View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16521_high_26 (Length: 456)

Name: NF16521_high_26
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16521_high_26
NF16521_high_26
[»] chr4 (15 HSPs)
chr4 (15-439)||(36823664-36824089)
chr4 (288-370)||(35958594-35958677)
chr4 (282-343)||(4191672-4191734)
chr4 (282-370)||(31005953-31006040)
chr4 (242-313)||(9843772-9843842)
chr4 (282-343)||(50396647-50396707)
chr4 (320-372)||(53626747-53626800)
chr4 (282-310)||(2980580-2980608)
chr4 (286-371)||(7368102-7368189)
chr4 (282-370)||(7749132-7749219)
chr4 (285-345)||(9680600-9680660)
chr4 (282-369)||(30207620-30207707)
chr4 (282-310)||(47970251-47970279)
chr4 (283-370)||(49219073-49219161)
chr4 (287-339)||(54392899-54392950)
[»] chr1 (9 HSPs)
chr1 (282-370)||(17269183-17269272)
chr1 (282-370)||(15579416-15579504)
chr1 (320-370)||(25006082-25006133)
chr1 (291-369)||(49517012-49517091)
chr1 (285-365)||(40304107-40304188)
chr1 (282-347)||(45107556-45107620)
chr1 (282-310)||(6110273-6110301)
chr1 (282-310)||(13037797-13037825)
chr1 (282-310)||(39339856-39339884)
[»] chr7 (15 HSPs)
chr7 (282-370)||(5369739-5369826)
chr7 (286-347)||(35536044-35536105)
chr7 (285-348)||(39539832-39539895)
chr7 (287-348)||(27121657-27121718)
chr7 (282-370)||(27492728-27492817)
chr7 (282-370)||(28340892-28340981)
chr7 (320-369)||(1417235-1417285)
chr7 (282-348)||(33894556-33894621)
chr7 (282-343)||(3241374-3241435)
chr7 (320-372)||(6263409-6263462)
chr7 (330-370)||(22759167-22759208)
chr7 (288-348)||(2012685-2012745)
chr7 (288-348)||(2030648-2030708)
chr7 (282-346)||(30496637-30496701)
chr7 (278-310)||(35809013-35809045)
[»] chr2 (11 HSPs)
chr2 (282-348)||(28902010-28902076)
chr2 (282-366)||(35755554-35755639)
chr2 (269-370)||(18066049-18066150)
chr2 (282-345)||(18884814-18884878)
chr2 (320-370)||(11513869-11513920)
chr2 (293-370)||(656825-656903)
chr2 (288-365)||(29430695-29430772)
chr2 (282-347)||(3673740-3673805)
chr2 (330-370)||(25800810-25800851)
chr2 (282-310)||(25609729-25609757)
chr2 (282-310)||(41033059-41033087)
[»] chr6 (10 HSPs)
chr6 (283-348)||(10452431-10452496)
chr6 (285-371)||(29274276-29274363)
chr6 (282-370)||(4006647-4006736)
chr6 (282-312)||(2514635-2514665)
chr6 (282-339)||(34405038-34405095)
chr6 (282-310)||(4003709-4003737)
chr6 (282-310)||(4247743-4247771)
chr6 (331-370)||(24838791-24838831)
chr6 (282-310)||(31461611-31461639)
chr6 (282-310)||(31668794-31668822)
[»] chr5 (9 HSPs)
chr5 (269-314)||(42849885-42849929)
chr5 (320-370)||(12975318-12975369)
chr5 (282-348)||(29588813-29588878)
chr5 (282-348)||(31030201-31030265)
chr5 (282-343)||(37611269-37611328)
chr5 (282-343)||(37787999-37788058)
chr5 (282-310)||(7096236-7096264)
chr5 (282-310)||(13224362-13224390)
chr5 (282-310)||(20982244-20982272)
[»] scaffold0024 (1 HSPs)
scaffold0024 (282-370)||(27509-27598)
[»] chr8 (14 HSPs)
chr8 (290-370)||(1470904-1470985)
chr8 (282-370)||(4558731-4558820)
chr8 (282-346)||(10076349-10076412)
chr8 (282-345)||(8536123-8536185)
chr8 (320-370)||(9834837-9834888)
chr8 (282-371)||(12361125-12361215)
chr8 (282-348)||(3645887-3645953)
chr8 (282-348)||(40868208-40868272)
chr8 (285-372)||(11795028-11795116)
chr8 (289-346)||(13561385-13561442)
chr8 (282-370)||(31884527-31884616)
chr8 (282-339)||(35534941-35534998)
chr8 (282-310)||(5290574-5290602)
chr8 (285-371)||(28769386-28769473)
[»] chr3 (7 HSPs)
chr3 (288-348)||(32703077-32703137)
chr3 (281-348)||(1395603-1395670)
chr3 (282-348)||(41028922-41028988)
chr3 (285-347)||(51278229-51278291)
chr3 (283-312)||(23808337-23808366)
chr3 (282-347)||(33307652-33307717)
chr3 (242-310)||(5430920-5430987)
[»] scaffold0590 (1 HSPs)
scaffold0590 (282-310)||(1183-1211)
[»] scaffold0275 (1 HSPs)
scaffold0275 (282-310)||(2764-2792)


Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 15 - 439
Target Start/End: Original strand, 36823664 - 36824089
Alignment:
Q  15 cacagacttaaatgttataaaatgatgttaaagttatattgattcatcaaagacatgcagcaatcccatttactccnnnnnnnctaattcattaattctt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||       |||||| ||||||||||    
T  36823664 cacagacttaaatgttataaaatgatgttaaagttatattgattcatcgaagacatgcaccaatcccatttactccaaaaaa-ctaattgattaattctt 36823762  T
Q  115 tcttatagttgtaa--------aagttgtgccttaatcctacatagaaacatgattctggctggctctatttcattaagccactatagtacatactacat 206  Q
    ||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36823763 tcttatagttgtaaatcagtaaaagttgtgccttaatcctacatagaaacatgattctggctggctctatttcattaagccactatagtacatactacat 36823862  T
