View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16521_high_77 (Length: 236)

Name: NF16521_high_77
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16521_high_77
NF16521_high_77
[»] chr7 (37 HSPs)
chr7 (23-236)||(32060622-32060835)
chr7 (69-236)||(18392560-18392727)
chr7 (24-236)||(20343553-20343764)
chr7 (69-236)||(6592701-6592868)
chr7 (69-236)||(6594917-6595084)
chr7 (69-190)||(18389124-18389245)
chr7 (69-181)||(1562367-1562479)
chr7 (72-236)||(2058388-2058551)
chr7 (71-233)||(24789483-24789645)
chr7 (70-236)||(21640204-21640370)
chr7 (24-233)||(43504453-43504664)
chr7 (72-233)||(1532960-1533121)
chr7 (51-236)||(20357081-20357266)
chr7 (105-236)||(21811792-21811923)
chr7 (15-86)||(6592628-6592698)
chr7 (72-233)||(21646423-21646586)
chr7 (28-233)||(48408455-48408662)
chr7 (24-86)||(6594852-6594914)
chr7 (17-86)||(1562295-1562364)
chr7 (27-86)||(18389062-18389121)
chr7 (27-86)||(18392498-18392557)
chr7 (72-233)||(39730990-39731153)
chr7 (71-181)||(12406640-12406749)
chr7 (73-233)||(18409180-18409342)
chr7 (73-233)||(25767327-25767489)
chr7 (72-181)||(4873505-4873613)
chr7 (105-181)||(24023927-24024003)
chr7 (105-184)||(24265782-24265861)
chr7 (73-210)||(18414056-18414194)
chr7 (105-184)||(24260926-24261005)
chr7 (71-164)||(12397288-12397380)
chr7 (72-236)||(31109123-31109287)
chr7 (105-184)||(16880476-16880555)
chr7 (105-184)||(16885331-16885410)
chr7 (125-181)||(47264102-47264158)
chr7 (187-228)||(18390479-18390520)
chr7 (19-62)||(25767253-25767297)
[»] chr5 (51 HSPs)
chr5 (69-236)||(16546269-16546436)
chr5 (69-236)||(40379731-40379898)
chr5 (69-236)||(40381942-40382109)
chr5 (69-236)||(16544047-16544214)
chr5 (24-236)||(22536588-22536799)
chr5 (69-236)||(25077759-25077926)
chr5 (69-236)||(25135728-25135895)
chr5 (71-236)||(10592897-10593061)
chr5 (19-233)||(29720022-29720239)
chr5 (72-208)||(24136266-24136401)
chr5 (105-236)||(28807129-28807260)
chr5 (73-233)||(18442014-18442176)
chr5 (71-236)||(27445349-27445513)
chr5 (71-236)||(27450192-27450356)
chr5 (73-233)||(26177523-26177685)
chr5 (71-181)||(43592655-43592764)
chr5 (71-181)||(43599100-43599209)
chr5 (71-181)||(43604592-43604701)
chr5 (71-181)||(43610084-43610193)
chr5 (71-160)||(29751526-29751615)
chr5 (86-233)||(9789605-9789752)
chr5 (73-233)||(26170414-26170576)
chr5 (105-228)||(2785778-2785901)
chr5 (105-236)||(15045096-15045226)
chr5 (23-86)||(16544217-16544280)
chr5 (23-86)||(16546439-16546502)
chr5 (23-86)||(25077929-25077992)
chr5 (23-86)||(25135898-25135961)
chr5 (105-228)||(33768587-33768710)
chr5 (105-228)||(33791719-33791842)
chr5 (15-86)||(40379901-40379971)
chr5 (15-86)||(40382112-40382182)
chr5 (105-236)||(30631764-30631895)
chr5 (74-236)||(1456691-1456852)
chr5 (106-228)||(37561008-37561130)
chr5 (28-190)||(16407741-16407905)
chr5 (72-160)||(35388079-35388169)
chr5 (106-228)||(37556186-37556308)
chr5 (111-187)||(29722255-29722332)
chr5 (71-189)||(38219809-38219929)
chr5 (76-181)||(31180637-31180741)
chr5 (28-159)||(16409208-16409341)
chr5 (111-181)||(29402658-29402728)
chr5 (105-228)||(31396551-31396674)
chr5 (105-228)||(31401408-31401531)
chr5 (19-86)||(9789517-9789584)
chr5 (19-86)||(18441941-18442008)
chr5 (125-190)||(9352907-9352972)
chr5 (24-68)||(10593084-10593128)
chr5 (19-86)||(29722332-29722399)
chr5 (165-233)||(29752265-29752333)
[»] scaffold0137 (2 HSPs)
scaffold0137 (69-236)||(5912-6080)
scaffold0137 (24-86)||(6083-6145)
[»] chr3 (61 HSPs)
chr3 (24-236)||(10208831-10209044)
chr3 (69-236)||(25637066-25637233)
chr3 (69-236)||(54634763-54634930)
chr3 (71-236)||(6716138-6716303)
chr3 (71-228)||(6718330-6718487)
chr3 (69-236)||(4598886-4599054)
chr3 (69-236)||(4601107-4601275)
chr3 (69-236)||(3617087-3617254)
chr3 (69-236)||(10055858-10056026)
chr3 (69-236)||(10066968-10067136)
chr3 (69-236)||(10211031-10211199)
chr3 (69-228)||(45282627-45282786)
chr3 (69-236)||(10058080-10058248)
chr3 (69-236)||(10060302-10060470)
chr3 (69-236)||(10062524-10062692)
chr3 (69-236)||(10064746-10064914)
chr3 (72-236)||(8477785-8477949)
chr3 (27-236)||(2671118-2671328)
chr3 (72-236)||(40372309-40372473)
chr3 (76-211)||(8738602-8738736)
chr3 (76-211)||(9090840-9090974)
chr3 (71-236)||(7167664-7167829)
chr3 (71-181)||(27352189-27352299)
chr3 (74-188)||(800787-800903)
chr3 (24-88)||(10056027-10056091)
chr3 (24-88)||(10058249-10058313)
chr3 (24-88)||(10060471-10060535)
chr3 (24-88)||(10062693-10062757)
chr3 (24-88)||(10064915-10064979)
chr3 (24-88)||(10067137-10067201)
chr3 (24-86)||(3617257-3617319)
chr3 (24-86)||(10211202-10211264)
chr3 (24-86)||(25637236-25637298)
chr3 (25-86)||(4601043-4601104)
chr3 (105-236)||(2672472-2672603)
chr3 (72-181)||(28503427-28503535)
chr3 (105-236)||(22172715-22172846)
chr3 (73-233)||(1306385-1306547)
chr3 (72-181)||(28501260-28501368)
chr3 (105-236)||(2676628-2676759)
chr3 (105-184)||(8512643-8512722)
chr3 (105-184)||(8517523-8517602)
chr3 (105-236)||(18656844-18656976)
chr3 (72-160)||(7782513-7782603)
chr3 (105-184)||(24968520-24968599)
chr3 (105-184)||(32475887-32475966)
chr3 (105-184)||(32480745-32480824)
chr3 (71-190)||(23198309-23198430)
chr3 (28-190)||(26928180-26928344)
chr3 (71-228)||(32143726-32143885)
chr3 (17-68)||(4598813-4598865)
chr3 (71-190)||(23200508-23200629)
chr3 (28-86)||(23198247-23198305)
chr3 (125-228)||(27986000-27986103)
chr3 (22-86)||(7782444-7782508)
chr3 (125-233)||(33386194-33386302)
chr3 (32-86)||(1306306-1306360)
chr3 (28-86)||(23200446-23200504)
chr3 (71-189)||(27453361-27453480)
chr3 (24-68)||(6716326-6716369)
chr3 (24-68)||(6718510-6718553)
[»] chr8 (32 HSPs)
chr8 (24-181)||(15290251-15290409)
chr8 (24-181)||(15470620-15470778)
chr8 (70-228)||(25689603-25689760)
chr8 (69-236)||(3439141-3439307)
chr8 (69-236)||(42575688-42575856)
chr8 (72-236)||(4759587-4759751)
chr8 (72-236)||(30656065-30656229)
chr8 (70-236)||(33037340-33037506)
chr8 (105-236)||(39784378-39784509)
chr8 (71-236)||(18852680-18852845)
chr8 (72-233)||(1261471-1261634)
chr8 (72-236)||(36979797-36979961)
chr8 (24-88)||(42575623-42575687)
chr8 (71-181)||(18870129-18870239)
chr8 (105-236)||(10683792-10683923)
chr8 (70-236)||(6311717-6311882)
chr8 (105-228)||(35745794-35745917)
chr8 (70-228)||(10688660-10688817)
chr8 (86-187)||(2627421-2627522)
chr8 (92-190)||(26288319-26288417)
chr8 (92-190)||(26301576-26301674)
chr8 (92-190)||(26313570-26313668)
chr8 (72-181)||(7289536-7289644)
chr8 (109-181)||(25327772-25327844)
chr8 (19-86)||(25689764-25689831)
chr8 (73-160)||(31043017-31043106)
chr8 (28-86)||(31043131-31043189)
chr8 (28-86)||(26288234-26288292)
chr8 (28-86)||(26301491-26301549)
chr8 (28-86)||(26313485-26313543)
chr8 (19-56)||(2627573-2627610)
chr8 (24-68)||(3439328-3439371)
[»] scaffold0674 (2 HSPs)
scaffold0674 (69-236)||(4090-4257)
scaffold0674 (24-86)||(4025-4087)
[»] chr1 (25 HSPs)
chr1 (69-236)||(44203271-44203438)
chr1 (69-236)||(9036056-9036223)
chr1 (79-233)||(20622610-20622764)
chr1 (105-236)||(44023430-44023561)
chr1 (72-233)||(40282015-40282179)
chr1 (72-228)||(24793708-24793864)
chr1 (105-236)||(1054567-1054698)
chr1 (28-233)||(19360969-19361176)
chr1 (72-211)||(24786904-24787042)
chr1 (105-228)||(25439460-25439583)
chr1 (105-236)||(39445898-39446029)
chr1 (72-187)||(21053642-21053760)
chr1 (105-228)||(25444653-25444776)
chr1 (23-86)||(44203441-44203504)
chr1 (28-190)||(51765090-51765254)
chr1 (105-236)||(41391002-41391132)
chr1 (105-228)||(41398657-41398779)
chr1 (72-186)||(9986889-9987005)
chr1 (72-160)||(24202360-24202450)
chr1 (73-233)||(19365825-19365987)
chr1 (105-184)||(43988054-43988133)
chr1 (24-86)||(9036226-9036287)
chr1 (28-86)||(19365993-19366051)
chr1 (28-86)||(24202455-24202513)
chr1 (28-85)||(19358530-19358587)
[»] chr6 (41 HSPs)
chr6 (24-236)||(27647521-27647732)
chr6 (69-236)||(6136327-6136494)
chr6 (69-235)||(25420851-25421017)
chr6 (71-236)||(16578883-16579048)
chr6 (71-236)||(16616332-16616497)
chr6 (71-236)||(16554507-16554672)
chr6 (71-236)||(16631063-16631228)
chr6 (69-208)||(33342467-33342607)
chr6 (69-236)||(13150902-13151070)
chr6 (68-181)||(34164552-34164666)
chr6 (69-236)||(34166719-34166887)
chr6 (69-181)||(6026942-6027054)
chr6 (24-181)||(25421000-25421176)
chr6 (51-228)||(5266434-5266611)
chr6 (71-228)||(16652758-16652915)
chr6 (23-233)||(2171835-2172047)
chr6 (105-236)||(6438899-6439030)
chr6 (72-190)||(5674329-5674447)
chr6 (105-228)||(28155132-28155255)
chr6 (17-160)||(6097732-6097877)
chr6 (75-190)||(411785-411903)
chr6 (72-228)||(16839114-16839269)
chr6 (24-88)||(33342402-33342466)
chr6 (24-88)||(34166888-34166952)
chr6 (15-86)||(6027057-6027127)
chr6 (105-228)||(33329994-33330117)
chr6 (105-228)||(33335491-33335614)
chr6 (24-87)||(34164667-34164730)
chr6 (73-190)||(22709426-22709545)
chr6 (105-228)||(6005822-6005945)
chr6 (122-236)||(30125071-30125185)
chr6 (72-190)||(3073123-3073243)
chr6 (72-181)||(22010297-22010405)
chr6 (24-86)||(6136263-6136324)
chr6 (71-236)||(11857350-11857514)
chr6 (105-184)||(5343880-5343959)
chr6 (109-181)||(14737174-14737246)
chr6 (109-181)||(14742034-14742106)
chr6 (125-190)||(5757051-5757116)
chr6 (125-190)||(23896792-23896857)
chr6 (71-160)||(26253698-26253789)
[»] chr4 (27 HSPs)
chr4 (69-236)||(7122320-7122487)
chr4 (68-236)||(5135702-5135871)
chr4 (68-236)||(5137928-5138097)
chr4 (97-236)||(7124542-7124681)
chr4 (27-228)||(29760995-29761197)
chr4 (72-236)||(24742360-24742524)
chr4 (105-236)||(18856125-18856256)
chr4 (71-236)||(8393035-8393200)
chr4 (105-236)||(45347370-45347501)
chr4 (71-236)||(8395244-8395409)
chr4 (75-233)||(31495685-31495845)
chr4 (72-236)||(56141564-56141728)
chr4 (71-236)||(51520833-51520997)
chr4 (105-226)||(45356861-45356982)
chr4 (15-87)||(5135872-5135943)
chr4 (15-87)||(5138098-5138169)
chr4 (24-86)||(7122490-7122552)
chr4 (72-190)||(13992659-13992779)
chr4 (73-190)||(28468077-28468196)
chr4 (72-236)||(9223952-9224115)
chr4 (109-236)||(18712308-18712435)
chr4 (72-181)||(9228794-9228902)
chr4 (171-236)||(18860403-18860468)
chr4 (105-236)||(5733062-5733194)
chr4 (105-181)||(3814422-3814497)
chr4 (71-160)||(31985236-31985327)
chr4 (19-86)||(31495610-31495677)
[»] scaffold0565 (1 HSPs)
scaffold0565 (17-236)||(2893-3132)
[»] chr2 (19 HSPs)
chr2 (17-236)||(12647675-12647914)
chr2 (72-236)||(9295915-9296079)
chr2 (72-236)||(14291908-14292072)
chr2 (72-236)||(11098440-11098604)
chr2 (73-190)||(6266374-6266493)
chr2 (73-190)||(25410047-25410166)
chr2 (105-228)||(19349683-19349806)
chr2 (73-233)||(3492158-3492320)
chr2 (105-228)||(19344825-19344948)
chr2 (73-190)||(30833021-30833140)
chr2 (73-233)||(32289205-32289367)
chr2 (72-233)||(4484703-4484866)
chr2 (166-236)||(32247229-32247299)
chr2 (72-181)||(39811585-39811693)
chr2 (23-86)||(30833146-30833209)
chr2 (19-86)||(4484631-4484698)
chr2 (71-190)||(28258750-28258870)
chr2 (71-190)||(40739236-40739357)
chr2 (19-56)||(6266529-6266566)
[»] scaffold0286 (1 HSPs)
scaffold0286 (23-233)||(21996-22208)
[»] scaffold0464 (1 HSPs)
scaffold0464 (105-236)||(761-892)
[»] scaffold0188 (1 HSPs)
scaffold0188 (19-233)||(17488-17705)
[»] scaffold0491 (2 HSPs)
scaffold0491 (28-233)||(9045-9251)
scaffold0491 (72-233)||(11534-11696)
[»] scaffold0197 (2 HSPs)
scaffold0197 (72-228)||(18725-18880)
scaffold0197 (105-184)||(13889-13968)
[»] scaffold0009 (1 HSPs)
scaffold0009 (105-184)||(176555-176634)
[»] scaffold0135 (1 HSPs)
scaffold0135 (72-181)||(34662-34770)
[»] scaffold0355 (1 HSPs)
scaffold0355 (109-181)||(3445-3517)
[»] scaffold0259 (1 HSPs)
scaffold0259 (72-184)||(1844-1955)
[»] scaffold0028 (1 HSPs)
scaffold0028 (72-184)||(148549-148660)
[»] scaffold0665 (1 HSPs)
scaffold0665 (109-181)||(8112-8184)
[»] scaffold1519 (2 HSPs)
scaffold1519 (92-233)||(539-680)
scaffold1519 (28-86)||(707-765)
[»] scaffold0510 (1 HSPs)
scaffold0510 (125-190)||(1183-1248)
[»] scaffold0098 (1 HSPs)
scaffold0098 (133-190)||(45666-45723)


Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 23 - 236
Target Start/End: Original strand, 32060622 - 32060835
Alignment:
Q  23 ccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaagg 122  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32060622 ccttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaagg 32060721  T
Q  123 atacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgt 221  Q
    ||||||||||||||||||||  |||||||||||||||| ||  ||||||||||||| |||||| ||||| |||| |||||||||||| |   ||||||||    
