View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_high_41 (Length: 372)
Name: NF16521_high_41
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 8e-77; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 113 - 271
Target Start/End: Complemental strand, 32575502 - 32575342
Alignment:
| Q |
113 |
tgagtaactaaataaactgacaagcactcagccttttgtatggcttgtttatatttttctaaaatata--ctgtaaaatactgtaagtggacatccctca |
210 |
Q |
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| T |
32575502 |
tgagtaactaaataaactgacaagcactcagccttttgtatggcttgtttatatttttctaaaatatagacggtaaaatactgtaagtggacatccctca |
32575403 |
T |
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| Q |
211 |
tcccaaccaccacagtcaccatttctagttctaggcccaccatttctgtgaactctgtctt |
271 |
Q |
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| T |
32575402 |
tcccaaccaccacagtcaccatttctagttctaggcccaccatttctgtgaactctgtctt |
32575342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 350
Target Start/End: Complemental strand, 32569802 - 32569708
Alignment:
| Q |
257 |
tgtgaactctgtcttcattactcaaaa-ctattcgagcaaagagtgaaactcgttcagacattcatcttcccaacaagcggtaaatcatcgtcag |
350 |
Q |
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| T |
32569802 |
tgtgaactcggtctccattactcgacagctattcgagcaaagagtgaaactcgttgatacattcatcttcccaacaagcggcaaatcatcatcag |
32569708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 257 - 350
Target Start/End: Complemental strand, 32614680 - 32614586
Alignment:
| Q |
257 |
tgtgaactctgtcttcattactcaa-aactattcgagcaaagagtgaaactcgttcagacattcatcttcccaacaagcggtaaatcatcgtcag |
350 |
Q |
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| T |
32614680 |
tgtgaactctgtctccattactcgacaactattcgagcaaaaagtgaaactcgttgatacattcatcttcctaacaggcggcaaatcatcgtcag |
32614586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 153
Target Start/End: Complemental strand, 32570416 - 32570356
Alignment:
| Q |
92 |
aatatgagatataaacaaacatgagtaactaaataaactgacaagcactcagccttttgtat |
153 |
Q |
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| T |
32570416 |
aatatgagatacaaacaaacctgagtaactagatcaactgacatgcactc-gccttttgtat |
32570356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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