Q  207 agttaccctccttttctagtctaacttctgtgttccctgtttagataaatagcttaactaagagcttatggcataaagtgcttatgtataagctatttct 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36823863 agttaccctccttttctagtctaacttctgtgttccctgtttagataaatagcttaactaagagcttatggcataaagtgattatgtataagctatttct 36823962  T
Q  307 ataatataattataaataaaatcaaattgttttcatataagcataagctgatttcataagctattaaacaagcaactaaatattgaaaggttggttgatt 406  Q
    ||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  36823963 ataa------tataaataaaatcaaattgttttcatataagcataagctgatttcataagctattaaataagcaactaaatattgaaaagttggttgatt 36824056  T
Q  407 gagagtttgagagatgaaataacgtactcagtg 439  Q
    |||||||||||||||||||||||||||||||||    
T  36824057 gagagtttgagagatgaaataacgtactcagtg 36824089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 288 - 370
Target Start/End: Original strand, 35958594 - 35958677
Alignment:
Q  288 ttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc-ataagctgatttcataagctat 370  Q
    ||||||||||||||||||||||| |||| |  ||||||| |||||||  ||| |||||||| | |||||| |||||||||||||    
T  35958594 ttatgtataagctatttctataacataagttaaaataaagtcaaatttgttttatataagctagaagctgttttcataagctat 35958677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 4191672 - 4191734
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataa-ttataaataaaatcaaattgttttcata 343  Q
    ||||||||||||||||||||||||||||| | ||  || ||||||| ||||| ||||||||||    
T  4191672 aagtgcttatgtataagctatttctataacaaaagataaaaataaagtcaaactgttttcata 4191734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 370
Target Start/End: Original strand, 31005953 - 31006040
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataag-cataagctgatttcataagctat 370  Q
    ||||||||||||||||||||||||||||  | ||  | ||| ||||||||| |||| ||||||||| || | |||| |||||||||||||    
T  31005953 aagtgcttatgtataagctatttctata--aaaagaaaaaagaaaatcaaaatgttctcatataagccacatgctgttttcataagctat 31006040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 313
Target Start/End: Complemental strand, 9843842 - 9843772
Alignment:
Q  242 cctgtttagataaatagcttaactaagagcttatggcata-aagtgcttatgtataagctatttctataatat 313  Q
    ||||||| |||||| | ||||| |||| ||||||  |||| || |||||||||||||||||||||||||||||    
T  9843842 cctgtttggataaacaacttaaataagtgcttat--catataactgcttatgtataagctatttctataatat 9843772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 50396647 - 50396707
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcata 343  Q
    |||||||||||||||||||||| ||| || |||| ||||||| || ||||| ||||||||||    
T  50396647 aagtgcttatgtataagctattactaaaacataa-tataaattaagtcaaactgttttcata 50396707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 53626747 - 53626800
Alignment:
Q  320 aaataaaatcaaattgttttcatataagc-ataagctgatttcataagctatta 372  Q
    ||||||| ||||| ||||||||||||||| |||||||| |||||||||| ||||    
T  53626747 aaataaattcaaaatgttttcatataagctataagctgttttcataagcgatta 53626800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Complemental strand, 2980608 - 2980580
Alignment:
Q  282 aagtgcttatgtataagctatttctataa 310  Q
    |||||||||||||||||||||||||||||    
T  2980608 aagtgcttatgtataagctatttctataa 2980580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 371
Target Start/End: Complemental strand, 7368189 - 7368102
Alignment:
Q  286 gcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc--ataagctgatttcataagctatt 371  Q
    ||||||| |||| |||||||||| ||| ||    ||||||| |||||||||||||||||||||  ||||| || || |||||||||||    
T  7368189 gcttatgaataaactatttctatgataaaaagtaaaataaagtcaaattgttttcatataagcttataagttgtttccataagctatt 7368102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 370
Target Start/End: Complemental strand, 7749219 - 7749132
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagcataagctgatttcataagctat 370  Q
    ||||| ||||||||| ||||||||||||||| ||    |||||||||| || | |||| |||||| | ||| |||||||||||||||||    
T  7749219 aagtgtttatgtatacgctatttctataataaaagagaaaataaaatcgaactatttttatataaac-taaactgatttcataagctat 7749132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 9680600 - 9680660
Alignment:
Q  285 tgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatata 345  Q
    ||||||||||||||||||||| |||||| ||    ||||||| |||||||||| |||||||    
T  9680600 tgcttatgtataagctatttcgataataaaagataaaataaagtcaaattgttctcatata 9680660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 369
Target Start/End: Complemental strand, 30207707 - 30207620