T  32060722 atacttaacgagcaagtttcttgatcgtgtcacgattttcccaaatcgtgccacga-tttgcacccctgcaaccctagctcacggcatccgaaatcgtgt 32060820  T
Q  222 cacgattccaaaatc 236  Q
    |||||| ||||||||    
T  32060821 cacgataccaaaatc 32060835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 18392560 - 18392727
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||    
T  18392560 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattttcccaaat 18392659  T
Q  169 cgtgccacgattttgcaccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||| ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  18392660 cgtgtcacgaatttgcaccctgcaaccctagctcacggcacctccaatcgtgtcacgattccaaaatc 18392727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 20343764 - 20343553
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaagga 123  Q
    |||||||||||||||| ||||||| | ||||||||||||||||||  |||||||||||||| ||||| |  |||||| ||||||||||||||||||||||    
T  20343764 cttcaaatctgcacaagaacacttta-tactagtcttcctctgttgaaatcgtgtcacgatctgcgtaccacccaagaaacgaccagtccttatcaagga 20343666  T
Q  124 tacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || | |||| |||||||||||||| |  |||||||||    
T  20343665 tacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgacacgattttgcatccggcaacc-tagctcacggcaccccgaaatcgtgtc 20343567  T
Q  223 acgattccaaaatc 236  Q
    ||||| ||| ||||    
T  20343566 acgatgccacaatc 20343553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 6592701 - 6592868
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||  |||    
T  6592701 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgattttcccaaat 6592800  T
Q  169 cgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||||||||| |||||| ||||| |||| |||||||||||| |   |||||||||||||| ||||||||    
T  6592801 cgtgccacga-tttgcacccctgcaaccctagctcacggcatccgaaatcgtgtcacgatcccaaaatc 6592868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 6594917 - 6595084
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||  |||    
T  6594917 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgattttcccaaat 6595016  T
Q  169 cgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||||||||| |||||| ||||| |||| |||||||||||| |   |||||||||||||| ||||||||    
T  6595017 cgtgccacga-tttgcacccctgcaaccctagctcacggcatccgaaatcgtgtcacgatcccaaaatc 6595084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 18389124 - 18389245
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||    
T  18389124 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattttcccaaat 18389223  T
Q  169 cgtgccacgattttgcaccctg 190  Q
    |||| ||||| |||||||||||    
T  18389224 cgtgtcacgaatttgcaccctg 18389245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 69 - 181
Target Start/End: Original strand, 1562367 - 1562479
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  1562367 ccaatcgtgtcacgatttgcgtccgtcacaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttaccaaaat 1562466  T
Q  169 cgtgccacgattt 181  Q
    |||| ||||||||    
T  1562467 cgtgacacgattt 1562479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 72 - 236
Target Start/End: Original strand, 2058388 - 2058551
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||||||||| |  ||||||| | ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||  |||||    
T  2058388 atcgtgtcacgatttgcgtacaacccaaggtatgaccagtccttatcaaggatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgt 2058487  T
Q  172 gccacgattttgcaccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||||||||| ||  |||| || | |||||||||||||||| |||||||||||||| ||||||||    
T  2058488 gccacgatttggcgtcctgcaaac-tagctcacggcacctcaaatcgtgtcacgatgccaaaatc 2058551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 71 - 233
Target Start/End: Complemental strand, 24789645 - 24789483
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    |||||||||| ||||||||| |  ||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||    
T  24789645 aatcgtgtcaagatttgcgtacaacccaaggtatgaccagtccttatcaaggatacttaacgagcaagtttcacaatcgtgtcacgatttcccaagatcg 24789546  T
Q  171 tgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
    ||||||||||| |||||||| || | |||||||||||||| |  |||||||||||||| |||||    
T  24789545 tgccacgatttggcaccctgcaaac-tagctcacggcaccacgaaatcgtgtcacgatgccaaa 24789483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 70 - 236
Target Start/End: Original strand, 21640204 - 21640370
Alignment:
Q  70 caatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatc 169  Q
    ||||||||||||||||||||||||| |||||| | |||||||||||||||  ||||||||| |||||||||||   |||||||||||||||||||  |||    
T  21640204 caatcgtgtcacgatttgcgtccgttccaaggcatgaccagtccttatcagtgatacttaatgagcaagtttctgaatcgtgtcacgatttcccaagatc 21640303  T
Q  170 gtgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    ||| |||||||| ||  |||| || | ||||||||||||||||  |||||||||||||| ||||||||    
T  21640304 gtgtcacgatttggcgtcctgcaaac-tagctcacggcacctcgaaatcgtgtcacgatgccaaaatc 21640370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 233
Target Start/End: Original strand, 43504453 - 43504664
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaag 121  Q
    |||||||||||||||  ||||||||| |||||| | ||| ||| |  |||||||||||||||  ||| || ||||||||| ||||||||||||||||| |    
T  43504453 cttcaaatctgcacaggaacacttaaatactagccctccactgataaaatcgtgtcacgattggtgcatctgtcccaaggtacgaccagtccttatcatg 43504552  T
Q  122 gatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg-aaaccttagctcacggcacctc-caatcgt 219  Q
    || |||||||||||||||||    |||||||||||||||||||| |||||| |||||||| |||||||| |||||  ||||||||||| | |  ||||||    
T  43504553 gaaacttaacgagcaagtttgcaaatcgtgtcacgatttcccacgatcgtgtcacgatttggcaccctgcaaacc--agctcacggcatcacgaaatcgt 43504650  T
Q  220 gtcacgattccaaa 233  Q
    |||||||| |||||    
T  43504651 gtcacgatgccaaa 43504664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 233
Target Start/End: Complemental strand, 1533121 - 1532960
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    |||||||||||||||| ||  ||||||||| |  ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||  |||||    
T  1533121 atcgtgtcacgatttgtgtatgtcccaaggtataaccagtccttatcaaggatacttaacgagtaagtttcacaatcgtgtcacgatttcccaagatcgt 1533022  T
Q  172 gccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
    | |||||||| |||||||| || | ||||||| ||||||||  |||| ||||||||| |||||    
T  1533021 gtcacgatttggcaccctgcaaac-tagctcatggcacctcaaaatcatgtcacgatgccaaa 1532960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 20357266 - 20357081
Alignment:
Q  51 tactagtcttcctctgttccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgt 150  Q
    ||||||||||||||||   |||||||| ||||||||||||| | |||||||   |||| |||||||||||||||||||||||||||||||||   ||| |    
T  20357266 tactagtcttcctctgaagcaatcgtgccacgatttgcgtctgacccaaggtttgaccggtccttatcaaggatacttaacgagcaagtttctgaatcat 20357167  T
Q  151 gtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcacggcacc-tccaatcgtgtcacgattccaaaatc 236  Q
    ||||||||||||||  ||||||||||||||| ||  |||| || | |||||||||||||| |  |||||||||||||| ||||||||    
T  20357166 gtcacgatttcccaagatcgtgccacgatttggcgtcctgcaaac-tagctcacggcaccttgaaatcgtgtcacgatgccaaaatc 20357081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 21811923 - 21811792
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||  ||||||||||||||||||||  |||||||||||||||||||||||| || | | ||||||    
T  21811923 gaccagtccttatcagagatacttaactagcaagtttctggatcgtgtcacgatttcccaagatcgtgccacgattttgcaccctgcaaacattgctcac 21811824  T
Q  205 ggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||| |||  |||||||||||||  |||||||    
T  21811823 ggcatctcagatcgtgtcacgatggcaaaatc 21811792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 6592628 - 6592698
Alignment:
Q  15 acctctctccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6592628 acctctctc-ttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 6592698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 72 - 233
Target Start/End: Original strand, 21646423 - 21646586
Alignment:
Q  72 atcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatc 169  Q
    |||||| |||||||||  ||| |||||||||| | ||||||| ||||||||||||||||||||||||||||| |  ||||||||||||||| |||  |||    
T  21646423 atcgtggcacgatttgaacgtacgtcccaaggtatgaccagttcttatcaaggatacttaacgagcaagtttgaaaatcgtgtcacgattttccaagatc 21646522  T
Q  170 gtgccacgattttgcaccctg-aaaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
    ||| |||||||| |||||||| |||||  ||||||||||| | |  |||||||||||||| |||||    
T  21646523 gtgtcacgatttggcaccctgcaaacc--agctcacggcatcacgaaatcgtgtcacgatgccaaa 21646586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 48408662 - 48408455
Alignment:
Q  28 aaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggata 125  Q
    |||||||||||| ||||||||| |||||||||||| ||| |  |||||||||||||||  | ||| |||  ||||| ||||||||||||||||   || |    
T  48408662 aaatctgcacaagaacacttaaatactagtcttccactgataaaatcgtgtcacgattggtacgtacgttacaaggtacgaccagtccttatcctagaaa 48408563  T
Q  126 cttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg-aaaccttagctcacggcacctc-caatcgtgtca 223  Q
    ||||||||||||||||    |||||||||||||||| ||  |||||| |||||||| |||||||| |||||  ||||||||||| | |  ||||||||||    
T  48408562 cttaacgagcaagtttgcaaatcgtgtcacgatttctcaagatcgtgtcacgatttggcaccctgcaaacc--agctcacggcatcacaaaatcgtgtca 48408465  T
Q  224 cgattccaaa 233  Q
    |||| |||||    
T  48408464 cgatgccaaa 48408455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 6594852 - 6594914
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6594852 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 6594914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 1562295 - 1562364
Alignment:
Q  17 ctctctccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||    
T  1562295 ctctctccttcaaatctgcacaagaacacataaatactagtcttcctctgttccaatcgtgtcacgattt 1562364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 18389062 - 18389121
Alignment:
Q  27 caaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18389062 caaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 18389121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 18392498 - 18392557
Alignment:
Q  27 caaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18392498 caaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 18392557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 233
Target Start/End: Complemental strand, 39731153 - 39730990
Alignment:
Q  72 atcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatc 169  Q
    |||||||||||||| |  ||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||    |||||||||||||| | ||  |||    
T  39731153 atcgtgtcacgattggtacgtacgtcccaaggtacgaccagtccttatcatggaaacttaacgagcaagtttgcaaatcgtgtcacgattcctcaagatc 39731054  T
Q  170 gtgccacgattttgcaccctg-aaaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
    ||| |||||||| |||||||| |||||  ||||||||||| | |  |||||||||||||| |||||    
T  39731053 gtgtcacgatttggcaccctgcaaacc--agctcacggcatcacaaaatcgtgtcacgatgccaaa 39730990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 12406640 - 12406749
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||||||||  | | ||||||| | ||| |||||||||||  |||||||||||||||||||||   |||||||||||||||||||  ||||    
T  12406640 aatcgtgtcacgatttgcaacggacccaaggta-gacaagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcg 12406738  T
Q  171 tgccacgattt 181  Q
    |||||||||||    
T  12406739 tgccacgattt 12406749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 233
Target Start/End: Original strand, 18409180 - 18409342
Alignment:
Q  73 tcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||| |  ||| |||| ||||| ||||||||||||||||| ||| ||||||| ||||||||| |  |||||||||||||||| ||  ||||    
T  18409180 tcgtgtcacgattggtacgtacgtcacaaggtacgaccagtccttatcatggaaacttaacaagcaagtttgagaatcgtgtcacgatttctcaagatcg 18409279  T
Q  171 tgccacgattttgcaccctg-aaaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
    || || ||||| |||||||| |||||  ||||||||||||| |  |||||||||||||| |||||    
T  18409280 tgtcatgatttggcaccctgcaaacc--agctcacggcaccacaaaatcgtgtcacgatgccaaa 18409342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 233
Target Start/End: Original strand, 25767327 - 25767489
Alignment:
Q  73 tcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||| |  ||| |||| ||||| |||||| |||||||||   || ||||||||||||||||| |  ||||||||||||||||||| |||||    
