattaatattggaaatatgatcacgagtcgaatcct |
53430787 |
T |
|
| Q |
316 |
tagggcaactgaaactaccagggacggtttttgagatagccttaattgtggttgtattgtatcctaggtaacacaagtagttcaagtagtcaatggtgct |
415 |
Q |
| |
|
||||||| ||||| || ||||||| |||||||| ||| ||||||| || ||||| || ||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
53430788 |
tagggcagttgaaattatcagggacagtttttgaaataaccttaatagttgttgtgttatatcctatgtaacacaagaagttcaagtagtcaatggtgct |
53430887 |
T |
|
| Q |
416 |
ggtttcaaaaactagccctggttggaatgattcag |
450 |
Q |
| |
|
||||||| |||| || |||||| || ||||||||| |
|
|
| T |
53430888 |
ggtttcataaacaagacctggtcggtatgattcag |
53430922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 449
Target Start/End: Complemental strand, 48375328 - 48374895
Alignment:
| Q |
16 |
tatatttatcatttctccatgtaatggatccaaagagatcatcgttcagcgggattaaagt-gtaggagaaaataacttggtagcttannnnnnngctac |
114 |
Q |
| |
|
|||||||| | || |||||||||||||||||||| ||||| || |||| || | ||||||| |||| |||||||| ||||||||||| | | |
|
|
| T |
48375328 |
tatatttaccgttactccatgtaatggatccaaacagatcttccttcaacgaggttaaagtagtag-agaaaatagcttggtagctttgttttttattgc |
48375230 |
T |
|
| Q |
115 |
tttttgtaaattggagtttctctggaatcaattggactttcactccactaggagcatcaacgatggcggagtagactgtttcatcctcttcaccaacatt |
214 |
Q |
| |
|
||||||| ||||| |||||||||||||||| || |||||||| ||||||||||||| ||| ||||| |||||| || |||||||||||| ||||| || |
|
|
| T |
48375229 |
tttttgtgaattgtagtttctctggaatcagctgaactttcacaccactaggagcattaactatggcagagtaggctacttcatcctcttcgccaacgtt |
48375130 |
T |
|
| Q |
215 |
tgtaacagttctactcacattcacacttcctctcccagtgaagttggagattgctattgaaggatagttgatattggaaatatgatcaggagttgaatcc |
314 |
Q |
| |
|
||||||||||||||||||||||||| || || |||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
48375129 |
tgtaacagttctactcacattcacagtttctttcccagtgaagttggaaattgctatggaaggataattgatattggaaatatgatcaggagttgattcc |
48375030 |
T |
|
| Q |
315 |
ttagggcaactgaaactaccagggacggtttttgagatagccttaattgtggttgtattgtatcctaggtaacacaagtagttcaagtagtcaatggtgc |
414 |
Q |
| |
|
|| ||||| ||||| || ||||||| |||||||| ||| ||||||| |||||||| |||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
48375029 |
ttggggcagttgaaagtatcagggacagtttttgaaataaccttaatagtggttgtgttgtatcctatgtaacacaagtaattcaagtagtcaatggtgc |
48374930 |
T |
|
| Q |
415 |
tggtttcaaaaactagccctggttggaatgattca |
449 |
Q |
| |
|
| |||||| |||| || |||||||||||||||||| |
|
|
| T |
48374929 |
tagtttcataaacgagacctggttggaatgattca |
48374895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 79 - 450
Target Start/End: Original strand, 26094938 - 26095309
Alignment:
| Q |
79 |
aggagaaaataacttggtagcttannnnnnngctactttttgtaaattggagtttctctggaatcaattggactttcactccactaggagcatcaacgat |
178 |
Q |
| |
|
|||||||||||||||| |||||| ||| |||||||||||||| || ||||| |||||||| ||||||||||| ||||| ||||||| |||| |
|
|
| T |
26094938 |
aggagaaaataacttgatagctttgttttttgcttctttttgtaaattgaagcttctccggaatcaactggactttcaccccactcggagcattgacgac |
26095037 |
T |
|
| Q |
179 |
ggcggagtagactgtttcatcctcttcaccaacatttgtaacagttctactcacattcacacttcctctcccagtgaagttggagattgctattgaagga |
278 |
Q |
| |
|