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc-ataagctgatttcataagcta 369  Q
    ||||||||||||||| | || |||||||| | ||  |||||  |||||||| ||||||||||||||| ||||| || ||||||||||||    
T  30207707 aagtgcttatgtatatgttagttctataacaaaaa-ataaaataaatcaaactgttttcatataagctataagttgttttcataagcta 30207620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Original strand, 47970251 - 47970279
Alignment:
Q  282 aagtgcttatgtataagctatttctataa 310  Q
    |||||||||||||||||||||||||||||    
T  47970251 aagtgcttatgtataagctatttctataa 47970279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 370
Target Start/End: Original strand, 49219073 - 49219161
Alignment:
Q  283 agtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc-ataagctgatttcataagctat 370  Q
    |||| ||| ||||||| ||||||||||| | |||   ||||||| ||||||| ||||||||||||| ||||| || |||||||| ||||    
T  49219073 agtggttaggtataagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcataaactat 49219161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 54392950 - 54392899
Alignment:
Q  287 cttatgtataagctatttctataatataattataaataaaatcaaattgtttt 339  Q
    |||||||||||||||||||||||||| ||  ||||||||| | ||||||||||    
T  54392950 cttatgtataagctatttctataata-aaaaataaataaagttaaattgtttt 54392899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 370
Target Start/End: Original strand, 17269183 - 17269272
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc-ataagctgatttcataagctat 370  Q
    ||||||||||||||||| |||||||| || | || |  ||||||| ||||||||||||||||||||| ||||| || |||||||||||||    
T  17269183 aagtgcttatgtataagttatttctagaacaaaagtgaaaataaagtcaaattgttttcatataagcaataagttgttttcataagctat 17269272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 370
Target Start/End: Original strand, 15579416 - 15579504
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc-ataagctgatttcataagctat 370  Q
    |||||||||||||||||||||||||||||   || |  |||| |||||||||||||||||| ||||| |||||||| | || ||||||||    
T  15579416 aagtgcttatgtataagctatttctataactaaagttcaaat-aaatcaaattgttttcatgtaagctataagctgttctcgtaagctat 15579504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 25006133 - 25006082
Alignment:
Q  320 aaataaaatcaaattgttttcatataagc-ataagctgatttcataagctat 370  Q
    ||||||| ||||||||||||||||||||| ||||| || |||||||||||||    
T  25006133 aaataaagtcaaattgttttcatataagctataagttgttttcataagctat 25006082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 369
Target Start/End: Original strand, 49517012 - 49517091
Alignment:
Q  291 tgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc-ataagctgatttcataagcta 369  Q
    |||||||| ||||||||||| | ||    ||||||| ||||||||||||||| ||||| |||||||| ||||||||||||    
T  49517012 tgtataagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcataagcta 49517091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 365
Target Start/End: Complemental strand, 40304188 - 40304107
Alignment:
Q  285 tgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataag-cataagctgatttcataa 365  Q
    |||||| ||||||||||||| ||||| | ||    ||||||||||| ||||||||||||||||  |||||||| ||||||||    
T  40304188 tgcttaggtataagctatttatataacaaaagataaaataaaatcacattgttttcatataagttataagctgttttcataa 40304107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 45107556 - 45107620
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataag 347  Q
    |||||||||| |||||||||||||||||| | || || ||||||| ||||| | ||||||||||||    
T  45107556 aagtgcttatctataagctatttctataagaaaaata-aaataaagtcaaactattttcatataag 45107620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Complemental strand, 6110301 - 6110273
Alignment:
Q  282 aagtgcttatgtataagctatttctataa 310  Q
    |||||||||||||||||||||||||||||    
T  6110301 aagtgcttatgtataagctatttctataa 6110273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Original strand, 13037797 - 13037825
Alignment:
Q  282 aagtgcttatgtataagctatttctataa 310  Q
    |||||||||||||||||||||||||||||    
T  13037797 aagtgcttatgtataagctatttctataa 13037825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Original strand, 39339856 - 39339884
Alignment:
Q  282 aagtgcttatgtataagctatttctataa 310  Q
    |||||||||||||||||||||||||||||    
T  39339856 aagtgcttatgtataagctatttctataa 39339884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 282 - 370
Target Start/End: Complemental strand, 5369826 - 5369739
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc-ataagctgatttcataagctat 370  Q
