View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16521_high_47 (Length: 348)

Name: NF16521_high_47
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16521_high_47
NF16521_high_47
[»] chr7 (14 HSPs)
chr7 (1-335)||(36222173-36222507)
chr7 (1-199)||(11279538-11279736)
chr7 (10-200)||(23759608-23759797)
chr7 (12-199)||(33313052-33313239)
chr7 (1-191)||(46846320-46846511)
chr7 (12-199)||(294921-295106)
chr7 (12-199)||(3861907-3862094)
chr7 (207-329)||(36218188-36218310)
chr7 (40-199)||(6967233-6967393)
chr7 (40-199)||(17866353-17866513)
chr7 (12-72)||(23108045-23108106)
chr7 (12-77)||(23313382-23313448)
chr7 (39-107)||(24783493-24783560)
chr7 (215-271)||(35957369-35957425)
[»] chr5 (12 HSPs)
chr5 (1-191)||(33575136-33575326)
chr5 (10-199)||(15532200-15532389)
chr5 (10-194)||(15542387-15542571)
chr5 (96-199)||(26711464-26711567)
chr5 (96-199)||(26981201-26981304)
chr5 (40-102)||(26712439-26712501)
chr5 (40-102)||(26982177-26982239)
chr5 (12-194)||(11988867-11989053)
chr5 (89-199)||(22159881-22159992)
chr5 (40-107)||(7650035-7650101)
chr5 (40-116)||(34405934-34406009)
chr5 (40-191)||(14616437-14616588)
[»] chr3 (4 HSPs)
chr3 (27-200)||(22626311-22626484)
chr3 (27-199)||(11138570-11138742)
chr3 (40-199)||(39563510-39563669)
chr3 (55-160)||(20536376-20536479)
[»] chr2 (5 HSPs)
chr2 (10-199)||(31528446-31528635)
chr2 (12-199)||(13710129-13710315)
chr2 (41-189)||(31626637-31626784)
chr2 (27-200)||(40018052-40018225)
chr2 (1-100)||(16294945-16295044)
[»] chr6 (10 HSPs)
chr6 (27-199)||(13017189-13017361)
chr6 (1-191)||(22221771-22221959)
chr6 (1-191)||(22247606-22247794)
chr6 (10-88)||(30978322-30978400)
chr6 (40-199)||(14790704-14790864)
chr6 (40-199)||(14795732-14795892)
chr6 (12-75)||(15535114-15535177)
chr6 (12-73)||(16883733-16883795)
chr6 (7-73)||(11183962-11184028)
chr6 (27-73)||(15540643-15540689)
[»] chr4 (4 HSPs)
chr4 (27-199)||(12172045-12172218)
chr4 (27-199)||(2541956-2542128)
chr4 (40-116)||(647288-647363)
chr4 (40-102)||(650574-650635)
[»] scaffold0440 (1 HSPs)
scaffold0440 (1-191)||(9910-10101)
[»] chr8 (3 HSPs)
chr8 (12-193)||(12575306-12575487)
chr8 (17-77)||(41778864-41778925)
chr8 (27-75)||(14418538-14418585)
[»] scaffold0264 (1 HSPs)
scaffold0264 (1-191)||(24193-24381)
[»] chr1 (9 HSPs)
chr1 (40-201)||(10765005-10765167)
chr1 (40-199)||(13493348-13493508)
chr1 (12-77)||(34066402-34066468)
chr1 (29-194)||(1936701-1936869)
chr1 (7-76)||(8435289-8435358)
chr1 (40-191)||(13496073-13496224)
chr1 (12-78)||(16190299-16190365)
chr1 (204-271)||(18125078-18125145)
chr1 (12-71)||(23990262-23990322)
[»] scaffold0363 (1 HSPs)
scaffold0363 (27-75)||(133-180)


Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 36222507 - 36222173
Alignment:
Q  1 tcaatcttctaaaaaccaatctttctttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatccttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222507 tcaatcttctaaaaaccaatctttctttgtttttaatcagtttatgttagaaaatcaactcaactgcctagggcaccaatataaattttatacatccttt 36222408  T
Q  101 ttaataataaaattgctacgtagaatttaaatacaatcctcgtagaaacgaatttttattacttggattgaatttggttcacttgccaaatatccatcac 200  Q
    |||||||| |||||||||||||||| ||||||||||||||||| | ||||||||||||||||||  ||||||||||||||| ||||||||||||||||||    
T  36222407 ttaataatgaaattgctacgtagaaattaaatacaatcctcgtggtaacgaatttttattacttcaattgaatttggttcatttgccaaatatccatcac 36222308  T
Q  201 acgaatatattctattgcaatattctctagcttttcacttccattcaaggattgaaccaatccaagagctatccacagacaagtaatttcaacaatagaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222307 acgaatatattctattgcaatattctctagcttttcacttccattcaaggattgaaccaatccaagagctatccacagacaagtaatttcaacaatagaa 36222208  T
Q  301 aatgaataatctttgggatacaaggaaaattaagc 335  Q
    ||||||||||||||||||||||||||||| |||||    
T  36222207 aatgaataatctttgggatacaaggaaaaataagc 36222173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 11279538 - 11279736
Alignment:
Q  1 tcaatcttctaaaaaccaatctttctttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatccttt 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11279538 tcaatcttctaaaaaccaatctttattcgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatccttt 11279637  T
Q  101 ttaataataaaattgctacgtagaatttaaatacaatcctcgtagaaacgaatttttattacttggattgaatttggttcacttgccaaatatccatca 199  Q
    |||||||| ||||||||| |||||| ||||||| | |||| || ||||| |||||||||||||| |||||||||||||||||||||||||||| |||||    
T  11279638 ttaataatgaaattgctaagtagaaattaaatatagtccttgtggaaacaaatttttattacttcgattgaatttggttcacttgccaaatattcatca 11279736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 23759797 - 23759608
Alignment:
Q  10 taaaaaccaatctttctttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatcctttttaataata 109  Q
    |||||||||||  ||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||     
T  23759797 taaaaaccaattctttattgtttttaatcagtttatgttactaaatcaactcaactgcctagggcaccaatataaa-tttatacatcctttttaa-aatg 23759700  T
