View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_high_29 (Length: 444)
Name: NF16521_high_29
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Original strand, 41409928 - 41410343
Alignment:
| Q |
19 |
catactactgtcagttcagttctcgtcattttctttgttattcatttggtcaaaattcaaactaggaacataaatgctttgatttttctttaattttgga |
118 |
Q |
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| T |
41409928 |
catactactgtcagttcagttctcgtcattttctttgttattcatttggtcaaaattcaaactaggaacataaatgctttgatttttctttaattttgga |
41410027 |
T |
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| Q |
119 |
gcacgtgttttgaaattgactattctgtgtttgatcattcatcatctcatgcaatgcaatgtacccagaaaacatggtcaa-------tagggtgaactg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41410028 |
gcacgtgttttgaaattgactattctgtgtttgatcattcatcatctcatgcaatgcaatgtacccagaaaacatggtcaatactcaatagggtgaactg |
41410127 |
T |
|
| Q |
212 |
aattcacgtgcgtcctatttgttaccttaaactaatgatgactagttctgatatattaatgatttggttgagtttttacctccaatcgcaagatatctcc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41410128 |
aattcacgtgcgtcctatttgttaccttaaactaatgatgactagttctgatatattaatgatttggttgagtttttacctccaatcgcaagatatctcc |
41410227 |
T |
|
| Q |
312 |
cataatatattaagtcaaggcatgtctcaaaacaaaccttgtcaagtttcactttctccacgtataccttcaggcttggttggtcaaagtcatggtttca |
411 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41410228 |
cataatatattaagtcaaggcatgtcttaaaacaaaccttgtcaagtttcactttctccacgtataccttcaggcttggttggtcaaagtcatggtttca |
41410327 |
T |
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| Q |
412 |
attttctttgaatttt |
427 |
Q |
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|||||||||||||||| |
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| T |
41410328 |
attttctttgaatttt |
41410343 |
T |
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