    |||||||||||||||||||| |||||||| | ||  || |||||| ||||| |||||||||||| || |||||||| |||||||||||||    
T  5369826 aagtgcttatgtataagctaattctataaaaaaa--attaataaagtcaaactgttttcatatatgctataagctgttttcataagctat 5369739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 35536044 - 35536105
Alignment:
Q  286 gcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataag 347  Q
    ||||||||||||||||||||||||| ||||    ||||||| ||||||||||||||||||||    
T  35536044 gcttatgtataagctatttctataacataagataaaataaagtcaaattgttttcatataag 35536105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 348
Target Start/End: Complemental strand, 39539895 - 39539832
Alignment:
Q  285 tgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc 348  Q
    ||||| ||||||||||||||| |||||| || |  ||||||| |||||||||||||||||||||    
T  39539895 tgcttttgtataagctatttcgataataaaagtgaaaataaattcaaattgttttcatataagc 39539832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 27121718 - 27121657
Alignment:
Q  287 cttatgtataagctatttctataatataattataaa-taaaatcaaattgttttcatataagc 348  Q
    |||||||||||| ||||||||||||| ||| ||||| |||| |||||||||||||||||||||    
T  27121718 cttatgtataagatatttctataata-aatgataaaataaagtcaaattgttttcatataagc 27121657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 370
Target Start/End: Original strand, 27492728 - 27492817
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataag-cataagctgatttcataagctat 370  Q
    |||| ||||||||||| |||||||||||| | || |  ||||||||||||| | ||||||||||||  ||||| || |||||||||||||    
T  27492728 aagttcttatgtataaactatttctataacaaaagttcaaataaaatcaaacttttttcatataagtaataagatgttttcataagctat 27492817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 370
Target Start/End: Complemental strand, 28340981 - 28340892
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc-ataagctgatttcataagctat 370  Q
    |||||||||| |||| ||||||| ||||||| ||    |||| || |||||||||| |||||||||| |||||||| |||||||||||||    
T  28340981 aagtgcttatctatatgctatttttataataaaagatgaaatgaagtcaaattgttgtcatataagctataagctgttttcataagctat 28340892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 1417235 - 1417285
Alignment:
Q  320 aaataaaatcaaattgttttcatataagc-ataagctgatttcataagcta 369  Q
    ||||||| ||||||||||||||||||||| ||||| || ||||||||||||    
T  1417235 aaataaagtcaaattgttttcatataagcaataagttgttttcataagcta 1417285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 33894556 - 33894621
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc 348  Q
    ||||||||||||||||||||||||||||| | ||  |||||  || ||||| |||||||||||||||    
T  33894556 aagtgcttatgtataagctatttctataaca-aaagataaaataagtcaaactgttttcatataagc 33894621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 343
Target Start/End: Original strand, 3241374 - 3241435
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcata 343  Q
    |||||||||| || ||||||||||||||| | ||| | ||||||| ||||| ||||||||||    
T  3241374 aagtgcttatatagaagctatttctataacaaaataaaaaataaagtcaaactgttttcata 3241435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 6263462 - 6263409
Alignment:
Q  320 aaataaaatcaaattgttttcatataagc-ataagctgatttcataagctatta 372  Q
    |||| |||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  6263462 aaattaaataaaatggttttcatataagttataagctgatttcataagctatta 6263409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 22759167 - 22759208
Alignment:
Q  330 aaattgttttcatataagc-ataagctgatttcataagctat 370  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  22759167 aaattgttttcatataagctaaaagctgatttcataagctat 22759208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 348
Target Start/End: Complemental strand, 2012745 - 2012685
Alignment:
Q  288 ttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc 348  Q
    |||||||||||||||||||||   | |||  |||||||  |||||||||||||||||||||    
T  2012745 ttatgtataagctatttctatgccaaaatattaaataatgtcaaattgttttcatataagc 2012685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 2030648 - 2030708
Alignment:
Q  288 ttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc 348  Q
    |||||||||||||||||||||   | |||  |||||||  |||||||||||||||||||||    
T  2030648 ttatgtataagctatttctatgccaaaatattaaataatgtcaaattgttttcatataagc 2030708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 30496637 - 30496701
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataa 346  Q
    ||||| |||||||||| |||||||||||| | |||   ||||||| ||||||||||||| |||||    
T  30496637 aagtgtttatgtataaactatttctataacaaaatataaaataaagtcaaattgttttcgtataa 30496701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 35809045 - 35809013