Q  110 aaattgctacgtagaatttaaatacaatcctcgtagaaacgaa-tttttattacttggattgaatttggttcacttgccaaatatccatcac 200  Q
    || |||||| |||||| ||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||    
T  23759699 aatttgctaagtagaagttaaatacagtcctcgtagaaacgaactttttattacttcgattgaatttggttcacttgccaaatatctatcac 23759608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 33313052 - 33313239
Alignment:
Q  12 aaaaccaatctttctttgtttttaat-cagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatcctttttaataataa 110  Q
    |||||||||| ||  || |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  33313052 aaaaccaatcctttattatttttaattccgtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttacacatcctttttaataatga 33313151  T
Q  111 aattgctacgtagaatttaaatacaatcctcgtagaaacgaatttttattacttggattgaatttggttcacttgccaaatatccatca 199  Q
    |||||||| |||||| || |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||  |||||||| ||||    
T  33313152 aattgctaagtagaagtt-aatacagtcctcgtagaaacgaatttttattacttcgattgaatttgtttcacttctcaaatatctatca 33313239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 46846511 - 46846320
Alignment:
Q  1 tcaatcttctaaaaaccaatctttctttgtttttaa-tcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatcctt 99  Q
    ||||| ||||||||||||||||||  |||||||| | |||||||||  ||  || |||||||||||||||||||||||||||||||||||||||||||||    
T  46846511 tcaattttctaaaaaccaatcttttattgttttttagtcagtttataataagaattcaactcaactgcctagggcaccaatataaattttatacatcctt 46846412  T
Q  100 tttaataataaaattgctacgtagaatttaaatacaatcctcgtagaaacgaatttttattacttggattgaatttggttcacttgccaaat 191  Q
    ||||||||| ||||||||| |||||| ||||||||| ||||||| |||||  ||||||||||||| |||||||| || ||||||||||||||    
T  46846411 tttaataatgaaattgctaagtagaaattaaatacagtcctcgtggaaacatatttttattacttcgattgaatctgattcacttgccaaat 46846320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 294921 - 295106
Alignment:
Q  12 aaaaccaatctttctttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatcctttttaataataaa 111  Q
    |||||||||| || |||| |||||| ||| ||||||||||||| |||||  ||||||| ||||| ||||||||||||  |||||||||||||||||| ||    
T  294921 aaaaccaatccttatttgcttttaaccagcttatgttacaaaa-caact--actgcctcgggcatcaatataaatttattacatcctttttaataatgaa 295017  T
Q  112 attgctacgtagaatttaaatacaatcctcgtagaaacgaa-tttttattacttggattgaatttggttcacttgccaaatatccatca 199  Q
    ||||||| |||||| ||||||||| ||||||| || || || |||||||||||| ||||||||||||||||||||||||||||||||||    
T  295018 attgctaagtagaagttaaatacagtcctcgtggacacaaattttttattacttcgattgaatttggttcacttgccaaatatccatca 295106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 3862094 - 3861907
Alignment:
Q  12 aaaaccaatctttctttgtttttaatcagtttatgttac--aaaatcaactcaactgcctagggcaccaatataaattttatacatcctttttaataata 109  Q
    |||||||||||||  ||||||||||||||||||||||||  |||||||| | |||||||||||||| ||   | ||||| |||||||| ||||||||||     
T  3862094 aaaaccaatcttttattgtttttaatcagtttatgttacaaaaaatcaattgaactgcctagggcatca--ttgaatttaatacatcc-ttttaataatg 3861998  T
Q  110 aaattgctacgtagaatttaaatacaatcctcgtagaaacgaatt-tttattacttggattgaatttggttcacttgccaaatatccatca 199  Q
    ||||||||| |||||| ||||  ||||||||||| || || |||| |||||||||| |||||| | | || ||||||||||||||| ||||    
T  3861997 aaattgctaagtagaagttaataacaatcctcgtggatacaaattatttattacttcgattgactctagtacacttgccaaatatctatca 3861907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 207 - 329
Target Start/End: Complemental strand, 36218310 - 36218188
Alignment:
Q  207 atattctattgcaatattctctagcttttcacttccattcaaggattgaaccaatccaagagctatccacagacaagtaatttcaacaatagaaaatgaa 306  Q
    ||||||| | ||||||| ||||||||||||||||||||| | || |||||| |||||||| | |||||||| |  ||| |||||||| |||  ||| | |    
T  36218310 atattctctggcaatatgctctagcttttcacttccatttatgggttgaactaatccaaggggtatccacaaaatagtcatttcaacgatattaaaggta 36218211  T
Q  307 taatctttgggatacaaggaaaa 329  Q
    || ||||||||||||||||||||    
T  36218210 tagtctttgggatacaaggaaaa 36218188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 199
Target Start/End: Original strand, 6967233 - 6967393
Alignment:
Q  40 gtttatgttacaaaatcaactcaactgcctagggc-accaatataaattttatacatcctttttaataataaaattgctacgtagaatttaaatacaatc 138  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||| ||||  |||||||   |||||| ||||  ||  ||    
T  6967233 gtttatgttacaaaa-caactcaactgcctagggcaatcaatataaa-tttatacatcctttttgataaagaaattgccgagtagaaattaacaacggtc 6967330  T
Q  139 ctcgtagaaacgaa--tttttattacttggattgaatttggttcacttgccaaatatccatca 199  Q
    ||||| || |||||  || ||| ||||| ||| |  |||||| ||||||||||||||| ||||    
T  6967331 ctcgtggatacgaactttattactacttcgatagcttttggtacacttgccaaatatctatca 6967393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 199
Target Start/End: Complemental strand, 17866513 - 17866353
Alignment:
Q  40 gtttatgttacaaaatcaactcaactgcctagggcac-caatataaattttatacatcctttttaataataaaattgctacgtagaatttaaatacaatc 138  Q