||| ||||||||| |||| ||||||||||| || ||||||||| ||||||| |||||||| |||| ||||| |||||| |||||||| || ||||| |
|
|
| T |
26095038 |
ggctgagtagactatttcctcctcttcaccgacgtttgtaacaattctactgacattcaccgatcctttcccaccgaagttagagattgcgatggaaggg |
26095137 |
T |
|
| Q |
279 |
tagttgatattggaaatatgatcaggagttgaatccttagggcaactgaaactaccagggacggtttttgagatagccttaattgtggttgtattgtatc |
378 |
Q |
| |
|
|| ||||||||||||||||||||| | || |||||||||||||| |||||||| ||||||| |||||||| ||| ||||||| |||||||| || |||| |
|
|
| T |
26095138 |
taattgatattggaaatatgatcacgcgtcgaatccttagggcagttgaaactatcagggacagtttttgaaataaccttaatggtggttgtgttatatc |
26095237 |
T |
|
| Q |
379 |
ctaggtaacacaagtagttcaagtagtcaatggtgctggtttcaaaaactagccctggttggaatgattcag |
450 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| || ||||| |
|
|
| T |
26095238 |
ctatataacacaagaagttcaagtagtcaatggtgctggtttcataaacgagccctggttggagtggttcag |
26095309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 131 - 450
Target Start/End: Original strand, 53307443 - 53307762
Alignment:
| Q |
131 |
tttctctggaatcaattggactttcactccactaggagcatcaacgatggcggagtagactgtttcatcctcttcaccaacatttgtaacagttctactc |
230 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| | |||||||| |||||||| ||||||| |||||||||||||||| || ||||| ||| |||| ||| |
|
|
| T |
53307443 |
tttctctggaatcaattggattttcaccccattgggagcatcgacgatggccatgtagactatttcatcctcttcaccgacttttgtgacaattctgctc |
53307542 |
T |
|
| Q |
231 |
acattcacacttcctctcccagtgaagttggagattgctattgaaggatagttgatattggaaatatgatcaggagttgaatccttagggcaactgaaac |
330 |
Q |
| |
|
|||||| || || | ||| ||||||||||||||||||| ||||| |||||||| || || | ||||||| |||||||||||| ||||| |||||| |
|
|
| T |
53307543 |
acattctttgtttctttaccaatgaagttggagattgctatggaagggtagttgatgttcgagacatgatcaatagttgaatccttggggcagttgaaac |
53307642 |
T |
|
| Q |
331 |
taccagggacggtttttgagatagccttaattgtggttgtattgtatcctaggtaacacaagtagttcaagtagtcaatggtgctggtttcaaaaactag |
430 |
Q |
| |
|
|| ||||| ||||||| |||||| ||| | ||||||||||| |||||| ||||||||||||||| | ||||||||||||||| |||||| ||||||| |
|
|
| T |
53307643 |
tatcaggggcggttttagagataatcttcaccgtggttgtattcaatcctatgtaacacaagtagtttaggtagtcaatggtgctagtttcataaactag |
53307742 |
T |
|
| Q |
431 |
ccctggttggaatgattcag |
450 |
Q |
| |
|
||| |||||||||| ||||| |
|
|
| T |
53307743 |
cccgggttggaatggttcag |
53307762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 53319434 - 53319607
Alignment:
| Q |
16 |
tatatttatcatttctccatgtaatggatccaaagagatcatcgttcagcgggattaaagtgt--aggagaaaataacttggtagcttannnnnnngcta |
113 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||| | ||| || |||| | | ||||||||| |||||||||||| ||||||||||| |||| |
|
|
| T |
53319434 |
tatatttaccattactccatgtaatggatccaaacaaatcttccttcattgaggttaaagtgtggaggagaaaataatttggtagcttagtgttttgcta |
53319533 |
T |
|
| Q |
114 |
ctttttgtaaattggagtttctctggaatcaattggactttcactccactaggagcatcaacgatggcggagta |
187 |
Q |
| |
|
||| ||||||||| ||||| ||||||||||| | ||||||||| || | |||||||||| |||| |||||| |
|
|
| T |
53319534 |
ttttctgtaaattgaagtttatctggaatcaagtcgactttcaccccgttgggagcatcaataatggaggagta |
53319607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University