Alignment:
Q  278 cataaagtgcttatgtataagctatttctataa 310  Q
    ||||||||| |||||||||||||||||||||||    
T  35809045 cataaagtgtttatgtataagctatttctataa 35809013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 28902010 - 28902076
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc 348  Q
    ||||||||||||||||||||||| ||||| |||| |  ||||||||| ||| |||||||||||||||    
T  28902010 aagtgcttatgtataagctatttttataacataagttaaaataaaattaaactgttttcatataagc 28902076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 282 - 366
Target Start/End: Complemental strand, 35755639 - 35755554
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc-ataagctgatttcataag 366  Q
    ||||| ||||||||||||||||||||||||  |||   ||||||| ||||||||||||||| ||||| ||||| || |||||||||    
T  35755639 aagtgtttatgtataagctatttctataatcaaatagaaaataaagtcaaattgttttcatgtaagctataagttgttttcataag 35755554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 370
Target Start/End: Original strand, 18066049 - 18066150
Alignment:
Q  269 agcttatggcataaagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc-ataagctgatttcataagc 367  Q
    ||||||| |||||| | ||| ||||| |||||||||||| | || |||   ||||||| | ||||||||||||||||||| |||||||| ||||||||||    
T  18066049 agcttatagcataa-gcgctcatgtagaagctatttctacagtaaaatatgaaataaagttaaattgttttcatataagctataagctgttttcataagc 18066147  T
Q  368 tat 370  Q
    |||    
T  18066148 tat 18066150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 345
Target Start/End: Original strand, 18884814 - 18884878
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaa-taaaatcaaattgttttcatata 345  Q
    ||||||| ||||||||| ||||||||||| | || |||||| |||||||||| ||||||||||||    
T  18884814 aagtgctcatgtataagttatttctataaaaaaaatataaaataaaatcaaactgttttcatata 18884878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 11513869 - 11513920
Alignment:
Q  320 aaataaaatcaaattgttttcatataagc-ataagctgatttcataagctat 370  Q
    ||||||| ||||||||||||||||||||| ||||| || |||||||||||||    
T  11513869 aaataaagtcaaattgttttcatataagctataagttgttttcataagctat 11513920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 656903 - 656825
Alignment:
Q  293 tataagctatttctataatataattataaataaaatcaaattgttttcatataagc-ataagctgatttcataagctat 370  Q
    |||||||||||||||||| | ||    ||||| ||||||||||||||| |||||||  |||| ||||||||||||||||    
T  656903 tataagctatttctataacaaaagataaaatataatcaaattgttttcgtataagctgtaagttgatttcataagctat 656825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 365
Target Start/End: Original strand, 29430695 - 29430772
Alignment:
Q  288 ttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc-ataagctgatttcataa 365  Q
    ||||||||||||||||||||||| | || | |||||||| ||||| ||||||| ||||||| |||||||| | ||||||    
T  29430695 ttatgtataagctatttctataacaaaagt-taaataaagtcaaactgttttcttataagctataagctgttctcataa 29430772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 3673740 - 3673805
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataag 347  Q
    |||||||||||||| || ||||||||||| | |||   ||||||| | ||||||||||||||||||    
T  3673740 aagtgcttatgtattagttatttctataacaaaatataaaataaagttaaattgttttcatataag 3673805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 370
Target Start/End: Original strand, 25800810 - 25800851
Alignment:
Q  330 aaattgttttcatataagc-ataagctgatttcataagctat 370  Q
    ||||||||||||||||||| |||||||| |||||||||||||    
T  25800810 aaattgttttcatataagctataagctgttttcataagctat 25800851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Original strand, 25609729 - 25609757
Alignment:
Q  282 aagtgcttatgtataagctatttctataa 310  Q
    |||||||||||||||||||||||||||||    
T  25609729 aagtgcttatgtataagctatttctataa 25609757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Complemental strand, 41033087 - 41033059
Alignment:
Q  282 aagtgcttatgtataagctatttctataa 310  Q
    |||||||||||||||||||||||||||||    
T  41033087 aagtgcttatgtataagctatttctataa 41033059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 348
Target Start/End: Complemental strand, 10452496 - 10452431
Alignment:
Q  283 agtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc 348  Q
    |||||||||||||||||||||||||||| | |||   ||||||||||||| | |||||||||||||    
T  10452496 agtgcttatgtataagctatttctataacaaaatataaaataaaatcaaactattttcatataagc 10452431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 371
Target Start/End: Complemental strand, 29274363 - 29274276