    ||||||||||||||| || |||||||||||||||||  |||||||||||| ||||||||||||| ||||  |||||||   |||||| ||||  ||  ||    
T  17866513 gtttatgttacaaaa-cagctcaactgcctagggcaatcaatataaattt-atacatcctttttgataaagaaattgccgagtagaaattaacaacggtc 17866416  T
Q  139 ctcgtagaaacgaa--tttttattacttggattgaatttggttcacttgccaaatatccatca 199  Q
    ||||| || |||||  || ||| ||||| ||| |  |||||| ||||||||||||||| ||||    
T  17866415 ctcgtggatacgaactttattactacttcgatagcttttggtacacttgccaaatatctatca 17866353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 23108045 - 23108106
Alignment:
Q  12 aaaaccaatctttctttgtttttaatcagtttatgttacaaa-atcaactcaactgcctagg 72  Q
    |||||||||||||  |||||||||||  |||||||||||||| ||||||||||||| |||||    
T  23108045 aaaaccaatcttttattgtttttaattcgtttatgttacaaacatcaactcaactgtctagg 23108106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 23313448 - 23313382
Alignment:
Q  12 aaaaccaatctttctttgtttttaatcagtttatgttac-aaaatcaactcaactgcctagggcacc 77  Q
    ||||||| |||||  |||||||||||  ||||||||||| |||||||| |||||| |||||||||||    
T  23313448 aaaaccattcttttattgtttttaattcgtttatgttacaaaaatcaattcaactacctagggcacc 23313382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 24783493 - 24783560
Alignment:
Q  39 agtttatgttacaaaatcaactcaactgcctagggcac-caatataaattttatacatcctttttaataa 107  Q
    |||||||||||||||| |||||||||||||| || ||  |||||||||||| ||||||||||||| ||||    
T  24783493 agtttatgttacaaaa-caactcaactgccttggacaatcaatataaattt-atacatcctttttgataa 24783560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 35957369 - 35957425
Alignment:
Q  215 ttgcaatattctctagcttttcacttccattcaaggattgaaccaatccaagagcta 271  Q
    |||||||| | || ||||||||||||||||| | ||||||||| |||||||| ||||    
T  35957369 ttgcaatactttccagcttttcacttccatttagggattgaactaatccaagggcta 35957425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 33575136 - 33575326
Alignment:
Q  1 tcaatcttctaaaaaccaatctttctttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatccttt 100  Q
    ||||| ||||||||||||||  ||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33575136 tcaattttctaaaaaccaattctttattgtttttaatcagtttatgttactaaatcaactcaactgcctagggcaccaatataaa-tttatacatccttt 33575234  T
Q  101 ttaataataaaattgctacgtagaatttaaatacaatcctcgtagaaacgaa-tttttattacttggattgaatttggttcacttgccaaat 191  Q
    ||||||||||||||||||  ||||| ||||||||| |||||||  ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  33575235 ttaataataaaattgctaaatagaagttaaatacagtcctcgtgaaaacgaattttttattacttcgattgaatttggttcacttgccaaat 33575326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 15532389 - 15532200
Alignment:
Q  10 taaaaaccaatctttctttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatcctttttaataata 109  Q
    |||||||||||  ||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  15532389 taaaaaccaattctttattgtttttaatcagtttatgttactaaatcaactcaactgcctagggcaccaatataaa-tttatacatcctttttaataatg 15532291  T
Q  110 aaattgctacgtagaatttaaatacaatcctcgtagaaacgaa-tttttattacttggattgaatttggttcacttgccaaatatccatca 199  Q
    ||||||||| |||||| ||||||||| ||||||| |||||||| |||||||||||| ||| ||||||||||||| ||||||||||| ||||    
T  15532290 aaattgctaagtagaagttaaatacagtcctcgtggaaacgaattttttattacttcgatcgaatttggttcacatgccaaatatctatca 15532200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 15542571 - 15542387
Alignment:
Q  10 taaaaaccaatctttctttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatcctttttaataata 109  Q
    |||||||||||  ||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  15542571 taaaaaccaattctttattgtttttaatcagtttatgttactaaatcaactcaactgcctagggcaccaatataaa-tttatacatcctttttaataatg 15542473  T
Q  110 aaattgctacgtagaatttaaatacaatcctcgtagaaacgaa-tttttattacttggattgaatttggttcacttgccaaatatc 194  Q
    |||||| || |||||| ||||||||| ||||||| |||||||| |||||||||||| ||| |||||||||||||||||||||||||    
T  15542472 aaattgttaagtagaagttaaatacagtcctcgtggaaacgaattttttattacttcgatcgaatttggttcacttgccaaatatc 15542387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 26711567 - 26711464
Alignment:
Q  96 cctttttaataataaaattgctacgtagaatttaaatacaatcctcgtagaaacgaattttt-attacttggattgaatttggttcacttgccaaatatc 194  Q
    ||||||| ||||| ||||||||| |||||| |||| |||| ||||||| ||||||||||||| |||||||  ||||||||||||||||||||||||||||    
T  26711567 cctttttgataatgaaattgctaagtagaagttaa-tacagtcctcgtggaaacgaattttttattacttcaattgaatttggttcacttgccaaatatc 26711469  T
Q  195 catca 199  Q
     ||||    
T  26711468 tatca 26711464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 26981304 - 26981201
Alignment:
Q  96 cctttttaataataaaattgctacgtagaatttaaatacaatcctcgtagaaacgaattttt-attacttggattgaatttggttcacttgccaaatatc 194  Q
    ||||||| ||||| ||||||||| |||||| |||| |||| ||||||| ||||||||||||| |||||||  ||||||||||||||||||||||||||||    
T  26981304 cctttttgataatgaaattgctaagtagaagttaa-tacagtcctcgtggaaacgaattttttattacttcaattgaatttggttcacttgccaaatatc 26981206  T
