View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16521_high_37 (Length: 388)

Name: NF16521_high_37
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16521_high_37
NF16521_high_37
[»] chr3 (4 HSPs)
chr3 (1-379)||(2821500-2821878)
chr3 (236-321)||(48196786-48196871)
chr3 (263-353)||(46574483-46574573)
chr3 (1-34)||(2834828-2834861)
[»] chr1 (2 HSPs)
chr1 (236-321)||(23539739-23539823)
chr1 (191-320)||(40569674-40569804)
[»] chr5 (2 HSPs)
chr5 (236-321)||(16397967-16398052)
chr5 (82-196)||(7379937-7380048)
[»] chr8 (1 HSPs)
chr8 (276-354)||(10723775-10723853)
[»] chr2 (1 HSPs)
chr2 (92-196)||(15999232-15999333)
[»] scaffold0018 (1 HSPs)
scaffold0018 (194-291)||(32103-32200)
[»] chr4 (1 HSPs)
chr4 (155-232)||(42286518-42286593)


Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 2821500 - 2821878
Alignment:
Q  1 tctcagccaaccggtttcatccacccatcatttcttgattatttttgaaagctgaaaaaggaagtgtaagaatcatagaatatatcttatgatatcttta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2821500 tctcagccaaccggtttcatccacccatcatttcttgattatttttgaaagctgaaaaaggaagtgtaagaatcatagaatatatcttataatatcttta 2821599  T
Q  101 atattgtattagagtatcggaagttatttcctgtgattagtttataaccttataagagtatctcttaggattagagtttatatatcttaatattatgatt 200  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2821600 atattgtattagagtatcggaagttatttcctgcaattagtttataaccttataagagcatctcttaggattagagtttatatatcttaatattatgatt 2821699  T
Q  201 tgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2821700 tgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattca 2821799  T
Q  301 aggttcttattattttctctcattattttctttaaaattccacaacttcaacaaaggtcttgtatagtttcatctctct 379  Q
    |||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2821800 aggttcttattattttctctcattcttatctttaaaatcccacaacttcaacaaaggtcttgtatagtttcatctctct 2821878  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 321
Target Start/End: Original strand, 48196786 - 48196871
Alignment:
Q  236 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc 321  Q
    |||| ||||||| | |||||| |||| ||||||| |||| ||| ||||| ||| ||||| |||| |||||||||||||||||||||    
T  48196786 taaacagggattagggtttagtcttttgtatcaacctactatcgagtcaatataaataatattccaggttcttattattttctctc 48196871  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 353
Target Start/End: Original strand, 46574483 - 46574573
Alignment:
Q  263 gtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaaaattccacaacttcaaca 353  Q
    |||||||| ||| ||  ||||||||||||||  ||||||||||||||||||  ||||| ||| |||| | |||| |  |||||||||||||    
T  46574483 gtatcaaagtactattcagtcagtatcaatactattcaaggttcttattatcatctcttattcttttatctaaattctcacaacttcaaca 46574573  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2834861 - 2834828
Alignment:
Q  1 tctcagccaaccggtttcatccacccatcatttc 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  2834861 tctcagccaaccggtttcatccatccatcatttc 2834828  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 236 - 321
Target Start/End: Original strand, 23539739 - 23539823
Alignment:
Q  236 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc 321  Q
    |||||||||||| | ||||||||||| | ||||| |||| ||||||||| ||||||||| |||||| | |||||||||||||||||    
T  23539739 taaatagggattagggtttagccttttggatcaagctactatcaagtca-tatcaataatattcaaaggtcttattattttctctc 23539823  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 320
Target Start/End: Original strand, 40569674 - 40569804
Alignment:
Q  191 tattatgatttgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatca 290  Q
    |||| |||||||||||||||||| | |||| |  || |||| || |||||||||||| |  || ||  ||| ||||||| |||| ||  || ||||||||    
T  40569674 tattttgatttgttcttgatttaggattgagtccgtgtatcgctataaatagggattagaattgagttttttgtatcaagctactattcagccagtatca 40569773  T
Q  291 ataacatt-caaggttcttattattttctct 320  Q
    |||||||| | ||||||||||||||||||||    
T  40569774 ataacattccgaggttcttattattttctct 40569804  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 321
Target Start/End: Complemental strand, 16398052 - 16397967
Alignment:
Q  236 taaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaataacattcaaggttcttattattttctctc 321  Q
    |||||||||||| || ||||| |||||| ||||| |||| ||  | | |||||||| || |||||||||| |||||||||||||||    
T  16398052 taaatagggattagtatttagtctttgggatcaagctactattcaattagtatcaacaatattcaaggtttttattattttctctc 16397967  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 196
Target Start/End: Original strand, 7379937 - 7380048
Alignment:
Q  82 atatcttatgatatctttaatattgtattagagtatcggaagttatttcctgtgattagtttataaccttataagagtatctcttaggattagagtttat 181  Q
    ||||||||| ||| |||||||||| ||||||| ||||  ||||||||||||   ||||||||| || |||   ||||||||| || |||||| | |||||    
T  7379937 atatcttataataactttaatattatattagaatatcttaagttatttcctagaattagtttacaatctt---agagtatctattgggattaaattttat 7380033  T
Q  182 atatcttaatattat 196  Q
    ||  |||| ||||||    
T  7380034 attacttattattat 7380048  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 354
Target Start/End: Complemental strand, 10723853 - 10723775
Alignment:
Q  276 atcaagtcagtatcaataacattcaaggttcttattattttctctcattattttctttaaaattccacaacttcaacaa 354  Q
    ||||||| | ||||||||| |||||| ||||||||||||||||||| |   ||| | ||||||| ||||| ||||||||    
T  10723853 atcaagttattatcaataatattcaaagttcttattattttctctcgtccatttatctaaaattgcacaatttcaacaa 10723775  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 15999333 - 15999232
Alignment:
Q  92 atatctttaatattgtattagagtatcggaagttatttcctgtgattagtttataaccttataagagtatctcttaggattagagtttatatatcttaat 191  Q
    |||||||  ||||| ||||| ||||||  ||||||| || | |||||||||||||| ||||   ||||||||||||||||| || |||||||  |||| |    
T  15999333 atatcttcgatattatattaaagtatcttaagttatgtcatatgattagtttataatctta---gagtatctcttaggatttgattttatattacttatt 15999237  T
Q  192 attat 196  Q
    |||||    
T  15999236 attat 15999232  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 291
Target Start/End: Original strand, 32103 - 32200
Alignment:
Q  194 tatgatttgttcttgatttaaggttgaatttgtctatccctgtaaatagggatttgtgtttagcctttggtatcaaactacaatcaagtcagtatcaa 291  Q
    |||||||||||||||||| | | |||| | | | ||||||| |||||||||||| || || ||  ||| ||||||| |||| ||||||||| ||||||    
T  32103 tatgatttgttcttgattcatgattgagtctatgtatccctataaatagggattagtattcagttttttgtatcaacctactatcaagtcattatcaa 32200  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 42286593 - 42286518
Alignment:
Q  155 agagtatctcttaggattagagtttatatatcttaatattatgatttgttcttgatttaaggttgaatttgtctatcc 232  Q
    ||||||||||||||||| |||||||| || | ||| |||| ||||||| |||||||||||| |||| ||||| |||||    
T  42286593 agagtatctcttaggatcagagttta-at-tgttattattttgatttggtcttgatttaagattgagtttgtgtatcc 42286518  T

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