View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16521_high_25 (Length: 464)

Name: NF16521_high_25
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16521_high_25
NF16521_high_25
[»] chr4 (10 HSPs)
chr4 (196-450)||(11778456-11778710)
chr4 (191-392)||(11797084-11797286)
chr4 (1-139)||(11778955-11779093)
chr4 (9-152)||(11797803-11797947)
chr4 (1-109)||(11675910-11676018)
chr4 (1-109)||(11684189-11684297)
chr4 (1-141)||(11701770-11701911)
chr4 (9-130)||(11695984-11696106)
chr4 (195-269)||(11695765-11695839)
chr4 (197-329)||(11701497-11701626)
[»] scaffold0294 (2 HSPs)
scaffold0294 (1-141)||(16415-16556)
scaffold0294 (196-269)||(15841-15914)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 196 - 450
Target Start/End: Complemental strand, 11778710 - 11778456
Alignment:
Q  196 gtacctatgataaaccaagcggatagccaataaccagattttgatctgatggcaggttgtcctctataatcaacagcaccatctacaagatcatctaatt 295  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11778710 gtacctatgataaaccaagcggatagccaataaccagatttggatctgatggcaggttgtcctctataatcaacagcaccatctacaagatcagctaatt 11778611  T
Q  296 gagcttctagcaaaacttcattgtattcctccattgaacgaaattttcttcttcaataaaaatgagttgtttgcgtttatgtattcattacttcttggcc 395  Q
     ||| |||| |||||| ||||||||||| ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  11778610 tagcatctaacaaaacatcattgtattcttccatcgaaccaaattttcttcttcaatcaaaatgagttgtttgcgtttatgtattcattacttcttggtc 11778511  T
Q  396 cataaaagttaccacacaactaacttcttgatctgtccttgttaggatggttttg 450  Q
    ||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||    
T  11778510 cataaaagtcaccactcaactaacttcttgatatgtccttgttaggatggttttg 11778456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 191 - 392
Target Start/End: Complemental strand, 11797286 - 11797084
Alignment:
Q  191 aagtagtacctatgataaaccaagcggatagccaataaccagattttgatctgatggcaggttgtcctctataatcaacagcaccatctacaagatcatc 290  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||      
T  11797286 aagtagtacctatgataaaccaagcggatcgccaataaccagatttggatctgattgcaggttgccctctataatcaacagcaccatctacaagatcagt 11797187  T
Q  291 taattgagcttctagcaaaacttcattgtattcctccattgaacgaaattttcttcttcaataaaaatgag-ttgtttgcgtttatgtattcattacttc 389  Q
    |||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||    
T  11797186 taattgagcttctaacaaaacgtcattgtattcctccattgaaccaaattttcttcttcaatgaaaatgagtttttttgcgtttatgtattcattacttc 11797087  T
Q  390 ttg 392  Q
    |||    
T  11797086 ttg 11797084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 11779093 - 11778955
Alignment:
Q  1 acattcttagcagctgttgcagtgttttgtttgagtggtcctgttagatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacct 100  Q
    |||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11779093 acattcttagcagcagttgcagtgctttgtttgagtggccctgttagatatgatatcaagtttcccttaaccccaaaatatgacatcctctctgccacct 11778994  T
Q  101 ccacacctaaattaacattcacaattcatttcaattatc 139  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  11778993 ccacacctaaattaacattcacaatttatttcagttatc 11778955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 11797947 - 11797803
Alignment:
Q  9 agcagctgttgcagtgttttgtttgagtggtcctgttagatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacctccacacct 108  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||| || || | ||| ||| ||||||| | |||||||||||| |||||||||    
T  11797947 agcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgataccctctctgccacttccacacct 11797848  T
Q  109 aaa-ttaacattcacaattcatttcaattatcattacatttagaa 152  Q
    |||  ||||||||| |||||||||||||| ||||| |||||||||    
T  11797847 aaacataacattcataattcatttcaattctcattgcatttagaa 11797803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 11676018 - 11675910
Alignment:
Q  1 acattcttagcagctgttgcagtgttttgtttgagtggtcctgttagatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacct 100  Q
