View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16521_high_48 (Length: 345)
Name: NF16521_high_48
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_high_48 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 136; Significance: 7e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 837404 - 837670
Alignment:
| Q |
1 |
agtacaatttctctaggagataacatcattgttatgtacctcatgaatcatgatcttggacttcaacttgaacttgaaagaaatcacnnnnnnnnnnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
837404 |
agtacaatttctctaggagataacatcattgttat-------------catgatcttggacttcaacttgaacttgaaagaaatcacttttgattttttg |
837490 |
T |
|
| Q |
101 |
nnnnnnctttgactcatgtttcggttttatgtacttcaaattgtatgcaaccaagaaagagatatacaacttgacctcaacttgaa----------acta |
190 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
837491 |
ttttttctttgactcatgttttggttttatgtacttcaaattgtatgcaaccaagaaagagatatacaacttgacctcaacttgaattgataggaaacta |
837590 |
T |
|
| Q |
191 |
aaatgcatacatttaggctagttttggggactagatccaaagtacacttagtcaatagtcaatatctgagtcaactagct |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
837591 |
aaatgcatacatttaggctagttttggggactagatccaaagtacacttagtcaatagtcaacatctgagtcaactagct |
837670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 254
Target Start/End: Original strand, 819357 - 819512
Alignment:
| Q |
107 |
ctttgactcatgtttcggttttatgtacttcaaattgtatgcaaccaagaaagagatatacaacttgacctcaacttgaa----------actaaaatgc |
196 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||| | |||||||| ||| ||||||||| ||||||||||||||||||||| | | ||||| |
|
|
| T |
819357 |
ctttgactcatattttggttttatgtatttcaact-gtatgcaatcaacaaagagataaacaacttgacctcaacttgaattgataggaaattgaaatgt |
819455 |
T |
|
| Q |
197 |
atacatttaggctagttttggggactagatccaaagtacacttagtcaatagtcaata |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
819456 |
atacatttaggctagttttggggactagatccatagtacacttagtc-atagtcaata |
819512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 819271 - 819305
Alignment:
| Q |
1 |
agtacaatttctctaggagataacatcattgttat |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
819271 |
agtacaatttctctaggagataacatcattgttat |
819305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University