View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_high_33 (Length: 404)
Name: NF16521_high_33
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 388
Target Start/End: Complemental strand, 4468009 - 4467637
Alignment:
| Q |
16 |
atgaagttgggacactttgttgcatttacaagcatcatcaagatattaataggaatgatcattgggttgattctttgaaatatgatgtgattagaatgct |
115 |
Q |
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| T |
4468009 |
atgaagttgggacactttgttgcatttacaagcatcatcaagatattaataggaatgatcattgggttgattctttgaaatatgatgtgattagaatgct |
4467910 |
T |
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| Q |
116 |
gattaggggaactgattactctcattctttatgtttgcatgtgtgtgatggctcttcagagtttcatgtttactcaaagaaaagttggttgactttctgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4467909 |
gattaggggaactgattactctcattctttatgtttgcatgtgtgtgatggctcttcagagtttcatgtttactcaaagaaaagttggttgactttctgt |
4467810 |
T |
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| Q |
216 |
cctgaacaaggtgcacttgtaatcactgccggagatcaaatccaggttattttacatttttgctttctctttctacataatagtgatagtatttcaacaa |
315 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4467809 |
cctgaacaaggtgcacttgtaatcactgcgggagatcaaatccaggttattttacatttttgctttctctttctacataatagtgatagtatttcaacaa |
4467710 |
T |
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| Q |
316 |
aacaaaaaactccacctacacttttgttttaaaaatgaacaattatatatagatcttaaaaataaacaaaact |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4467709 |
aacaaaaaactccacctacacttttgttttaaaaatgaacaattatatatagatcttaaaaataaacaaaact |
4467637 |
T |
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