Q  195 catca 199  Q
     ||||    
T  26981205 tatca 26981201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 26712501 - 26712439
Alignment:
Q  40 gtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatccttttt 102  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||    
T  26712501 gtttatgttacaaaatcaactcaactgtctagggcactaatataaattttacacatccttttt 26712439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 26982239 - 26982177
Alignment:
Q  40 gtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatccttttt 102  Q
    ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||    
T  26982239 gtttatgttacaaaatcaactcaactgtctagggcactaatataaattttacacatccttttt 26982177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 11989053 - 11988867
Alignment:
Q  12 aaaaccaatctttctttgtttttaatcagtttatgttacaaaa-tcaactcaactgcctagggcaccaatataaattttatacatcctttttaataataa 110  Q
    |||| ||||||||  | |||||||||| ||||||||||||||| ||||||||||||||||||| |||| |  |  |  ||||| ||||| ||| |||| |    
T  11989053 aaaatcaatcttttatcgtttttaatctgtttatgttacaaaaatcaactcaactgcctaggggaccattgaatttaatatacgtccttattactaatga 11988954  T
Q  111 aattgctacg--tagaatttaaatacaatcctcgtagaaacgaatt-tttattacttggattgaatttggttcacttgccaaatatc 194  Q
    |||||||| |  ||||| ||||  ||  | ||||| |||||||||| |||||||||| ||||||||||| |||||||| ||||||||    
T  11988953 aattgctaagtatagaagttaagaacggttctcgtggaaacgaattatttattacttcgattgaatttgattcacttgtcaaatatc 11988867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 199
Target Start/End: Original strand, 22159881 - 22159992
Alignment:
Q  89 tatacatcctttttaataataaaattgctacgtagaatttaaatacaatcctcgtagaaacgaa-tttttattacttggattgaatttggttcacttgcc 187  Q
    |||||||||||||| | ||  ||||||||| |||||| ||||||||| ||||||| ||||| || |||||||||||| ||| ||||||||| |||||| |    
T  22159881 tatacatcctttttgacaaagaaattgctaagtagaagttaaatacagtcctcgtggaaacaaattttttattacttcgatcgaatttggtacacttgtc 22159980  T
Q  188 aaatatccatca 199  Q
    ||||||| ||||    
T  22159981 aaatatctatca 22159992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 7650101 - 7650035
Alignment:
Q  40 gtttatgttacaaaatcaactcaactgcctagggc-accaatataaattttatacatcctttttaataa 107  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||| ||||    
T  7650101 gtttatgttacaaaa-caactcaactgcctagggcaatcaatataaa-tttatacatcctttttgataa 7650035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 116
Target Start/End: Original strand, 34405934 - 34406009
Alignment:
Q  40 gtttatgttacaaaatcaactcaactgcctagggc-accaatataaattttatacatcctttttaataataaaattgc 116  Q
    |||||||||||| || ||||||||||||||||||| | ||||||||| |||||||||||||||| ||||  |||||||    
T  34405934 gtttatgttacacaa-caactcaactgcctagggcaatcaatataaa-tttatacatcctttttgataaagaaattgc 34406009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 191
Target Start/End: Complemental strand, 14616588 - 14616437
Alignment:
Q  40 gtttatgttacaaaatcaactcaactgcctagggcac-caatataaattttatacatcctttttaataataaaattgctacgtagaatttaaatacaatc 138  Q
    ||||||||||||||| |||||||||| ||||||| |  |||||||||||  ||||||||||||| ||||  |||||||   |||||| ||||  ||  ||    
T  14616588 gtttatgttacaaaa-caactcaacttcctagggtaatcaatataaattc-atacatcctttttgataaagaaattgccgagtagaaattaacaacggtc 14616491  T
Q  139 ctcgtagaaacgaattt--ttattacttggattgaatttggttcacttgccaaat 191  Q
    ||||| || ||||||||  ||||||||| ||| |  |||||||||||||||||||    
T  14616490 ctcgtggatacgaatttatttattacttcgatagt-tttggttcacttgccaaat 14616437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 22626484 - 22626311
Alignment:
Q  27 ttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatcctttttaataataaaattgctacgtagaat 126  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||     
T  22626484 ttgtttttaatcagtttatgttactaaatcaactcaactgcctagggcaccaatataaa-tttatacatcctttttaataatgaaattgctaagtagaag 22626386  T
Q  127 ttaaatacaatcctcgtagaaacgaa-tttttattacttggattgaatttggttcacttgccaaatatccatcac 200  Q
    ||||||||| ||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  22626385 ttaaatacagtcctcgtggaaacgaactttttattacttcgatcgaatttggttcacttgccaaatatctatcac 22626311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 11138742 - 11138570
Alignment:
Q  27 ttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatcctttttaataataaaattgctacgtagaat 126  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||     
T  11138742 ttgtttttaatcagtttatgttactaaatcaactcaactgcctagggcaccaatataaa-tttatacatcctttttaataatgaaattgctaagtagaag 11138644  T
Q  127 ttaaatacaatcctcgtagaaacgaa-tttttattacttggattgaatttggttcacttgccaaatatccatca 199  Q
    ||||||||| ||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  11138643 ttaaatacagtcctcgtggaaacgaactttttattacttcgatcgaatttggttcacttgccaaatatctatca 11138570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 40 - 199
Target Start/End: Complemental strand, 39563669 - 39563510