Alignment:
Q  285 tgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc-ataagctgatttcataagctatt 371  Q
    |||||||||||||||||||||||||  | ||    ||||||| ||||||||||||||||||||| |||| ||| ||||||||| ||||    
T  29274363 tgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcataagatatt 29274276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 370
Target Start/End: Original strand, 4006647 - 4006736
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattat-aaataaaatcaaattgttttcatataagc-ataagctgatttcataagctat 370  Q
    ||||||||||| ||||| ||||||||||| | ||| || ||||||| |||||||||||| |||||||| ||||| || |||||||||||||    
T  4006647 aagtgcttatgcataagatatttctataaca-aatgataaaataaagtcaaattgtttttatataagctataagttgttttcataagctat 4006736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 312
Target Start/End: Original strand, 2514635 - 2514665
Alignment:
Q  282 aagtgcttatgtataagctatttctataata 312  Q
    |||||||||||||||||||||||||||||||    
T  2514635 aagtgcttatgtataagctatttctataata 2514665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 34405038 - 34405095
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgtttt 339  Q
    ||||| |||| |||||||||||||||||||| || |  ||||||| ||||||||||||    
T  34405038 aagtgtttatctataagctatttctataataaaagttaaaataaagtcaaattgtttt 34405095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Complemental strand, 4003737 - 4003709
Alignment:
Q  282 aagtgcttatgtataagctatttctataa 310  Q
    |||||||||||||||||||||||||||||    
T  4003737 aagtgcttatgtataagctatttctataa 4003709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Complemental strand, 4247771 - 4247743
Alignment:
Q  282 aagtgcttatgtataagctatttctataa 310  Q
    |||||||||||||||||||||||||||||    
T  4247771 aagtgcttatgtataagctatttctataa 4247743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 370
Target Start/End: Complemental strand, 24838831 - 24838791
Alignment:
Q  331 aattgttttcatataagc-ataagctgatttcataagctat 370  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  24838831 aattattttcatataagctataagctgatttcataagctat 24838791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Original strand, 31461611 - 31461639
Alignment:
Q  282 aagtgcttatgtataagctatttctataa 310  Q
    |||||||||||||||||||||||||||||    
T  31461611 aagtgcttatgtataagctatttctataa 31461639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Complemental strand, 31668822 - 31668794
Alignment:
Q  282 aagtgcttatgtataagctatttctataa 310  Q
    |||||||||||||||||||||||||||||    
T  31668822 aagtgcttatgtataagctatttctataa 31668794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 42849885 - 42849929
Alignment:
Q  269 agcttatggcataaagtgcttatgtataagctatttctataatata 314  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  42849885 agcttatggcataa-gtgcttatgtataagctatttctataatata 42849929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 12975318 - 12975369
Alignment:
Q  320 aaataaaatcaaattgttttcatataagc-ataagctgatttcataagctat 370  Q
    ||||||||||||||||||||||||||||| ||||||||  ||||||||||||    
T  12975318 aaataaaatcaaattgttttcatataagctataagctgtgttcataagctat 12975369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 29588813 - 29588878
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc 348  Q
    ||||||||||||||||||||||||||||| | || ||||||  ||   |||||||||||||||||||    
T  29588813 aagtgcttatgtataagctatttctataaca-aaatataaaataatgaaaattgttttcatataagc 29588878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 31030265 - 31030201
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc 348  Q
    ||||||||||||||||||||||| ||||| | |||| |||||||| |||| ||||| ||||||||||    
T  31030265 aagtgcttatgtataagctatttttataaca-aatt-taaataaagtcaagttgttatcatataagc 31030201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 37611328 - 37611269
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcata 343  Q
    ||||||||||||| ||||||||||||||||| ||    |||| |||||||||||||||||||    
T  37611328 aagtgcttatgtaaaagctatttctataataaaa--gaaaatcaaatcaaattgttttcata 37611269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 37788058 - 37787999
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcata 343  Q
    ||||||||||||| ||||||||||||||||| ||    |||| |||||||||||||||||||    
T  37788058 aagtgcttatgtaaaagctatttctataataaaa--gaaaatcaaatcaaattgttttcata 37787999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Complemental strand, 7096264 - 7096236
Alignment:
Q  282 aagtgcttatgtataagctatttctataa 310  Q