T  25767327 tcgtgtcacgattggtacgtacgtcacaaggcacgacctgtccttatcctagaaacttaacgagcaagtttgaaaatcgtgtcacgatttcccaaaatcg 25767426  T
Q  171 tgccacgattttgcaccctg-aaaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
    || |||||||| |||||||| |||||  ||||||||||| | |  |||||||||||||| |||||    
T  25767427 tgtcacgatttggcaccctgcaaacc--agctcacggcatcacgaaatcgtgtcacgatgccaaa 25767489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 72 - 181
Target Start/End: Original strand, 4873505 - 4873613
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    |||||||||||||||||  | | ||||||||| ||| |||||||||||  |||||||||||||||||||||   || ||||||||||||||||  |||||    
T  4873505 atcgtgtcacgatttgcaacggacccaaggaa-gacaagtccttatcagtgatacttaacgagcaagtttctgaattgtgtcacgatttcccaagatcgt 4873603  T
Q  172 gccacgattt 181  Q
    ||||||||||    
T  4873604 gccacgattt 4873613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 24024003 - 24023927
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattt 181  Q
    |||||||||||||||  |||||||||||||||||||||   |||||||||||||||||||  |||||||||||||||    
T  24024003 gaccagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattt 24023927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 24265861 - 24265782
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgc 184  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||||||    
T  24265861 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgc 24265782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 210
Target Start/End: Original strand, 18414056 - 18414194
Alignment:
Q  73 tcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||| |  ||| |||| ||||| ||||||||||||||||| ||| ||||||| ||||||||| |  ||||||| |||||||||||  ||||    
T  18414056 tcgtgtcacgattggtacgtacgtcacaaggtacgaccagtccttatcatggaaacttaacaagcaagtttgagaatcgtgttacgatttcccaagatcg 18414155  T
Q  171 tgccacgattttgcaccctg-aaaccttagctcacggcacc 210  Q
    || |||||||| || ||||| |||||  |||||||||||||    
T  18414156 tgtcacgatttggcgccctgcaaacc--agctcacggcacc 18414194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 24261005 - 24260926
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgc 184  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  |||||| |||||||||||    
T  24261005 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgtcacgattttgc 24260926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 164
Target Start/End: Original strand, 12397288 - 12397380
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttccca 164  Q
    ||||||||||||||||||  | | ||||||| | ||| |||||||||||  |||||||||||||||||||||   |||||||||||||||||||    
T  12397288 aatcgtgtcacgatttgcaacggacccaaggta-gacaagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttccca 12397380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 236
Target Start/End: Complemental strand, 31109287 - 31109123
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||| |||  | | ||||||| | ||| |||||||||||   ||||||||| ||||||||||   |||||||||||||||||||  |||||    
T  31109287 atcgtgtcacgatctgcaacggccccaaggca-gacaagtccttatcagttatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgt 31109189  T
Q  172 gccacgattttgcaccctgaaaccttagctcac-ggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||||||||| ||  |||| || ||||||| || ||||| |  ||||||| |||||| ||||||||    
T  31109188 gccacgatttggcgtcctgcaaacttagcttacaggcacttgaaatcgtgccacgatgccaaaatc 31109123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 16880476 - 16880555
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgc 184  Q
    |||||||||||||||  || ||||||| ||||||||||   |||||||||| ||||||||  |||||| |||||||||||    
T  16880476 gaccagtccttatcagagaaacttaaccagcaagtttctgaatcgtgtcacaatttcccaagatcgtgacacgattttgc 16880555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 16885331 - 16885410
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgc 184  Q
    |||||||||||||||  || ||||||| ||||||||||   |||||||||| ||||||||  |||||| |||||||||||    
T  16885331 gaccagtccttatcagagaaacttaaccagcaagtttctgaatcgtgtcacaatttcccaagatcgtgacacgattttgc 16885410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 47264102 - 47264158
Alignment:
Q  125 acttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattt 181  Q
    ||||||| ||||||||| |  |||||||||||||||| |||||| ||||||||||||    
T  47264102 acttaaccagcaagtttgaaaatcgtgtcacgatttcacacaattgtgccacgattt 47264158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 18390479 - 18390520
Alignment:
Q  187 cctgaaaccttagctcacggcacctccaatcgtgtcacgatt 228  Q
    |||| |||| |||||||||||||||||||||||| |||||||    
T  18390479 cctgcaaccctagctcacggcacctccaatcgtggcacgatt 18390520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 25767253 - 25767297
Alignment:
Q  19 ctctccttcaaa-tctgcacaataacacttaagtactagtcttcc 62  Q
    |||||||||||| ||||||||| ||||||||| ||||||||||||    
T  25767253 ctctccttcaaaatctgcacaagaacacttaaatactagtcttcc 25767297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 51)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 16546436 - 16546269
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||    
T  16546436 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattttcccaaat 16546337  T
Q  169 cgtgccacgattttgcaccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||| ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  16546336 cgtgtcacgaatttgcaccctgcaaccctagctcacggcacctccaatcgtgtcacgattccaaaatc 16546269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 40379898 - 40379731
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||    
T  40379898 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattttcccaaat 40379799  T
Q  169 cgtgccacgattttgcaccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||| ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  40379798 cgtgtcacgaatttgcaccctgcaaccctagctcacggcacctccaatcgtgtcacgattccaaaatc 40379731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 40382109 - 40381942
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||    
T  40382109 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattttcccaaat 40382010  T
Q  169 cgtgccacgattttgcaccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||| ||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  40382009 cgtgtcacgaatttgcaccctgcaaccctagctcacggcacctccaatcgtgtcacgattccaaaatc 40381942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 16544214 - 16544047
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||    
T  16544214 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattttcccaaat 16544115  T
Q  169 cgtgccacgattttgcaccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||| ||||| ||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||    
T  16544114 cgtgtcacgaatttgcaccctgtaaccctagctcacagcacctccaatcgtgtcacgattccaaaatc 16544047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 236
Target Start/End: Original strand, 22536588 - 22536799
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaagga 123  Q
    |||||||||||||||| ||||||| | |||||| |||||||||||  |||||||||||||| || || |  |||||| ||||||||||||||||||||||    
T  22536588 cttcaaatctgcacaagaacacttta-tactagccttcctctgttgaaatcgtgtcacgatctgtgtaccacccaagaaacgaccagtccttatcaagga 22536686  T
Q  124 tacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| |  |||||||||    
T  22536687 tacttaacgagcaagtttcacgatcgtgtcacgatttcccacaattgtgccacgattttgcaccctgcaacc-tagctcacggcaccccgaaatcgtgtc 22536785  T
Q  223 acgattccaaaatc 236  Q
    ||||| ||| ||||    
T  22536786 acgatgccacaatc 22536799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 25077926 - 25077759
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  25077926 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgatttcccacaat 25077827  T
Q  169 cgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||| ||||| |||||| ||||  |||| |||||||||||||||||||||| |||||||| ||||||||    
T  25077826 cgtgacacga-tttgcacccctacaaccctagctcacggcacctccaatcgcgtcacgatcccaaaatc 25077759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 25135895 - 25135728
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  25135895 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgatttcccacaat 25135796  T
Q  169 cgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||| ||||| |||||| ||||  |||| |||||||||||||||||||||| |||||||| ||||||||    
T  25135795 cgtgacacga-tttgcacccctacaaccctagctcacggcacctccaatcgcgtcacgatcccaaaatc 25135728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 71 - 236
Target Start/End: Complemental strand, 10593061 - 10592897
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    |||||||||||||| ||||| |  || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||  |||||    
T  10593061 aatcgtgtcacgatctgcgtaccaccgaagaaacgaccagtccttatcacggatacttaacgagcaagtttcacgatcgtgtcacgattttcccaaatcg 10592962  T
Q  171 tgccacgattttgcaccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||||||||||||||||||| |||| || |||||||||||   |||||||||||||| ||||||||    
T  10592961 tgccacgattttgcaccctgcaacc-tatctcacggcacccggaatcgtgtcacgataccaaaatc 10592897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 29720239 - 29720022
Alignment:
Q  19 ctctccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtcctta 116  Q
    ||||||||||||| ||||||| ||||||||| |||  | ||||| ||| |  |||||||||||||||  ||| |||||||||||| | ||||||||||||    
T  29720239 ctctccttcaaatttgcacaagaacacttaaatacatgccttccactgataaaatcgtgtcacgattggtgcatccgtcccaaggtatgaccagtcctta 29720140  T
Q  117 tcaaggatacttaacgagcaagttt-cacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcacggcacctc-ca 214  Q
    ||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| |||||||| |  | |||||||||||||| |  |    
T  29720139 tcatggaaacttaacgagcaagtttgcacaatcgtgtcacgatttcccacaatcgtgtcacgatttggcaccctgcagac-tagctcacggcaccacgaa 29720041  T
Q  215 atcgtgtcacgattccaaa 233  Q
    ||||||||||||| |||||    
T  29720040 atcgtgtcacgatgccaaa 29720022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 72 - 208
Target Start/End: Original strand, 24136266 - 24136401
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||  |||||    
T  24136266 atcgtgtcacgatttgcgtacgtcccaaggtatgaccagtccttatcaaggatacttaacgagcaagtttgaaaatcgtgtcacgatttcccaagatcgt 24136365  T
Q  172 gccacgattttgcaccctgaaaccttagctcacggca 208  Q
    | |||||||| |||||||| || | ||||||||||||    
T  24136366 gtcacgatttggcaccctgcaaac-tagctcacggca 24136401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 28807260 - 28807129
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| | ||||||||  ||||||||||||||||||||  |||||||||||||||||||||||| || ||| ||||||    
T  28807260 gaccagtccttatcagagatacttaaccaacaagtttctggatcgtgtcacgatttcccaagatcgtgccacgattttgcaccctgcaaacttggctcac 28807161  T
Q  205 ggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||| |||  |||||||||||||| |||||||    
T  28807160 ggcatctcagatcgtgtcacgattgcaaaatc 28807129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 73 - 233
Target Start/End: Original strand, 18442014 - 18442176
Alignment:
Q  73 tcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    |||||||||||||  ||||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||    |||||||||||||||||||||||||    
T  18442014 tcgtgtcacgattggtgcgttcgtcccaagaaacgaccagtccttatcatggaaacttaacgagcaagtttgcaaatcgtgtcacgatttcccacaatcg 18442113  T
Q  171 tgccacgattttgcaccctg-aaaccttagctcacggca-cctccaatcgtgtcacgattccaaa 233  Q
    || |||||||| |||||||| |||||  ||||||||||| | |  |||||||||||||| |||||    
T  18442114 tgtcacgatttggcaccctgcaaacc--agctcacggcatcatgaaatcgtgtcacgatgccaaa 18442176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 236
Target Start/End: Original strand, 27445349 - 27445513
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||||||||||| | ||||||| | ||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||  ||||    
T  27445349 aatcgtgtcacgatttgcgtctgacccaaggta-gaccagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcg 27445447  T
Q  171 tgccacgattttgcaccctgaaaccttagctcacggcacc-tccaatcgtgtcacgattccaaaatc 236  Q
    ||||||||||| ||  |||| || | ||||||||||| || |  |||||||||||||| ||||||||    
T  27445448 tgccacgatttggcgtcctgcaaac-tagctcacggccccttgaaatcgtgtcacgatgccaaaatc 27445513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 236
Target Start/End: Original strand, 27450192 - 27450356
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||||||||||| | ||||||| | ||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||  ||||    