    ||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || | ||||||| ||||||| | |||||||||||| |    
T  11676018 acattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgataccctctctgccactt 11675919  T
Q  101 ccacaccta 109  Q
    |||||||||    
T  11675918 ccacaccta 11675910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 11684297 - 11684189
Alignment:
Q  1 acattcttagcagctgttgcagtgttttgtttgagtggtcctgttagatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacct 100  Q
    ||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || | ||||||| ||||||| | |||||||||||| |    
T  11684297 acattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgataccctctctgccactt 11684198  T
Q  101 ccacaccta 109  Q
    |||||||||    
T  11684197 ccacaccta 11684189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 11701911 - 11701770
Alignment:
Q  1 acattcttagcagctgttgcagtgttttgtttgagtggtcctgttagatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacct 100  Q
    |||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| || || | ||| ||| ||||||| | |||||||||||| |    
T  11701911 acattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataatatgataccctctctgccactt 11701812  T
Q  101 ccacacctaaa-ttaacattcacaattcatttcaattatcat 141  Q
    |||||||||||  ||||||||| ||| ||||| |||| ||||    
T  11701811 ccacacctaaacataacattcataatccatttaaattctcat 11701770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 11696106 - 11695984
Alignment:
Q  9 agcagctgttgcagtgttttgtttgagtggtcctgttagatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacctccacacct 108  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||| || || | ||| ||| |||||||   |||||||||||  |||||||||    
T  11696106 agcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacct 11696007  T
Q  109 aaat-taacattcacaattcatt 130  Q
    |||| ||||||||||||||||||    
T  11696006 aaatataacattcacaattcatt 11695984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 11695839 - 11695765
Alignment:
Q  195 agtacctatgataaaccaagcggatagccaataaccagattttgatctgatggcaggttgtcctctataatcaac 269  Q
    |||||||||||||||||||||||||  |||||| |||| ||| ||||| | ||||||||||||||| || |||||    
T  11695839 agtacctatgataaaccaagcggatctccaatagccagttttggatctaacggcaggttgtcctctgtagtcaac 11695765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 329
Target Start/End: Complemental strand, 11701626 - 11701497
Alignment:
Q  197 tacctatgataaaccaagcggatagccaataaccagattttgatctgatggcaggttgtcctctataatcaacagcaccatctacaagatcatctaattg 296  Q
    |||||||||||||||||||||||  |||||||||||||||  | || |  ||||| |||||  | || |||||||| ||||| |||||   |  ||||||    
T  11701626 tacctatgataaaccaagcggatctccaataaccagatttaaacctaactgcaggctgtccattgtagtcaacagcgccatcaacaag---agataattg 11701530  T
Q  297 agcttctagcaaaacttcattgtattcctccat 329  Q
    |||||||| ||| ||||||||| |||| |||||    
T  11701529 agcttctaacaacacttcattggattcttccat 11701497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 16556 - 16415
Alignment:
Q  1 acattcttagcagctgttgcagtgttttgtttgagtggtcctgttagatatgatatcaagtttcccttaatcccaaaatatgacatcctctctgccacct 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| || |    
T  16556 acattcttagcagctgttgcagtgctttgtttgagtggtcctgttagatatgatatcaagtttcccttaatcccaatatatgatatcctctctgctactt 16457  T
Q  101 ccacacctaaa-ttaacattcacaattcatttcaattatcat 141  Q
    |||||||||||  ||||||||| ||| |||||||||| ||||    
T  16456 ccacacctaaacataacattcataatccatttcaattctcat 16415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 269
Target Start/End: Complemental strand, 15914 - 15841
Alignment:
Q  196 gtacctatgataaaccaagcggatagccaataaccagattttgatctgatggcaggttgtcctctataatcaac 269  Q
    ||||||||||||||||||||||||  ||| ||||||||||| || || | ||||||||||||||| || |||||    
T  15914 gtacctatgataaaccaagcggatctccagtaaccagatttggacctaacggcaggttgtcctctgtagtcaac 15841  T

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