Alignment:
Q  40 gtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatcctttttaataataaaattgctacgtagaatttaaatacaatcc 139  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||| |||||| || |||||| |||    
T  39563669 gtttatgttacaaaatcaactcaactgcctagggcactaatataaattttacacatccttttttataatgaaattgctaagtagaagtt-aatacagtcc 39563571  T
Q  140 tcgtagaaacgaa-tttttattacttggattgaatttggttcacttgccaaatatccatca 199  Q
    |||| |||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||    
T  39563570 tcgtggaaacgaattttttattactttgattgaatttggttcacttgccaaatatctatca 39563510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 160
Target Start/End: Complemental strand, 20536479 - 20536376
Alignment:
Q  55 tcaactcaactgcctagggcaccaatataaattttatacatcctttttaataataaaattgctacgtagaatttaaatacaatcctcgtagaaacgaatt 154  Q
    ||||| |||||||||||||||||  |   |||||  |||||||||||||||||| ||||| ||| |||||| ||||||||| ||||||| || ||||  |    
T  20536479 tcaacccaactgcctagggcacccttg--aatttactacatcctttttaataatgaaatttctaagtagaagttaaatacagtcctcgtggatacgatct 20536382  T
Q  155 tttatt 160  Q
    ||||||    
T  20536381 tttatt 20536376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 9e-61; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 10 - 199
Target Start/End: Original strand, 31528446 - 31528635
Alignment:
Q  10 taaaaaccaatctttctttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatcctttttaataata 109  Q
    |||||||||||  ||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  31528446 taaaaaccaattctttattgtttttaatcagtttatgttactaaatcaactcaactgcctagggcaccaatataaa-tttatacatcctttttaataatg 31528544  T
Q  110 aaattgctacgtagaatttaaatacaatcctcgtagaaacgaa-tttttattacttggattgaatttggttcacttgccaaatatccatca 199  Q
    ||||||||| |||||| ||||||||| ||||||| ||||| || |||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  31528545 aaattgctaagtagaagttaaatacagtcctcgtggaaacaaattttttattacttcgatcgaatttggttcacttgccaaatatctatca 31528635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 13710129 - 13710315
Alignment:
Q  12 aaaaccaatctttctttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatcctttttaataataaa 111  Q
    |||||||||||||  |||||||||||| |||||||||||||  ||||||||||| |||  |||| |||||||||||||||||||||||||||||||| ||    
T  13710129 aaaaccaatcttttattgtttttaatccgtttatgttacaac-tcaactcaacttcctcaggcatcaatataaattttatacatcctttttaataatgaa 13710227  T
Q  112 attgctacgtagaatttaaatacaatcctcgtagaaacgaatttttattacttggattgaatttggttcacttgccaaatatccatca 199  Q
    ||||||| |||||| ||||||||| | |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  13710228 attgctaagtagaagttaaatacagttctcgtaaaaacgaatttttattacttcgattgaatttggttcacttgccaaatatctatca 13710315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 41 - 189
Target Start/End: Original strand, 31626637 - 31626784
Alignment:
Q  41 tttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatcctttttaataataaaattgctacgtagaatttaaatacaatcct 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||| || |||||| ||||    
T  31626637 tttatgttacaaaatcaactcaactgcctagggcaccaatataaattttacacatcctttttaataatgaaattgctaagtagaagtt-aatacagtcct 31626735  T
Q  141 cgtagaaacgaatttttattacttggattgaatttggttcacttgccaa 189  Q
    | | |||||||||||||||||||| ||||||||||||||||||| ||||    
T  31626736 cattgaaacgaatttttattacttcgattgaatttggttcacttaccaa 31626784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 27 - 200
Target Start/End: Original strand, 40018052 - 40018225
Alignment:
Q  27 ttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatcctttttaataataaaattgctacgtagaat 126  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | || |||     
T  40018052 ttgtttttaatccgtttatgttacaaa-tcaactcaactgcctagggcatcaatataaattttatacatcctttttaataaaaaaattgccaagtcgaag 40018150  T
Q  127 ttaaatacaatcctcgtagaaacgaa-tttttattacttggattgaatttggttcacttgccaaatatccatcac 200  Q
    |||||| || |||| ||  |||| || |||||||||||| |||||||||||||||||||||||||||| ||||||    
T  40018151 ttaaatgcactccttgtgaaaacaaattttttattacttcgattgaatttggttcacttgccaaatattcatcac 40018225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 16294945 - 16295044
Alignment:
Q  1 tcaatcttctaaaaaccaatctttctttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatccttt 100  Q
    ||||| |||| ||||| ||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16294945 tcaattttctgaaaactaatctttatttgtttttaatcggtttatgatacaaaatcaactcaactgcctagggcatcaatataaattttatacatccttt 16295044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 13017361 - 13017189
Alignment:
Q  27 ttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatcctttttaataataaaattgctacgtagaat 126  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||     
T  13017361 ttgtttttaatcagtttatgttactaaatcaactcaactgcctagggcaccaatataaa-tttatacatcctttttaataatgaaattgctaagtagaag 13017263  T
Q  127 ttaaatacaatcctcgtagaaacgaa-tttttattacttggattgaatttggttcacttgccaaatatccatca 199  Q