T  27450192 aatcgtgtcacgatttgcgtctgacccaaggta-gaccagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcg 27450290  T
Q  171 tgccacgattttgcaccctgaaaccttagctcacggcacc-tccaatcgtgtcacgattccaaaatc 236  Q
    ||||||||||| ||  |||| || | ||||||||||| || |  |||||||||||||| ||||||||    
T  27450291 tgccacgatttggcgtcctgcaaac-tagctcacggccccttgaaatcgtgtcacgatgccaaaatc 27450356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 73 - 233
Target Start/End: Complemental strand, 26177685 - 26177523
Alignment:
Q  73 tcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||    |||||||||||||||||||  ||||    
T  26177685 tcgtgtcacgattggtgcgtccgtcccaaggtacgaccagtccttatcatggaaacttaacgagcaagtttgcaaatcgtgtcacgatttcccatgatcg 26177586  T
Q  171 tgccacgattttgcaccctg-aaaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
    || |||||||| |||||||| |||||  ||||||||||| | |  |||||||||||||| |||||    
T  26177585 tgtcacgatttggcaccctgcaaacc--agctcacggcatcacgaaatcgtgtcacgatgccaaa 26177523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 43592655 - 43592764
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||||||||||| | ||||||| | ||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||  ||||    
T  43592655 aatcgtgtcacgatttgcgtctgacccaaggta-gaccagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcg 43592753  T
Q  171 tgccacgattt 181  Q
    |||||||||||    
T  43592754 tgccacgattt 43592764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 43599100 - 43599209
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||||||||||| | ||||||| | ||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||  ||||    
T  43599100 aatcgtgtcacgatttgcgtctgacccaaggta-gaccagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcg 43599198  T
Q  171 tgccacgattt 181  Q
    |||||||||||    
T  43599199 tgccacgattt 43599209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 43604592 - 43604701
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||||||||||| | ||||||| | ||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||  ||||    
T  43604592 aatcgtgtcacgatttgcgtctgacccaaggta-gaccagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcg 43604690  T
Q  171 tgccacgattt 181  Q
    |||||||||||    
T  43604691 tgccacgattt 43604701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 43610084 - 43610193
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||||||||||| | ||||||| | ||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||  ||||    
T  43610084 aatcgtgtcacgatttgcgtctgacccaaggta-gaccagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcg 43610182  T
Q  171 tgccacgattt 181  Q
    |||||||||||    
T  43610183 tgccacgattt 43610193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 160
Target Start/End: Original strand, 29751526 - 29751615
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 160  Q
    |||||||||||||||||||| |  ||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29751526 aatcgtgtcacgatttgcgtacaacccaaggtatgaccagtccttatcaaggatacttaacgagcaagtttcacaatcgtgtcacgattt 29751615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 233
Target Start/End: Original strand, 9789605 - 9789752
Alignment:
Q  86 tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgca 185  Q
    ||||| |||| |||| |||||||||||||||||| ||| |||||||||||||||||    ||||||||||||||||||||||||||| |||||||| |||    
T  9789605 tgcgttcgtcgcaagaaacgaccagtccttatcatggaaacttaacgagcaagttttcaaatcgtgtcacgatttcccacaatcgtgtcacgatttggca 9789704  T
Q  186 ccctg-aaaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
    ||||| |||||  ||||||||||| | |  |||||||||||||| |||||    
T  9789705 ccctgcaaacc--agctcacggcatcacgaaatcgtgtcacgatgccaaa 9789752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 233
Target Start/End: Complemental strand, 26170576 - 26170414
Alignment:
Q  73 tcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||    ||  |||||||||||||||| ||||    
T  26170576 tcgtgtcacgattggtgcgtccgtcccaaggtacgaccagtccttatcatggaaacttaacgagcaagtttgcaaattatgtcacgatttcccacgatcg 26170477  T
Q  171 tgccacgattttgcaccctg-aaaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
    || |||||||| |||||||| |||||  ||||||||||| | |  |||||||||||||| |||||    
T  26170476 tgtcacgatttggcaccctgcaaacc--agctcacggcatcacaaaatcgtgtcacgataccaaa 26170414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 2785778 - 2785901
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||||||  || | || ||| ||||||    
T  2785778 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgcttccagcaaacttggctcac 2785877  T
Q  205 ggcacctccaatcgtgtcacgatt 228  Q
    |||| |||| ||||||||||||||    
T  2785878 ggcatctccgatcgtgtcacgatt 2785901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 15045096 - 15045226
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  ||||||||| |||||||||||   |||||||||||||||||||  ||||||||||||||| ||  |||| || | | ||||||    
T  15045096 gaccagtccttatcagtgatacttaatgagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgatttggcgtcctgcaaac-tggctcac 15045194  T
Q  205 ggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||| ||| |||||||||||||||||||||||    
T  15045195 ggcatctcaaatcgtgtcacgattccaaaatc 15045226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 16544280 - 16544217
Alignment:
Q  23 ccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16544280 ccttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 16544217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 16546502 - 16546439
Alignment:
Q  23 ccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16546502 ccttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 16546439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 25077992 - 25077929
Alignment:
Q  23 ccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25077992 ccttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 25077929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 25135961 - 25135898
Alignment:
Q  23 ccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25135961 ccttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 25135898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 33768587 - 33768710
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||||||  || | || ||| ||||||    
T  33768587 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgcttccagcaaacttggctcac 33768686  T
Q  205 ggcacctccaatcgtgtcacgatt 228  Q
    |||| |||| ||||||||||||||    
T  33768687 ggcatctccgatcgtgtcacgatt 33768710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 33791719 - 33791842
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||||||  || | || ||| ||||||    
T  33791719 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgcttccagcaaacttggctcac 33791818  T
Q  205 ggcacctccaatcgtgtcacgatt 228  Q
    |||| |||| ||||||||||||||    
T  33791819 ggcatctccgatcgtgtcacgatt 33791842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 40379971 - 40379901
Alignment:
Q  15 acctctctccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40379971 acctctctc-ttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 40379901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 40382182 - 40382112
Alignment:
Q  15 acctctctccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40382182 acctctctc-ttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 40382112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 30631764 - 30631895
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||||||||||||||   ||||||||||||||||||| ||||||| |||||||| ||  |||| || | | ||||||    
T  30631764 gaccagtccttatcagagatacttaacgagcaagtttctgaatcgtgtcacgatttcccaaaatcgtgtcacgatttggcgtcctgcaaac-tggctcac 30631862  T
Q  205 ggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    ||||||||  |||||||||||||| ||||||||    
T  30631863 ggcacctcgaaatcgtgtcacgatgccaaaatc 30631895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 74 - 236
Target Start/End: Complemental strand, 1456852 - 1456691
Alignment:
Q  74 cgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgc 173  Q
    ||||||||||||||| || | ||||||| | ||| ||||||||||| ||||||||||| ||||||||||   |||||||||||||||||||  |||||||    
T  1456852 cgtgtcacgatttgcatctgacccaaggta-gacaagtccttatcagggatacttaacaagcaagtttctgaatcgtgtcacgatttcccaagatcgtgc 1456754  T
Q  174 cacgattttgcaccctgaaaccttagctcacggcacc-tccaatcgtgtcacgattccaaaatc 236  Q
    |||||||| ||  |||| || | ||||||||||| || |  |||||||||||||| ||||||||    
T  1456753 cacgatttggcgtcctgtaaac-tagctcacggccccttgaaatcgtgtcacgatgccaaaatc 1456691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 37561130 - 37561008
Alignment:
Q  106 accagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcacg 205  Q
    ||||||||||||||  |||||||||| ||||||||||  ||||||||||||||||||||  |||||||||||||||  | || | ||| ||| |||||||    
T  37561130 accagtccttatcagagatacttaaccagcaagtttctggatcgtgtcacgatttcccaagatcgtgccacgatttgcctccatcaaaacttggctcacg 37561031  T
Q  206 gcacctccaatcgtgtcacgatt 228  Q
    ||| |||  ||||||||||||||    
T  37561030 gcatctcagatcgtgtcacgatt 37561008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 16407905 - 16407741
Alignment:
Q  28 aaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggata 125  Q
    |||||||||||| || |||||| |||||| | ||| ||| |  ||||||||||||||| |  ||| |||||||||| |||||| |||||||||| ||| |    
T  16407905 aaatctgcacaagaatacttaaatactagccctccactgataaaatcgtgtcacgattggagcgtacgtcccaaggtacgaccggtccttatcatggaaa 16407806  T
Q  126 cttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg 190  Q
    ||||||||||||||||    |||||||||||||| | ||  |||||| |||||||| ||||||||    
T  16407805 cttaacgagcaagtttgcaaatcgtgtcacgattcctcaagatcgtgtcacgatttggcaccctg 16407741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 35388079 - 35388169
Alignment:
Q  72 atcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 160  Q
    ||||||||||||||||  ||| |||||||||| | ||||||||||||||||||||||||||||||||||||| |  |||||||||| ||||    
T  35388079 atcgtgtcacgatttgaacgtacgtcccaaggtatgaccagtccttatcaaggatacttaacgagcaagtttgaaaatcgtgtcacaattt 35388169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 228
Target Start/End: Complemental strand, 37556308 - 37556186
Alignment:
Q  106 accagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcacg 205  Q
    ||||||||||||||  |||||||||| ||||||||||  ||||||||||| ||||||||  |||||||||||||||  | || | ||| ||| |||||||    
T  37556308 accagtccttatcagagatacttaaccagcaagtttctagatcgtgtcacaatttcccaagatcgtgccacgatttgcctccatcaaaacttggctcacg 37556209  T
Q  206 gcacctccaatcgtgtcacgatt 228  Q
    ||| |||  ||||||||||||||    
T  37556208 gcatctcagatcgtgtcacgatt 37556186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 29722332 - 29722255
Alignment:
Q  111 tccttatcaaggatacttaacgagcaagttt-cacgatcgtgtcacgatttcccacaatcgtgccacgattttgcacc 187  Q
    ||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| |||||    
T  29722332 tccttatcatggaaacttaacgagcaagtttgcacaatcgtgtcacgatttcccacaatcgtgtcacgatttggcacc 29722255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 189
Target Start/End: Original strand, 38219809 - 38219929
Alignment:
Q  71 aatcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    ||||||||||||||| |  ||| |||| ||||| ||||||||||||||||| ||| ||||||| ||||||||| |  |||||||||| ||||||||  ||    
T  38219809 aatcgtgtcacgattggaacgtacgtcacaaggtacgaccagtccttatcatggaaacttaacaagcaagtttgaaaatcgtgtcacaatttcccaagat 38219908  T
Q  169 cgtgccacgattttgcaccct 189  Q
    |||| |||||||| |||||||    
T  38219909 cgtgtcacgatttggcaccct 38219929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 31180637 - 31180741
Alignment:
Q  76 tgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgcca 175  Q
    |||||||||||||||| | |||||||   |||||||||||||||  ||||||||||||| |||| ||   |||||||||||||||||||  |||||||||    
T  31180637 tgtcacgatttgcgtctgacccaaggtt-gaccagtccttatcagtgatacttaacgagaaagtctctgaatcgtgtcacgatttcccaagatcgtgcca 31180735  T
Q  176 cgattt 181  Q
    ||||||    
T  31180736 cgattt 31180741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 16409341 - 16409208
Alignment:
Q  28 aaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggata 125  Q
    |||||||||||| ||||||||| ||||||   ||| ||  |  ||||||||||||||| |  ||| |||||||| | ||||||||||||||||| ||| |    
T  16409341 aaatctgcacaagaacacttaaatactagctctccactaataaaatcgtgtcacgattggagcgtacgtcccaatgtacgaccagtccttatcatggaaa 16409242  T
Q  126 cttaacgagcaagtttcacgatcgtgtcacgatt 159  Q