    |||||||||||||||||||||||||||||    
T  7096264 aagtgcttatgtataagctatttctataa 7096236  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Original strand, 13224362 - 13224390
Alignment:
Q  282 aagtgcttatgtataagctatttctataa 310  Q
    |||||||||||||||||||||||||||||    
T  13224362 aagtgcttatgtataagctatttctataa 13224390  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Complemental strand, 20982272 - 20982244
Alignment:
Q  282 aagtgcttatgtataagctatttctataa 310  Q
    |||||||||||||||||||||||||||||    
T  20982272 aagtgcttatgtataagctatttctataa 20982244  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 370
Target Start/End: Original strand, 27509 - 27598
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc-ataagctgatttcataagctat 370  Q
    ||||||||||||||||| ||||||||||| | ||    ||||||| ||||||||||||||||||| | ||||| || |||||||| ||||    
T  27509 aagtgcttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcataaactat 27598  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 370
Target Start/End: Complemental strand, 1470985 - 1470904
Alignment:
Q  290 atgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc-ataagctgatttcataagctat 370  Q
    ||||||||||||||||||||||| ||    ||||||| |||||||  |||||||||||| |||||||| |||||||| ||||    
T  1470985 atgtataagctatttctataataaaagataaaataaagtcaaattactttcatataagctataagctgttttcataacctat 1470904  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 370
Target Start/End: Original strand, 4558731 - 4558820
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc-ataagctgatttcataagctat 370  Q
    ||||| ||||||||||||||||||||||||| ||    ||||||| | ||||| |||||||||| || |||||||| || ||||||||||    
T  4558731 aagtgtttatgtataagctatttctataataaaagataaaataaagttaaattattttcatatatgctataagctgtttccataagctat 4558820  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 10076412 - 10076349
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataa 346  Q
    |||||||||||||||| |||||||||||||| ||  ||| | ||| |||||||||||||||||||    
T  10076412 aagtgcttatgtataatctatttctataataaaaaaatata-aaagtcaaattgttttcatataa 10076349  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 345
Target Start/End: Complemental strand, 8536185 - 8536123
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatata 345  Q
    ||||||||||||||||||||||||||||| | || || || | || ||||||||||||||||||    
T  8536185 aagtgcttatgtataagctatttctataaca-aaataaaagtgaagtcaaattgttttcatata 8536123  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 370
Target Start/End: Complemental strand, 9834888 - 9834837
Alignment:
Q  320 aaataaaatcaaattgttttcatataagc-ataagctgatttcataagctat 370  Q
    |||||||| |||||||||||||||||||| ||||| || |||||||||||||    
T  9834888 aaataaaaccaaattgttttcatataagctataagttgttttcataagctat 9834837  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 371
Target Start/End: Original strand, 12361125 - 12361215
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaa-taaaatcaaattgttttcatataagc-ataagctgatttcataagctatt 371  Q
    |||| ||||| |||||| ||||||||||| ||||  ||||| | || ||||||||||||||||||||| |||||||| ||||||||| ||||    
T  12361125 aagtacttatatataagttatttctataa-ataaagataaaatgaagtcaaattgttttcatataagctataagctgttttcataagttatt 12361215  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 3645953 - 3645887
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc 348  Q
    |||||||| |||||||||||||||||||| | |||   ||| ||||||||| | |||||||||||||    
T  3645953 aagtgcttgtgtataagctatttctataagaaaatataaaacaaaatcaaactattttcatataagc 3645887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 40868272 - 40868208
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc 348  Q
    ||||||||||||||||||||||||| ||| ||||  | ||||||| || ||||||||||||||||||    
T  40868272 aagtgcttatgtataagctatttctgtaa-ataa-aaaaaataaagtcgaattgttttcatataagc 40868208  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 372
Target Start/End: Original strand, 11795028 - 11795116
Alignment:
Q  285 tgcttatgtataagctatttctataatataattata-aataaaatcaaattgttttcatataagc-ataagctgatttcataagctatta 372  Q
    |||||||||||||||| ||||||| | | ||  ||| |||||| ||| | ||||||||||||||  ||||||||||||||||||||||||    
T  11795028 tgcttatgtataagctttttctatgacaaaac-atacaataaagtcacactgttttcatataagttataagctgatttcataagctatta 11795116  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 13561442 - 13561385
Alignment:
Q  289 tatgtataagctatttctataatataattataaataaaatcaaattgttttcatataa 346  Q