    ||||||| | ||||||| |||||||| |||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  13017262 ttaaatatagtcctcgtggaaacgaactttttattacttcgatcgaatttggttcacttgccaaatatctatca 13017189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 22221771 - 22221959
Alignment:
Q  1 tcaatcttctaaaaaccaatctttctttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatccttt 100  Q
    ||||| ||||||||||||||  ||  ||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||  ||||| |||||||||||    
T  22221771 tcaattttctaaaaaccaattctttattgtttttaattagtttat--tactaaatcaactcaactgcctagggcaccaataataattt-atacatccttt 22221867  T
Q  101 ttaataataaaattgctacgtagaatttaaatacaatcctcgtagaaacgaattt-ttattacttggattgaatttggttcacttgccaaat 191  Q
    |||||||| ||||||||  ||||||  |||||| | ||||||| ||||||||||| ||| ||||| ||| |  |||||| ||||||||||||    
T  22221868 ttaataatgaaattgcttagtagaagctaaatatagtcctcgtggaaacgaatttattactacttcgatagcttttggtacacttgccaaat 22221959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 22247606 - 22247794
Alignment:
Q  1 tcaatcttctaaaaaccaatctttctttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatccttt 100  Q
    ||||| ||||||||||||||  ||  ||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||  ||||| |||||||||||    
T  22247606 tcaattttctaaaaaccaattctttattgtttttaattagtttat--tactaaatcaactcaactgcctagggcaccaataataattt-atacatccttt 22247702  T
Q  101 ttaataataaaattgctacgtagaatttaaatacaatcctcgtagaaacgaattt-ttattacttggattgaatttggttcacttgccaaat 191  Q
    |||||||| ||||||||  ||||||  |||||| | ||||||| ||||||||||| ||| ||||| ||| |  |||||| ||||||||||||    
T  22247703 ttaataatgaaattgcttagtagaagctaaatatagtcctcgtggaaacgaatttattactacttcgatagcttttggtacacttgccaaat 22247794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 30978400 - 30978322
Alignment:
Q  10 taaaaaccaatctttctttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattt 88  Q
    |||||||||||  ||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30978400 taaaaaccaattctttattgtttttaatcagtttatgttactaaatcaactcaactgcctagggcaccaatataaattt 30978322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 199
Target Start/End: Original strand, 14790704 - 14790864
Alignment:
Q  40 gtttatgttacaaaatcaactcaactgcctagggc-accaatataaattttatacatcctttttaataataaaattgctacgtagaatttaaatacaatc 138  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||| ||||  |||||||   |||||| ||||  ||  ||    
T  14790704 gtttatgttacaaaa-caactcaactgcctagggcaatcaatataaa-tttatacatcctttttgataaagaaattgccgagtagaaattaacaacggtc 14790801  T
Q  139 ctcgtagaaacgaa--tttttattacttggattgaatttggttcacttgccaaatatccatca 199  Q
    ||||| || |||||  || ||| ||||| ||| |  |||||| ||||||||||||||| ||||    
T  14790802 ctcgtggatacgaactttattactacttcgatagcttttggtacacttgccaaatatctatca 14790864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 199
Target Start/End: Original strand, 14795732 - 14795892
Alignment:
Q  40 gtttatgttacaaaatcaactcaactgcctagggc-accaatataaattttatacatcctttttaataataaaattgctacgtagaatttaaatacaatc 138  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||| ||||  |||||||   |||||| ||||  ||  ||    
T  14795732 gtttatgttacaaaa-caactcaactgcctagggcaatcaatataaa-tttatacatcctttttgataaagaaattgccgagtagaaattaacaacggtc 14795829  T
Q  139 ctcgtagaaacgaa--tttttattacttggattgaatttggttcacttgccaaatatccatca 199  Q
    |||||||  |||||  || ||| ||||| ||| |  |||||| ||||||||||||||| ||||    
T  14795830 ctcgtaggtacgaactttattactacttcgatagcttttggtacacttgccaaatatctatca 14795892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 15535114 - 15535177
Alignment:
Q  12 aaaaccaatctttctttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggca 75  Q
    |||||||| ||||  ||||||||||||  ||| | |||||||||||||||||||||||||||||    
T  15535114 aaaaccaaacttttattgtttttaatctatttgttttacaaaatcaactcaactgcctagggca 15535177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 16883733 - 16883795
Alignment:
Q  12 aaaaccaatctttctttgtttttaatcagtttatgttac-aaaatcaactcaactgcctaggg 73  Q
    |||||||||||||  |||||||||||  ||||||||||| |||||||| ||||||||||||||    
T  16883733 aaaaccaatcttttattgtttttaattcgtttatgttacaaaaatcaattcaactgcctaggg 16883795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 11184028 - 11183962
Alignment:
Q  7 ttctaaaaaccaatctttctttgtttttaatcagtttatgttacaaaa-tcaactcaactgcctaggg 73  Q
    ||||||||||||| ||||  ||||||||| |  ||||||||||||||| |||||||||||||||||||    
T  11184028 ttctaaaaaccaa-cttttattgtttttattacgtttatgttacaaaaatcaactcaactgcctaggg 11183962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 15540643 - 15540689
Alignment:
Q  27 ttgtttttaatcagtttatgttacaaaatcaactcaactgcctaggg 73  Q
    ||||||||||||  ||||| ||| |||||||||||||||||||||||    
T  15540643 ttgtttttaatccctttattttagaaaatcaactcaactgcctaggg 15540689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 12172045 - 12172218
Alignment:
Q  27 ttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatcctttttaataataaaattgctacgtagaat 126  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||     
T  12172045 ttgtttttaatcagtttatgttactaaatcaactcaactgcctagggcaccaatataaa-tttatacatcctttttaataatgaaattgctaagtagaag 12172143  T
Q  127 ttaaatacaatcctcgtagaaacga--atttttattacttggattgaatttggttcacttgccaaatatccatca 199  Q
    ||||||||| ||||||| |||||||   |||||||||||| ||| ||||||||||||||||||||||||| ||||    
T  12172144 ttaaatacagtcctcgtggaaacgatcttttttattacttcgatcgaatttggttcacttgccaaatatctatca 12172218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 2541956 - 2542128
Alignment:
Q  27 ttgtttttaatcagtttatgttacaa-aatcaactcaactgcctagggcaccaatataaattttatacatcctttttaataataaaattgctacgtagaa 125  Q
    |||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |   ||||| ||||||||||||||||||| ||||||||  ||||||    
T  2541956 ttgtttttaatccgtttatgttacaagaataaactcaactgcctagggcaccattg--aatttaatacatcctttttaataatgaaattgctcagtagaa 2542053  T
Q  126 tttaaatacaatcctcgtagaaacgaatt-tttattacttggattgaatttggttcacttgccaaatatccatca 199  Q
     ||||||||| ||||||| || ||||||| |||||||||| |||||| |||||| ||||||||||||||| ||||    
T  2542054 gttaaatacagtcctcgtggatacgaattatttattacttcgattgactttggtacacttgccaaatatctatca 2542128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 647363 - 647288
Alignment:
Q  40 gtttatgttacaaaatcaactcaactgcctagggcac-caatataaattttatacatcctttttaataataaaattgc 116  Q
    ||||||||||||||| |||||||| |||||||||||  |||||||||||| ||||||||||||| ||||  |||||||    
T  647363 gtttatgttacaaaa-caactcaaatgcctagggcaatcaatataaattt-atacatcctttttgataaagaaattgc 647288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 650635 - 650574
Alignment:
Q  40 gtttatgttacaaaatcaactcaactgcctagggcac-caatataaattttatacatccttttt 102  Q
    ||||||||||||||| |||||||| |||||||||||  |||||||||||| |||||||||||||    
T  650635 gtttatgttacaaaa-caactcaaatgcctagggcaatcaatataaattt-atacatccttttt 650574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 9910 - 10101
Alignment:
Q  1 tcaatcttctaaaaaccaatctttctttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatccttt 100  Q
    ||||| ||||||||||||||  ||  |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  9910 tcaattttctaaaaaccaattatttattgtttttaatcagtttatgttactaaatcaactcaactgcctaggggaccaatataaa-tttatacatccttt 10008  T
Q  101 ttaataataaaattgctacgtagaatttaaatacaatcctcgtagaaacgaat--ttttattacttggattgaatttggttcacttgccaaat 191  Q
    |||||||| ||||||||| |||||| ||||||||| |||  |  |||||||||  ||||||||||| ||| ||||||| ||||||||||||||    
T  10009 ttaataatgaaattgctaagtagaagttaaatacagtccctgaggaaacgaattcttttattacttcgatcgaatttgattcacttgccaaat 10101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 193
Target Start/End: Complemental strand, 12575487 - 12575306
Alignment:
Q  12 aaaaccaatctttctttgtttttaatcagtttatgttacaaaa-tcaactcaactgcctagggcaccaatataaattttatacatcctttttaataataa 110  Q
    |||||||||||||  ||||||||||||| |||||||||||||| |||||||||||||||||||||||| |   ||||| ||||||||||||||||||| |    
T  12575487 aaaaccaatcttttattgtttttaatcaatttatgttacaaaaatcaactcaactgcctagggcaccattg--aatttaatacatcctttttaataatga 12575390  T
Q  111 aattgctacgtagaatttaaatacaatcctcgtagaaacgaatt-tttattacttggattgaatttggttcacttgccaaatat 193  Q
    | ||| |  |||||| ||||  ||| ||||||| || ||||||| |||||||||| ||||||||||||| ||||||||||||||    
T  12575389 acttgttgagtagaagttaacaacagtcctcgtggatacgaattatttattacttcgattgaatttggtacacttgccaaatat 12575306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 41778925 - 41778864
Alignment:
Q  17 caatctttctttgtttttaatcagtttatgttacaaaa-tcaactcaactgcctagggcacc 77  Q
    ||||||||  |||||||||||  ||||||||||||||| |||| ||||||||||||||||||    
T  41778925 caatcttttattgtttttaattcgtttatgttacaaaaatcaattcaactgcctagggcacc 41778864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 14418538 - 14418585
Alignment:
Q  27 ttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggca 75  Q
    |||||||||||  |||||||||| |||| ||||||||||||||||||||    
T  14418538 ttgtttttaatttgtttatgtta-aaaaccaactcaactgcctagggca 14418585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 24381 - 24193
Alignment:
Q  1 tcaatcttctaaaaaccaatctttctttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggcaccaatataaattttatacatccttt 100  Q
    ||||| ||||||||||||||  ||  |||||||||||||||||||  ||| ||||||||||||||||||||||||||||||  ||||| |||||||||||    
T  24381 tcaattttctaaaaaccaattctttattgtttttaatcagtttat--tactaaatcaactcaactgcctagggcaccaataataattt-atacatccttt 24285  T
Q  101 ttaataataaaattgctacgtagaatttaaatacaatcctcgtagaaacgaattt-ttattacttggattgaatttggttcacttgccaaat 191  Q
    |||||||| |||||| |  |||||| ||||||||| ||||||| ||||| ||||| ||| ||||| ||| |  |||||| ||||||||||||    
T  24284 ttaataatgaaattgttgagtagaagttaaatacagtcctcgtggaaacaaatttattactacttcgatagcttttggtacacttgccaaat 24193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 40 - 201