    ||||||||||||||||    ||||||||||||||    
T  16409241 cttaacgagcaagtttgcaaatcgtgtcacgatt 16409208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 29402728 - 29402658
Alignment:
Q  111 tccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattt 181  Q
    |||||||||  |||||||||||||||||||||   |||||||||||||||||||  |||||||||||||||    
T  29402728 tccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattt 29402658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 228
Target Start/End: Complemental strand, 31396674 - 31396551
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  || ||||||| | ||||| ||   |||||||||||||||||||  |||||| |||||||||||  || | || ||||||||||    
T  31396674 gaccagtccttatcagagaaacttaaccaacaagtgtctgaatcgtgtcacgatttcccaagatcgtggcacgattttgcttccagcaaacttagctcac 31396575  T
Q  205 ggcacctccaatcgtgtcacgatt 228  Q
     ||  |||| ||||||||||||||    
T  31396574 tgcctctccgatcgtgtcacgatt 31396551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 228
Target Start/End: Complemental strand, 31401531 - 31401408
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  || ||||||  ||||||||||   ||| |||||||||||||||  |||||| |||||||||||  || | || ||||||||||    
T  31401531 gaccagtccttatcagagaaacttaagcagcaagtttctgaatcatgtcacgatttcccaagatcgtggcacgattttgcttccagcaaacttagctcac 31401432  T
Q  205 ggcacctccaatcgtgtcacgatt 228  Q
     ||  |||| ||||||||||||||    
T  31401431 tgcctctccgatcgtgtcacgatt 31401408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 9789517 - 9789584
Alignment:
Q  19 ctctccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||||||||||||||||||| ||||||||| |||||| | ||| ||| |  ||||||||||||||||    
T  9789517 ctctccttcaaatctgcacaagaacacttaaatactagccctccactgataaaatcgtgtcacgattt 9789584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 18441941 - 18442008
Alignment:
Q  19 ctctccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||||||||||||||||||| ||||||||| |||||| | ||| ||| |  ||||||||||||||||    
T  18441941 ctctccttcaaatctgcacaagaacacttaaatactagccctccactgataaaatcgtgtcacgattt 18442008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 9352972 - 9352907
Alignment:
Q  125 acttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg 190  Q
    ||||||| ||||||||| |  |||||||||||||||| || ||||||||||||||||  |||||||    
T  9352972 acttaaccagcaagtttgaaaatcgtgtcacgatttcacagaatcgtgccacgatttgacaccctg 9352907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #49
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 10593128 - 10593084
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgtt 68  Q
    |||||||||||||||| ||||||||  ||||||||||||||||||    
T  10593128 cttcaaatctgcacaagaacacttacatactagtcttcctctgtt 10593084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #50
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 29722399 - 29722332
Alignment:
Q  19 ctctccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||||||||||||||||||| ||||||||| |||  | ||||| ||| |  ||||||||||||||||    
T  29722399 ctctccttcaaatctgcacaagaacacttaaatacatgccttccactgataaaatcgtgtcacgattt 29722332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #51
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 233
Target Start/End: Original strand, 29752265 - 29752333
Alignment:
Q  165 caatcgtgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
    ||||||||||||||||| |||||||| |||| |||||||||||| | |  |||||||||||||| |||||    
T  29752265 caatcgtgccacgatttggcaccctgcaacc-tagctcacggcagcacgaaatcgtgtcacgatgccaaa 29752333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 6080 - 5912
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacga-tttcccacaa 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  6080 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattttgccacaa 5981  T
Q  168 tcgtgccacgattttgcaccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||    
T  5980 tcgtgacacgaatttgcaccctgcaaccctagctcacggcacctccaatcgtgtcacgactccaaaatc 5912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 6145 - 6083
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6145 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 6083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 61)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 10209044 - 10208831
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaagga 123  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10209044 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaagga 10208945  T
Q  124 tacttaacgagcaagtttcacgatcgtgtcacga-tttcccacaatcgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgt 221  Q
    || ||||||||||||||||  ||||||||||||| ||||||| ||||||||||||| |||||| ||||| |||| || ||||||||| |   ||||| ||    
T  10208944 tatttaacgagcaagtttcttgatcgtgtcacgattttcccaaaatcgtgccacga-tttgcacccctgcaaccctaactcacggcatccgaaatcgcgt 10208846  T
Q  222 cacgattccaaaatc 236  Q
    |||||| ||||||||    
T  10208845 cacgataccaaaatc 10208831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 25637233 - 25637066
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25637233 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 25637134  T
Q  169 cgtgccacgattttgca-ccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    |||||||||| |||||| ||||| |||| |||||| | |||||||  |||||||||||||| ||| ||||    
T  25637133 cgtgccacga-tttgcacccctgcaaccctagctctc-gcacctcgaaatcgtgtcacgatgccacaatc 25637066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 54634930 - 54634763
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    |||||||||||| ||||||||| |  |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54634930 ccaatcgtgtcatgatttgcgtaccacccaagaaaagaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 54634831  T
Q  169 cgtgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    |||||||||||||||||||||| || |||||||||||||||| |  ||||||||||| || ||||||||    
T  54634830 cgtgccacgattttgcaccctgcaa-cttagctcacggcaccccgaaatcgtgtcacaatgccaaaatc 54634763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 71 - 236
Target Start/End: Complemental strand, 6716303 - 6716138
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||||  |||| |  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6716303 aatcgtgtcacgatccgcgtaccacccaagaaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 6716204  T
Q  171 tgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    || ||||||||||||||||| |||| |||||||||||||| |  |||||||||||||| ||||||||    
T  6716203 tgacacgattttgcaccctgcaacc-tagctcacggcaccccgaaatcgtgtcacgataccaaaatc 6716138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 71 - 228
Target Start/End: Complemental strand, 6718487 - 6718330
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||||  |||| |  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6718487 aatcgtgtcacgatccgcgtaccacccaagaaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 6718388  T
Q  171 tgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgatt 228  Q
    || ||||||||||||||||| |||| |||||||||||||| |  |||||||||||||||    
T  6718387 tgacacgattttgcaccctgcaacc-tagctcacggcaccccgaaatcgtgtcacgatt 6718330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 4598886 - 4599054
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttccca-caa 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  ||    
T  4598886 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgatttcccagaaa 4598985  T
Q  168 tcgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||||||||| |||||| ||||| |||| |||||||||||| |   ||||||||| |||| ||||||||    
T  4598986 tcgtgccacga-tttgcacccctgcaaccctagctcacggcatccgaaatcgtgtcgcgatcccaaaatc 4599054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 4601107 - 4601275
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttccca-caa 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  ||    
T  4601107 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgatttcccagaaa 4601206  T
Q  168 tcgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||||||||| |||||| ||||| |||| |||||||||||| |   ||||||||| |||| ||||||||    
T  4601207 tcgtgccacga-tttgcacccctgcaaccctagctcacggcatccgaaatcgtgtcgcgatcccaaaatc 4601275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 3617254 - 3617087
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||  |||    
T  3617254 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagccgttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattttcccaaat 3617155  T
Q  169 cgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||| ||||| |||||| ||||| |||| |||||||||||| |   |||||||||||||| ||||||||    
T  3617154 cgtgacacga-tttgcacccctgcaaccctagctcacggcatccgaaatcgtgtcacgataccaaaatc 3617087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 10056026 - 10055858
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacga-tttcccacaa 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| ||    
T  10056026 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattttcccaaaa 10055927  T
Q  168 tcgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||| ||||| |||||| ||||| |||| || ||||||||| |   ||||| |||||||| ||||||||    
T  10055926 tcgtgtcacga-tttgcacccctgcaaccctaactcacggcatccgaaatcgcgtcacgataccaaaatc 10055858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 10067136 - 10066968
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacga-tttcccacaa 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| ||    
T  10067136 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattttcccaaaa 10067037  T
Q  168 tcgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||| ||||| |||||| ||||| |||| || ||||||||| |   ||||| |||||||| ||||||||    
T  10067036 tcgtgtcacga-tttgcacccctgcaaccctaactcacggcatccgaaatcgcgtcacgataccaaaatc 10066968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 10211199 - 10211031
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacga-tttcccacaa 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| || ||||||| ||    
T  10211199 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcatgattttcccaaaa 10211100  T
Q  168 tcgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||||||||| |||||| ||||| |||| || ||||||||| |   ||||| |||||||| ||||||||    
T  10211099 tcgtgccacga-tttgcacccctgcaaccctaactcacggcatcctaaatcgcgtcacgataccaaaatc 10211031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 69 - 228
Target Start/End: Complemental strand, 45282786 - 45282627
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    |||||||||||||||| ||||| |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||    
T  45282786 ccaatcgtgtcacgatctgcgtaccacccaagaaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattttcccaaat 45282687  T
Q  169 cgtgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgatt 228  Q
    |||| ||||| ||||||||||| |||| |||||||||||||| |  |||||||||||||||    
T  45282686 cgtgtcacgaatttgcaccctgcaacc-tagctcacggcaccccgaaatcgtgtcacgatt 45282627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 10058248 - 10058080
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacga-tttcccacaa 167  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| ||    
T  10058248 ccaatcgtgtcacgatttgcgtacgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattttcccaaaa 10058149  T
Q  168 tcgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||| ||||| |||||| ||||| |||| || ||||||||| |   ||||| |||||||| ||||||||    
T  10058148 tcgtgtcacga-tttgcacccctgcaaccctaactcacggcatccgaaatcgcgtcacgataccaaaatc 10058080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 10060470 - 10060302
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacga-tttcccacaa 167  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| ||    
T  10060470 ccaatcgtgtcacgatttgcgtacgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattttcccaaaa 10060371  T
Q  168 tcgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||| ||||| |||||| ||||| |||| || ||||||||| |   ||||| |||||||| ||||||||    
T  10060370 tcgtgtcacga-tttgcacccctgcaaccctaactcacggcatccgaaatcgcgtcacgataccaaaatc 10060302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 10062692 - 10062524
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacga-tttcccacaa 167  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| ||    
T  10062692 ccaatcgtgtcacgatttgcgtacgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattttcccaaaa 10062593  T