    |||| ||||||||||||||||| | ||   |||||||| |||||||||||||||||||    
T  13561442 tatgaataagctatttctataacagaaaattaaataaagtcaaattgttttcatataa 13561385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 370
Target Start/End: Original strand, 31884527 - 31884616
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc-ataagctgatttcataagctat 370  Q
    |||||| |||||||||| ||||||||||| | |||   |||| ||||  |||||||||||||||||| ||||  || |||||||||||||    
T  31884527 aagtgcatatgtataagttatttctataacaaaatataaaatcaaattgaattgttttcatataagctataaattgttttcataagctat 31884616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 339
Target Start/End: Complemental strand, 35534998 - 35534941
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgtttt 339  Q
    |||||||||| |||||||||||||||||||| || |  ||||||| ||||| ||||||    
T  35534998 aagtgcttatatataagctatttctataataaaagttaaaataaagtcaaactgtttt 35534941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Original strand, 5290574 - 5290602
Alignment:
Q  282 aagtgcttatgtataagctatttctataa 310  Q
    |||||||||||||||||||||||||||||    
T  5290574 aagtgcttatgtataagctatttctataa 5290602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 371
Target Start/End: Complemental strand, 28769473 - 28769386
Alignment:
Q  285 tgcttatgtataagctatttctataatataattat-aaataaaatcaaattgttttcatataagc-ataagctgatttcataagctatt 371  Q
    ||||||||||||||||||| |||||| | || ||| |||| || ||||| | ||||| ||||||| |||||||| ||||||||||||||    
T  28769473 tgcttatgtataagctattcctataaca-aactataaaattaagtcaaactattttcttataagctataagctgttttcataagctatt 28769386  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 32703077 - 32703137
Alignment:
Q  288 ttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc 348  Q
    ||||||||||||||||||||| ||| ||    ||||||| |||||||||||||||||||||    
T  32703077 ttatgtataagctatttctattataaaagataaaataaactcaaattgttttcatataagc 32703137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 1395603 - 1395670
Alignment:
Q  281 aaagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc 348  Q
    ||||||| |||||||||||||||||||||| | ||    ||||||| ||||||| |||||||||||||    
T  1395603 aaagtgcatatgtataagctatttctataacaaaagataaaataaagtcaaattattttcatataagc 1395670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 348
Target Start/End: Complemental strand, 41028988 - 41028922
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataagc 348  Q
    ||||||||||||||||||||||||||||| | ||  | ||||||| ||||  |||||||| ||||||    
T  41028988 aagtgcttatgtataagctatttctataacaaaagaaaaaataaagtcaatctgttttcaaataagc 41028922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 51278291 - 51278229
Alignment:
Q  285 tgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataag 347  Q
    |||| ||||||||||||||||||||| | |||  |||||||| ||||| ||||||||| ||||    
T  51278291 tgctaatgtataagctatttctataacaaaatattaaataaagtcaaactgttttcatttaag 51278229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 312
Target Start/End: Complemental strand, 23808366 - 23808337
Alignment:
Q  283 agtgcttatgtataagctatttctataata 312  Q
    ||||||||||||||||||||||||||||||    
T  23808366 agtgcttatgtataagctatttctataata 23808337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 33307717 - 33307652
Alignment:
Q  282 aagtgcttatgtataagctatttctataatataattataaataaaatcaaattgttttcatataag 347  Q
    ||||||||||||||||||||||||  ||| | |||   ||||||| ||||||| ||||||||||||    
T  33307717 aagtgcttatgtataagctatttcagtaacaaaatatgaaataaagtcaaattattttcatataag 33307652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 5430920 - 5430987
Alignment:
Q  242 cctgtttagataaatagcttaactaagagcttatggcataaagtgcttatgtataagctatttctataa 310  Q
    ||||||| |||||  | ||||| |||||||||||  ||||| |||||||||||||||| ||||||||||    
T  5430920 cctgtttggataagcaacttaattaagagcttatatcataa-gtgcttatgtataagccatttctataa 5430987  T

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Target: scaffold0590 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Complemental strand, 1211 - 1183
Alignment:
Q  282 aagtgcttatgtataagctatttctataa 310  Q
    |||||||||||||||||||||||||||||    
T  1211 aagtgcttatgtataagctatttctataa 1183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 310
Target Start/End: Original strand, 2764 - 2792
Alignment:
Q  282 aagtgcttatgtataagctatttctataa 310  Q
    |||||||||||||||||||||||||||||    
T  2764 aagtgcttatgtataagctatttctataa 2792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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