Target Start/End: Original strand, 10765005 - 10765167
Alignment:
Q  40 gtttatgttacaaaatcaactcaactgcctagggc-accaatataaattttatacatcctttttaataataaaattgctacgtagaatttaaatacaatc 138  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||| ||||  |||||||   |||||| ||||  ||  ||    
T  10765005 gtttatgttacaaaa-caactcaactgcctagggcaatcaatataaa-tttatacatcctttttgataaagaaattgccgagtagaaattaacaacggtc 10765102  T
Q  139 ctcgtagaaacgaa--tttttattacttggattgaatttggttcacttgccaaatatccatcaca 201  Q
    ||||| || |||||  || ||| ||||| ||| |  |||||| ||||||||||||||| ||||||    
T  10765103 ctcgtggatacgaactttattactacttcgatagcttttggtacacttgccaaatatctatcaca 10765167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 199
Target Start/End: Original strand, 13493348 - 13493508
Alignment:
Q  40 gtttatgttacaaaatcaactcaactgcctagggc-accaatataaattttatacatcctttttaataataaaattgctacgtagaatttaaatacaatc 138  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||| ||||  |||||||   |||||| ||||  ||  ||    
T  13493348 gtttatgttacaaaa-caactcaactgcctagggcaatcaatataaa-tttatacatcctttttgataaagaaattgccgagtagaaattaacaacggtc 13493445  T
Q  139 ctcgtagaaacgaa--tttttattacttggattgaatttggttcacttgccaaatatccatca 199  Q
    ||||| || |||||  || ||| ||||| ||| |  |||||| ||||||||||||||| ||||    
T  13493446 ctcgtggatacgaactttattactacttcgatagcttttggtacacttgccaaatatctatca 13493508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 34066402 - 34066468
Alignment:
Q  12 aaaaccaatctttctttgtttttaatcagtttatgttac-aaaatcaactcaactgcctagggcacc 77  Q
    |||||||||||||  |||||||||||  ||||||||||| |||||||| ||||||||||||||||||    
T  34066402 aaaaccaatcttttattgtttttaattcgtttatgttacaaaaatcaattcaactgcctagggcacc 34066468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 194
Target Start/End: Original strand, 1936701 - 1936869
Alignment:
Q  29 gtttttaat-cagtttatgttacaa-aatcaactcaactgcctagggca-ccaatataaattttatacatcctttttaataataaaattgctacgtagaa 125  Q
    ||||||||| ||||||||| ||||| |||||||||||||||||||| || || || | ||||| ||||||| || ||| |||| ||||||| | ||||||    
T  1936701 gtttttaattcagtttatgatacaacaatcaactcaactgcctaggtcaacccat-tgaatttaatacatcgttattactaatgaaattgccaagtagaa 1936799  T
Q  126 tttaaatacaatcctcgtagaaacgaattttt-attacttggattgaatttggttcacttgccaaatatc 194  Q
     ||||  |   || | || |||| ||||| || ||||||| |||||||||||||||||||||||||||||    
T  1936800 gttaacaatggtcattgtggaaatgaattattcattacttcgattgaatttggttcacttgccaaatatc 1936869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 8435289 - 8435358
Alignment:
Q  7 ttctaaaaaccaatctttctttgtttttaatcagtttatgttacaaaa-tcaactcaactgcctagggcac 76  Q
    ||||||||||||| ||||  ||||||||| |  ||||||||||||||| ||||||||||||||||||||||    
T  8435289 ttctaaaaaccaa-cttttattgtttttattatgtttatgttacaaaaatcaactcaactgcctagggcac 8435358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 191
Target Start/End: Original strand, 13496073 - 13496224
Alignment:
Q  40 gtttatgttacaaaatcaactcaactgcctagggcac-caatataaattttatacatcctttttaataataaaattgctacgtagaatttaaatacaatc 138  Q
    ||||||||||||||| ||| ||||||||||||| ||  |||||||||||| ||||||||||||| ||||  |||||||   |||||| ||||  ||  ||    
T  13496073 gtttatgttacaaaa-caattcaactgcctaggacaatcaatataaattt-atacatcctttttgataaagaaattgccgagtagaaattaacaacggtc 13496170  T
Q  139 ctcgtagaaacgaatt--tttattacttggattgaatttggttcacttgccaaat 191  Q
    ||||| || |||||||  |||||||||| ||| |  ||||||||||||| |||||    
T  13496171 ctcgtggatacgaatttatttattacttcgatag-ttttggttcacttgtcaaat 13496224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 78
Target Start/End: Complemental strand, 16190365 - 16190299
Alignment:
Q  12 aaaaccaatctttctttgtttttaatcagtttatgttacaaa-atcaactcaactgcctagggcacca 78  Q
    ||||||||||||| || |||||||||  |||||||||||||| |||||||||| | ||||||||||||    
T  16190365 aaaaccaatctttatt-gtttttaattcgtttatgttacaaacatcaactcaatttcctagggcacca 16190299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 18125078 - 18125145
Alignment:
Q  204 aatatattctattgcaatattctctagcttttcacttccattcaaggattgaaccaatccaagagcta 271  Q
    |||||||||| ||||||||| |||||| ||||||||||| |||  || |||||| |||||||| ||||    
T  18125078 aatatattctcttgcaatatcctctagtttttcacttccgttccggggttgaactaatccaagggcta 18125145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 23990322 - 23990262
Alignment:
Q  12 aaaaccaatctttctttgtttttaatcagtttatgttac-aaaatcaactcaactgcctag 71  Q
    |||||| ||||||  |||||||||||| || |||||||| ||||| |||||||||||||||    
T  23990322 aaaacctatcttttattgtttttaatccgtatatgttacaaaaattaactcaactgcctag 23990262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 180 - 133
Alignment:
Q  27 ttgtttttaatcagtttatgttacaaaatcaactcaactgcctagggca 75  Q
    |||||||||||  |||||||||| |||| ||||||||||||||||||||    
T  180 ttgtttttaatttgtttatgtta-aaaaccaactcaactgcctagggca 133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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