Q  168 tcgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||| ||||| |||||| ||||| |||| || ||||||||| |   ||||| |||||||| ||||||||    
T  10062592 tcgtgtcacga-tttgcacccctgcaaccctaactcacggcatccgaaatcgcgtcacgataccaaaatc 10062524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 10064914 - 10064746
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacga-tttcccacaa 167  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| ||    
T  10064914 ccaatcgtgtcacgatttgcgtacgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattttcccaaaa 10064815  T
Q  168 tcgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||| ||||| |||||| ||||| |||| || ||||||||| |   ||||| |||||||| ||||||||    
T  10064814 tcgtgtcacga-tttgcacccctgcaaccctaactcacggcatccgaaatcgcgtcacgataccaaaatc 10064746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 72 - 236
Target Start/End: Original strand, 8477785 - 8477949
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||||||||| |  ||||||| | |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||  |||||    
T  8477785 atcgtgtcacgatttgcgtacaacccaaggtatgaccagtccttatcaaggatacttaacgagcaagtttctcaatcgtgtcacgatttcccaagatcgt 8477884  T
Q  172 gccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    |||||||||| ||| || | || | ||||||||||||||||  |||||||||||||| ||||||||    
T  8477885 gccacgatttggcatccagcaaac-tagctcacggcacctcgaaatcgtgtcacgatgccaaaatc 8477949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 236
Target Start/End: Complemental strand, 2671328 - 2671118
Alignment:
Q  27 caaatctgcacaataacact-taagtactagtcttcctctgttccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggata 125  Q
    ||||||||||||| |||||  ||  ||||||||||||||||    |||||||||||||||||||| |  ||||||| | |||||||||||||||||||||    
T  2671328 caaatctgcacaagaacacaatatatactagtcttcctctgaagaaatcgtgtcacgatttgcgtacaacccaaggtatgaccagtccttatcaaggata 2671229  T
Q  126 cttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcacggcacc-tccaatcgtgtcac 224  Q
    |||||||||||||||||   |||||||||||||||||||  ||||||||||||||| ||| |||| || | |||||||||||||| |  |||| ||||||    
T  2671228 cttaacgagcaagtttctaaatcgtgtcacgatttcccaagatcgtgccacgatttggcatcctgcaaac-tagctcacggcaccttgaaatcatgtcac 2671130  T
Q  225 gattccaaaatc 236  Q
    ||| ||||||||    
T  2671129 gatgccaaaatc 2671118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 72 - 236
Target Start/End: Complemental strand, 40372473 - 40372309
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    |||||| |||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||  |||||    
T  40372473 atcgtggcacgatttgcgtccgttcccaggtatgaccagtccttatcaaggatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgt 40372374  T
Q  172 gccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    |||||||||| ||  |||| || | ||||||||||||||||  |||||||||||||| ||||||||    
T  40372373 gccacgatttggcgtcctgcaaac-tagctcacggcacctcgaaatcgtgtcacgatgccaaaatc 40372309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 211
Target Start/End: Complemental strand, 8738736 - 8738602
Alignment:
Q  76 tgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgcca 175  Q
    ||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||  |||||||||    
T  8738736 tgtcacgatttgcgtccgttccaaggtatgaccagtccttatcaaggatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgtgcca 8738637  T
Q  176 cgattttgcaccctgaaaccttagctcacggcacct 211  Q
    |||||| ||  |||| || | |||||||||||||||    
T  8738636 cgatttagcgtcctgcaaac-tagctcacggcacct 8738602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 211
Target Start/End: Complemental strand, 9090974 - 9090840
Alignment:
Q  76 tgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgcca 175  Q
    ||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||  |||||||||    
T  9090974 tgtcacgatttgcgtccgttccaaggtatgaccagtccttatcaaggatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgtgcca 9090875  T
Q  176 cgattttgcaccctgaaaccttagctcacggcacct 211  Q
    |||||| ||  |||| || | |||||||||||||||    
T  9090874 cgatttagcgtcctgcaaac-tagctcacggcacct 9090840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 236
Target Start/End: Original strand, 7167664 - 7167829
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||||||||||| | ||||||| | |||||||||||||||  |||||||||||||||||||||   |||||||||||||||||||  ||||    
T  7167664 aatcgtgtcacgatttgcgtctgacccaaggtatgaccagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcg 7167763  T
Q  171 tgccacgattttgcaccctgaaaccttagctcacggcacc-tccaatcgtgtcacgattccaaaatc 236  Q
    ||||||||||| ||  |||| || | |||||||||||||| |  ||| |||||||||| ||||||||    
T  7167764 tgccacgatttggcgtcctgcaaac-tagctcacggcaccttgaaattgtgtcacgatgccaaaatc 7167829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 27352299 - 27352189
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||  |||| ||||||||||||||||   |||||||||||||||||||  ||||    
T  27352299 aatcgtgtcacgatttgcgtccgtcccaaggtatgaccagtccttatcagtgataattaacgagcaagtttctgaatcgtgtcacgatttcccaagatcg 27352200  T
Q  171 tgccacgattt 181  Q
    |||||||||||    
T  27352199 tgccacgattt 27352189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 800903 - 800787
Alignment:
Q  74 cgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||  ||||| ||||||||| |||||||| ||||||||| ||| |||||||||||||||||    ||||||||||||||||||||||||||    
T  800903 cgtgtcacgattggtgcgttcgtcccaagaaacgaccattccttatcatggaaacttaacgagcaagtttgcaaatcgtgtcacgatttcccacaatcgt 800804  T
Q  172 gccacgattttgcaccc 188  Q
    | |||||||| ||||||    
T  800803 gtcacgatttggcaccc 800787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 10056091 - 10056027
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgc 88  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10056091 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgc 10056027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 10058313 - 10058249
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgc 88  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10058313 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgc 10058249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 10060535 - 10060471
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgc 88  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10060535 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgc 10060471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 10062757 - 10062693
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgc 88  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10062757 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgc 10062693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 10064979 - 10064915
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgc 88  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10064979 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgc 10064915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 10067201 - 10067137
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgc 88  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10067201 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgc 10067137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 3617319 - 3617257
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3617319 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 3617257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 10211264 - 10211202
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10211264 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 10211202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 25637298 - 25637236
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25637298 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 25637236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 4601043 - 4601104
Alignment:
Q  25 ttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4601043 ttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 4601104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 2672603 - 2672472
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  |||||| |||||||||||  || | || ||| |||| |    
T  2672603 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtggcacgattttgcttccagcaaacttggctccc 2672504  T
Q  205 ggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||| |||| |||||||||||||| |||||||    
T  2672503 ggcatctccgatcgtgtcacgattacaaaatc 2672472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 28503535 - 28503427
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    |||||||||||||||||||| | |||||||   ||| ||||||||||| ||||||||||||||||||||||   || ||||||||||||||||  |||||    
T  28503535 atcgtgtcacgatttgcgtctgacccaaggtt-gacaagtccttatcagggatacttaacgagcaagtttctgaattgtgtcacgatttcccaagatcgt 28503437  T
Q  172 gccacgattt 181  Q
    ||||||||||    
T  28503436 gccacgattt 28503427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 22172846 - 22172715
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  ||| |||||||||||||||||   |||||||||||||||||||  ||||||||||||||| ||  |||| || | | ||||||    
T  22172846 gaccagtccttatcagagatccttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgatttggcgtcctgcaaac-tggctcac 22172748  T
Q  205 ggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    ||||||||  |||||||||||||| ||||||||    
T  22172747 ggcacctcgaaatcgtgtcacgatgccaaaatc 22172715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 233
Target Start/End: Original strand, 1306385 - 1306547
Alignment:
Q  73 tcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||| |  ||| |||| ||||| |||||| |||||||||  ||| ||||||||||||||||| |  |||||||||||||||||||  ||||    
T  1306385 tcgtgtcacgattggtacgtacgtcacaaggtacgacctgtccttatcctggaaacttaacgagcaagtttgagaatcgtgtcacgatttcccaagatcg 1306484  T
Q  171 tgccacgattttgcaccctg-aaaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
    || |||||||| |||||||| |||||  |||||||| |||| |  |||||||||||||| |||||    
T  1306485 tgtcacgatttggcaccctgcaaacc--agctcacgacaccacgaaatcgtgtcacgatgccaaa 1306547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 28501368 - 28501260
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||| |||||||||| | |||||||   ||| ||||||||||| ||||||||||||||||||||||   ||||||||||||||| |||  |||||    
T  28501368 atcgtgtcatgatttgcgtctgacccaaggtt-gacaagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcacgattttccaagatcgt 28501270  T
Q  172 gccacgattt 181  Q
    ||||||||||    
T  28501269 gccacgattt 28501260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 2676759 - 2676628
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  ||| |||||| ||||||||||   |||||||||||||||||||  |||||| |||||||||||  || | || ||| |||| |    
T  2676759 gaccagtccttatcagagattcttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtggcacgattttgcttccagcaaacttggctccc 2676660  T
Q  205 ggcacctccaatcgtgtcacgattccaaaatc 236  Q
    | || |||| |||||||||||||| |||||||    
T  2676659 gacatctccgatcgtgtcacgattacaaaatc 2676628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 8512643 - 8512722
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgc 184  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||||||    
T  8512643 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgc 8512722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 8517523 - 8517602
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgc 184  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||||||    
T  8517523 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgc 8517602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 18656844 - 18656976
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  |||||| |||||||| ||  |||| || |||   ||||    
T  18656844 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgtcacgatttggcgtcctgcaaacttgcttcac 18656943  T
Q  205 ggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    |||||| |  |||||||||||||| ||||||||    
T  18656944 ggcaccacgaaatcgtgtcacgatgccaaaatc 18656976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 7782513 - 7782603
Alignment:
Q  72 atcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 160  Q
    |||||||||||||| |  ||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||    |||||||||||||||    
T  7782513 atcgtgtcacgattggtacgttcgtcccaaggcacgaccagtccttatcatggaaacttaacgagcaagtttgcaaatcgtgtcacgattt 7782603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 24968520 - 24968599
