View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16521_high_75 (Length: 239)
Name: NF16521_high_75
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_high_75 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 37865047 - 37864836
Alignment:
| Q |
19 |
agtcgctcactcaaggtcacagaaagtgaatacagaagccaccgtcctccaccgtcctccaccgtagaaatcaccgcgaagtaaaacctgatacgacatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37865047 |
agtcgctcactcaaggtcacagaaagtgaatacagaagccaccgtcctccaccgt----------agaaatcaccgtgaagtaaaacctgatacgacatg |
37864958 |
T |
|
| Q |
119 |
tcttctctgagaaacgccgttcccagacctgctcacaaagagcgtcctcaaccgtaactctctttcctttcctcttcacataaaccatcactgta-tttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| |
|
|
| T |
37864957 |
tcttctctgagaaacgccgttcccagacctgctcacaaagagcgtcctcaaccgtaactctctttcctttcctcttcacaaaaaccatcactatattttt |
37864858 |
T |
|
| Q |
218 |
cttcaattttatttgatttttt |
239 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
37864857 |
cttcaattttattcgatttttt |
37864836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University