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgc 184  Q
    |||||||||||||||  || ||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||||||    
T  24968520 gaccagtccttatcagagaaacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgc 24968599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 32475887 - 32475966
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgc 184  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  |||||| |||||||||||    
T  32475887 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgtcacgattttgc 32475966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 32480745 - 32480824
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgc 184  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  |||||| |||||||||||    
T  32480745 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgtcacgattttgc 32480824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 190
Target Start/End: Original strand, 23198309 - 23198430
Alignment:
Q  71 aatcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    ||||||||||||||| |  ||| |||| ||||| ||||||||||||||||  ||| |||||||||||||||||    |||||||||||||| | |  |||    
T  23198309 aatcgtgtcacgattggtacgtacgtcacaaggtacgaccagtccttatcctggaaacttaacgagcaagtttgcaaatcgtgtcacgattcctccaaat 23198408  T
Q  169 cgtgccacgattttgcaccctg 190  Q
    |||| |||||||| ||||||||    
T  23198409 cgtgtcacgatttggcaccctg 23198430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 26928344 - 26928180
Alignment:
Q  28 aaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggata 125  Q
    |||||||||||| ||||||||| ||| |||||||  ||| |  |||||||||||||||  | |||  ||| ||||| |||||| |||||||||  | | |    
T  26928344 aaatctgcacaagaacacttaaatacaagtcttcaactgataaaatcgtgtcacgattgatacgtaagtcacaaggtacgacctgtccttatcctgaaaa 26928245  T
Q  126 cttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg 190  Q
    |||||||||||||||| |  |||||||||||||| | ||  || ||| |||||||| ||||||||    
T  26928244 cttaacgagcaagtttgaaaatcgtgtcacgattccacaagattgtgtcacgatttggcaccctg 26928180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 228
Target Start/End: Original strand, 32143726 - 32143885
Alignment:
Q  71 aatcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    |||||||||||||||  | ||| |||| ||||| |||||| |||||||||  | | ||||||||||||||||| |  |||||||||||||| | ||  ||    
T  32143726 aatcgtgtcacgattgatacgtacgtcacaaggtacgacctgtccttatcttgaaaacttaacgagcaagtttgaaaatcgtgtcacgattccacaagat 32143825  T
Q  169 cgtgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgatt 228  Q
    |||| |||||||| |||||||| || | |||||||||||| | |  |||||||||||||||    
T  32143826 cgtgtcacgatttggcaccctgcaaac-tagctcacggcatcacaaaatcgtgtcacgatt 32143885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 4598813 - 4598865
Alignment:
Q  17 ctctctcctt-caaatctgcacaataacacttaagtactagtcttcctctgtt 68  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  4598813 ctctctcctttcaaatctgcacaagaacacttaagtactagtcttcctctgtt 4598865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 190
Target Start/End: Original strand, 23200508 - 23200629
Alignment:
Q  71 aatcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    ||||||||||||||| |  |||  ||| ||||| ||||||||||||||||  ||| |||||||||||||||||    |||||||||||||| | |  |||    
T  23200508 aatcgtgtcacgattggtacgtaagtcacaaggtacgaccagtccttatcctggaaacttaacgagcaagtttgcaaatcgtgtcacgattcctccaaat 23200607  T
Q  169 cgtgccacgattttgcaccctg 190  Q
    |||| |||||||| ||||||||    
T  23200608 cgtgtcacgatttggcaccctg 23200629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 23198247 - 23198305
Alignment:
Q  28 aaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||||||| ||||||||| |||||||||||| ||| |  ||||||||||||||||    
T  23198247 aaatctgcacaagaacacttaaatactagtcttccactgataaaatcgtgtcacgattt 23198305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 228
Target Start/End: Complemental strand, 27986103 - 27986000
Alignment:
Q  125 acttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg-aaaccttagctcacggcacctc-caatcgtgtc 222  Q
    ||||||| ||||||||| |  |||||||||||||| | |||||||||| |||||||| |||||||| |||||  ||||||||||| | |  |||||||||    
T  27986103 acttaaccagcaagtttgaaaatcgtgtcacgattccacacaatcgtgtcacgatttggcaccctgcaaacc--agctcacggcatcacaaaatcgtgtc 27986006  T
Q  223 acgatt 228  Q
    ||||||    
T  27986005 acgatt 27986000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 7782444 - 7782508
Alignment:
Q  22 tccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||||||||||||| ||||||||| |||||| | ||| ||| |  ||||||||||||||||    
T  7782444 tccttcaaatctgcacaagaacacttaaatactagccctccactgataaaatcgtgtcacgattt 7782508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 33386302 - 33386194
Alignment:
Q  125 acttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg-aaaccttagctcacggcacctc-caatcgtgtc 222  Q
    ||||||| ||||||||| |  |||||||||||||| | || ||||||| |||||||| |||||||| |||||  ||||||||||| | |  |||||||||    
T  33386302 acttaaccagcaagtttgaaaatcgtgtcacgattccacaaaatcgtgtcacgatttggcaccctgcaaacc--agctcacggcatcacaaaatcgtgtc 33386205  T
Q  223 acgattccaaa 233  Q
    ||||| |||||    
T  33386204 acgatgccaaa 33386194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 86
Target Start/End: Original strand, 1306306 - 1306360
Alignment:
Q  32 ctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||| ||||||||| |||||||||||| ||| |  ||||||||||||||||    
T  1306306 ctgcacaagaacacttaaatactagtcttccactgataaaatcgtgtcacgattt 1306360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 23200446 - 23200504
Alignment:
Q  28 aaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||||||| ||||||||| ||| |||||||| ||| |  ||||||||||||||||    
T  23200446 aaatctgcacaaaaacacttaaataccagtcttccactgataaaatcgtgtcacgattt 23200504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 189
Target Start/End: Original strand, 27453361 - 27453480
Alignment:
Q  71 aatcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    |||||||||||||||  | ||| |||| ||||| |||||||  |||||||  | | ||||||| ||||||||| |  |||||||||||||| | ||||||    
T  27453361 aatcgtgtcacgattgatacgtacgtcacaaggtacgaccaa-ccttatcctgaaaacttaaccagcaagtttgaaaatcgtgtcacgattccacacaat 27453459  T
Q  169 cgtgccacgattttgcaccct 189  Q
    | || |||||||| |||||||    
T  27453460 catgtcacgatttggcaccct 27453480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 6716369 - 6716326
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgtt 68  Q
    |||||||||||||||| ||||||| | ||||||||||||||||||    
T  6716369 cttcaaatctgcacaagaacacttta-tactagtcttcctctgtt 6716326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 6718553 - 6718510
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgtt 68  Q
    |||||||||||||||| ||||||| | ||||||||||||||||||    
T  6718553 cttcaaatctgcacaagaacacttta-tactagtcttcctctgtt 6718510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 15290409 - 15290251
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaagga 123  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15290409 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgcgtccgtcccaaggaactaccagtccttatcaagga 15290310  T
Q  124 tacttaacgagcaagtttcacgatcgtgtcacga-tttcccacaatcgtgccacgattt 181  Q
    |||||||||||||||||||  ||||||||||||| ||||||| ||||||| ||||||||    
T  15290309 tacttaacgagcaagtttcttgatcgtgtcacgattttcccaaaatcgtgtcacgattt 15290251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 15470778 - 15470620
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaagga 123  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15470778 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgcgtccgtcccaaggaactaccagtccttatcaagga 15470679  T
Q  124 tacttaacgagcaagtttcacgatcgtgtcacga-tttcccacaatcgtgccacgattt 181  Q
    |||||||||||||||||||  ||||||||||||| ||||||| ||||||| ||||||||    
T  15470678 tacttaacgagcaagtttcttgatcgtgtcacgattttcccaaaatcgtgtcacgattt 15470620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 70 - 228
Target Start/End: Complemental strand, 25689760 - 25689603
Alignment:
Q  70 caatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatc 169  Q
    |||||||||||||||||| || |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25689760 caatcgtgtcacgatttgtgtacaaaccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtgacgatttcccacaatc 25689661  T
Q  170 gtgccacgattttgcaccctgaaaccttagctcacggcacctccaatcgtgtcacgatt 228  Q
    ||||||||||||||||||||| |||| ||||||||||||||   |||||||||||||||    
T  25689660 gtgccacgattttgcaccctgcaacc-tagctcacggcacccgaaatcgtgtcacgatt 25689603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 3439307 - 3439141
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    ||||||||| |||||| ||||| |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3439307 ccaatcgtgccacgatatgcgtaccacccaagaaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttccca-aat 3439209  T
Q  169 cgtgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    |||| ||||||||||||||||| |||| |||||||||||||| |  |||||||||||||| ||| ||||    
T  3439208 cgtgtcacgattttgcaccctgcaacc-tagctcacggcaccccgaaatcgtgtcacgatgccacaatc 3439141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 42575688 - 42575856
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacga-tttcccacaa 167  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| ||    
T  42575688 ccaatcgtgtcacgatttgcgtccgtcccaaggaaagaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattttcccaaaa 42575787  T
Q  168 tcgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||| ||||| |||||| ||||| |||| || ||||||||| |   ||||||||| |||| ||||||||    
T  42575788 tcgtgacacga-tttgcacccctgcaaccctaactcacggcatccgaaatcgtgtcgcgatcccaaaatc 42575856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 72 - 236
Target Start/End: Complemental strand, 4759751 - 4759587
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||  |||||    
T  4759751 atcgtgtcacgatttgcgtccgttccaaggtatgaccagtccttatcaaggatacttaacgagcaagtttctaaatcgtgtcacgatttcccaagatcgt 4759652  T
Q  172 gccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    |||||||||| ||  |||| || | ||||||||||||||||  ||||||||||||||  |||||||    
T  4759651 gccacgatttggcgtcctgcaaac-tagctcacggcacctcgaaatcgtgtcacgatgtcaaaatc 4759587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 72 - 236
Target Start/End: Original strand, 30656065 - 30656229
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    |||||||||||||||||||| | |||||||   ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||  |||||    
T  30656065 atcgtgtcacgatttgcgtctgacccaaggtttgaccagtccttatcaaggatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgt 30656164  T
Q  172 gccacgattttgcaccctgaaaccttagctcacggcacc-tccaatcgtgtcacgattccaaaatc 236  Q
    |||||||||| ||  |||| || | |||||||||||||| |  |||||||||||||| ||||||||    
T  30656165 gccacgatttggcgtcctgcaaac-tagctcacggcaccttgaaatcgtgtcacgatgccaaaatc 30656229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 33037506 - 33037340
Alignment:
Q  70 caatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatc 169  Q
    ||||||||||||||||||||||||| |||||| | |||||||||||||||  ||||||||| |||||||||||   |||||||||||||||||||  |||    
T  33037506 caatcgtgtcacgatttgcgtccgttccaaggcatgaccagtccttatcagtgatacttaatgagcaagtttctgaatcgtgtcacgatttcccaagatc 33037407  T
Q  170 gtgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    ||| |||||||| ||  |||| || | ||||||||||||||||  |||||||||||||| ||||||||    
T  33037406 gtgtcacgatttggcgtcctgcaaac-tagctcacggcacctcgaaatcgtgtcacgatgccaaaatc 33037340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 39784509 - 39784378
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| | ||||||||   |||||||||||||||||||  ||||||||||||||||||| || | || ||| ||||||    
T  39784509 gaccagtccttatcagtgatacttaaccaacaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgcatccagcaaacttggctcac 39784410  T
Q  205 ggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||||||||||||||||||||||||||||||    
T  39784409 ggcacctccaatcgtgtcacgattccaaaatc 39784378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 236
Target Start/End: Complemental strand, 18852845 - 18852680
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    |||||||||||||| |||||| | ||||||| | |||||||||||||||  |||||||||||||||||||||   |||||||||||||||||||  ||||    
T  18852845 aatcgtgtcacgatctgcgtctgacccaaggtatgaccagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcg 18852746  T
Q  171 tgccacgattttgcaccctgaaaccttagctcacggcacc-tccaatcgtgtcacgattccaaaatc 236  Q
    ||||||||||| ||  |||| || | |||||||||||||| |  |||||||||||||| ||||||||    
T  18852745 tgccacgatttggcgtcctgcaaac-tagctcacggcaccttgaaatcgtgtcacgatgccaaaatc 18852680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 233
Target Start/End: Complemental strand, 1261634 - 1261471
Alignment:
Q  72 atcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatc 169  Q
    ||||||||||||||||  |||  ||||||||| | ||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||  |||    
T  1261634 atcgtgtcacgatttgaacgtatgtcccaaggtatgaccagtccttatcaaggatacttaacgagcaagtttgaaaatcgtgtcacgatttcccaagatc 1261535  T
Q  170 gtgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
    ||| |||||||| |||||||| || | |||||||||||| | |  |||||||||||||| |||||    
T  1261534 gtgtcacgatttggcaccctgcaaac-tagctcacggcatcacgaaatcgtgtcacgatgccaaa 1261471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 236
Target Start/End: Original strand, 36979797 - 36979961
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||||||||| |  ||||||| | |||||||||||||||  |||||||||||||||||||||   ||||||||||||||| |||  |||||    
T  36979797 atcgtgtcacgatttgcgtacaacccaaggtatgaccagtccttatcagagatacttaacgagcaagtttctgaatcgtgtcacgattttccaagatcgt 36979896  T
Q  172 gccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    |||||||||| ||  |||| || | ||||||||||||||||  |||||||||||||| ||||||||    
T  36979897 gccacgatttggcgtcctgcaaac-tagctcacggcacctcgaaatcgtgtcacgatgccaaaatc 36979961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 42575623 - 42575687
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgc 88  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42575623 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgc 42575687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 18870239 - 18870129
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    |||||||||||||| |||||| | ||||||| | ||||||||||||| |  |||||||||||||||||||||   |||||||||||||||||||  ||||    
T  18870239 aatcgtgtcacgatctgcgtctgacccaaggtatgaccagtccttattagtgatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcg 18870140  T
Q  171 tgccacgattt 181  Q
    |||||||||||    
T  18870139 tgccacgattt 18870129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 10683923 - 10683792
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||||||||||||||   |||||||||||||||||||  ||||||||||||||| ||  |||| || | ||||||||    
T  10683923 gaccagtccttatcagagatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgatttggcgtcctgcaaac-tagctcac 10683825  T
Q  205 ggcacc-tccaatcgtgtcacgattccaaaatc 236  Q
    |||||| |  |||||||||||||| ||||||||    
T  10683824 ggcaccttgaaatcgtgtcacgatgccaaaatc 10683792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 70 - 236
Target Start/End: Original strand, 6311717 - 6311882
Alignment:
Q  70 caatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatc 169  Q
    ||||||||||||||||||| || | |||||||   ||| ||||||||| |  |||||||||||||||||||||   |||||||||||||||||||  |||    
T  6311717 caatcgtgtcacgatttgcatctgacccaaggtt-gacaagtccttattagtgatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatc 6311815  T
Q  170 gtgccacgattttgcaccctgaaaccttagctcacggcacc-tccaatcgtgtcacgattccaaaatc 236  Q
    |||||||||||| ||  |||| || | |||||||||||||| |  |||||||||||||| ||||||||    
T  6311816 gtgccacgatttggcgtcctgcaaac-tagctcacggcaccttgaaatcgtgtcacgatgccaaaatc 6311882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 35745794 - 35745917
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||||||  ||   || ||| ||||||    
T  35745794 gaccagtccttatcatagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgcttccaacaaacttggctcac 35745893  T
Q  205 ggcacctccaatcgtgtcacgatt 228  Q
    |||| |||| ||||||||||||||    
T  35745894 ggcatctccgatcgtgtcacgatt 35745917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 70 - 228
Target Start/End: Complemental strand, 10688817 - 10688660
Alignment:
Q  70 caatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatc 169  Q
    ||||||||||||||||||| || | |||||||   ||| ||||||||| |  |||||||||||||||||||||   |||||||||||||||||||  |||    
T  10688817 caatcgtgtcacgatttgcatctgacccaaggtt-gacaagtccttattagtgatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatc 10688719  T
Q  170 gtgccacgattttgcaccctgaaaccttagctcacggcacc-tccaatcgtgtcacgatt 228  Q
    |||||||||||| ||  |||| || | |||||||||||||| |  |||||||||||||||    
T  10688718 gtgccacgatttggcgtcctgcaaac-tagctcacggcaccttgaaatcgtgtcacgatt 10688660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 86 - 187
Target Start/End: Complemental strand, 2627522 - 2627421
Alignment:
Q  86 tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgca 185  Q
    ||||| |||| |||| |||||||| ||||||||| ||| |||||||||||||||||    ||||||||||||||||||| ||||||| |||||||| |||    
T  2627522 tgcgtacgtcacaagaaacgaccaatccttatcatggaaacttaacgagcaagtttgcaaatcgtgtcacgatttcccaaaatcgtgtcacgatttggca 2627423  T
Q  186 cc 187  Q
    ||    
T  2627422 cc 2627421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 26288319 - 26288417
Alignment:
Q  92 cgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg 190  Q
    |||| ||||| ||||||||||||||||| ||| ||||||||||||||||| |  || ||||||||||||||||  || ||| |||||||| ||||||||    
T  26288319 cgtcacaaggtacgaccagtccttatcatggaaacttaacgagcaagtttgaaaattgtgtcacgatttcccaagattgtgtcacgatttggcaccctg 26288417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 26301576 - 26301674
Alignment:
Q  92 cgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg 190  Q
    |||| ||||| ||||||||||||||||| ||| ||||||||||||||||| |  || ||||||||||||||||  || ||| |||||||| ||||||||    
T  26301576 cgtcacaaggtacgaccagtccttatcatggaaacttaacgagcaagtttgaaaattgtgtcacgatttcccaagattgtgtcacgatttggcaccctg 26301674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 26313570 - 26313668
Alignment:
Q  92 cgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg 190  Q
    |||| ||||| ||||||||||||||||| ||| ||||||||||||||||| |  || ||||||||||||||||  || ||| |||||||| ||||||||    
T  26313570 cgtcacaaggtacgaccagtccttatcatggaaacttaacgagcaagtttgaaaattgtgtcacgatttcccaagattgtgtcacgatttggcaccctg 26313668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 7289644 - 7289536
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||||||| || |  |||||| | ||| ||||||||||| ||||||||||||||||||||||   ||||||||||||||| |||  |||||    
T  7289644 atcgtgtcacgatttgcatctgatccaaggta-gacaagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcacgattttccaagatcgt 7289546  T
Q  172 gccacgattt 181  Q
    | ||||||||    
T  7289545 gtcacgattt 7289536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 25327844 - 25327772
Alignment:
Q  109 agtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattt 181  Q
    |||||||||||  |||||||||||||||||||||   |||||||||||||||||||  ||||||||| |||||    
T  25327844 agtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccatgattt 25327772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 25689831 - 25689764
Alignment:
Q  19 ctctccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||| |||||||  ||||||| ||||||||| |||||| ||||||||||| |||||||||||||||||    
T  25689831 ctcttcttcaaagatgcacaagaacacttaaatactagccttcctctgttgcaatcgtgtcacgattt 25689764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 31043106 - 31043017
Alignment:
Q  73 tcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 160  Q
    ||||||||||||| |  ||| |||| ||||| |||||| |||||||||  ||| ||||||||||||||||| |  |||||||||||||||    
T  31043106 tcgtgtcacgattggtacgtacgtcacaaggtacgacctgtccttatcctggaaacttaacgagcaagtttgagaatcgtgtcacgattt 31043017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 31043189 - 31043131
Alignment:
Q  28 aaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||||||| ||||||||| |||||||||||| ||| |  ||||||||||||||||    
T  31043189 aaatctgcacaagaacacttaaatactagtcttccactgataaaatcgtgtcacgattt 31043131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 26288234 - 26288292
Alignment:
Q  28 aaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||||||| ||||||||| |||||| ||||| ||| |  ||||||||||||||||    
T  26288234 aaatctgcacaagaacacttaaatactagccttccactgataaaatcgtgtcacgattt 26288292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 26301491 - 26301549
Alignment:
Q  28 aaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||||||| ||||||||| |||||| ||||| ||| |  ||||||||||||||||    
T  26301491 aaatctgcacaagaacacttaaatactagccttccactgataaaatcgtgtcacgattt 26301549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 26313485 - 26313543
Alignment:
Q  28 aaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||||||| ||||||||| |||||| ||||| ||| |  ||||||||||||||||    
T  26313485 aaatctgcacaagaacacttaaatactagccttccactgataaaatcgtgtcacgattt 26313543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 2627610 - 2627573
Alignment:
Q  19 ctctccttcaaatctgcacaataacacttaagtactag 56  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  2627610 ctctccttcaaatctgcacaagaacacttaaatactag 2627573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 3439371 - 3439328
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgtt 68  Q
    |||||||||||||||| ||||||| | ||||||||||||||||||    
T  3439371 cttcaaatctgcacaagaacacttta-tactagtcttcctctgtt 3439328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 4090 - 4257
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  4090 ccaattgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgatttcccacaat 4189  T
Q  169 cgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||||||||| |||||| ||||| |||| |||||||||||||||  |||||||||||||||||||||||    
T  4190 cgtgccacga-tttgcacccctgcaaccctagctcacggcacctaaaatcgtgtcacgattccaaaatc 4257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 4025 - 4087
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  4025 cttcaaatctgcacaggaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 4087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 44203438 - 44203271
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||  |||    
T  44203438 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgattttcccaaat 44203339  T
Q  169 cgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||||||||| |||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  44203338 cgtgccacga-tttgcacccctgcaaccctagctcacggcacctccaatcgtgtcacgattccaaaatc 44203271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 9036223 - 9036056
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    |||||||||||||||| |||||    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||    
T  9036223 ccaatcgtgtcacgatctgcgtaacacccaagaaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttaacaaaat 9036124  T
Q  169 cgtgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaaatc 236  Q
     ||| ||||| ||||||||||| |||| |||||||||||||| |  |||||||||||||| ||||||||    
T  9036123 agtgacacgaatttgcaccctgcaacc-tagctcacggcaccccgaaatcgtgtcacgataccaaaatc 9036056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 79 - 233
Target Start/End: Original strand, 20622610 - 20622764
Alignment:
Q  79 cacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacga 178  Q
    |||||||||||| |  ||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  20622610 cacgatttgcgtaccacccaaggtatgaccagtccttatcaaggatacttaacgagcaagtttcacaatcgtgtcacgatttcccacaatcgtgtcacga 20622709  T
Q  179 ttttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
    ||| |||||||| |  | |||||||||||||| |  |||||||||||||| |||||    
T  20622710 tttggcaccctgcagac-tagctcacggcaccacgaaatcgtgtcacgatgccaaa 20622764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 44023561 - 44023430
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||||||| || | || ||| ||||||    
T  44023561 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgcatccagcaaacttggctcac 44023462  T
Q  205 ggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||||||||||||||||||||||||||||||    
T  44023461 ggcacctccaatcgtgtcacgattccaaaatc 44023430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 72 - 233
Target Start/End: Complemental strand, 40282179 - 40282015
Alignment:
Q  72 atcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagttt-cacgatcgtgtcacgatttcccacaat 168  Q
    ||||||||||||||  ||| |||||||||||| | ||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||| |||||||    
T  40282179 atcgtgtcacgattggtgcatccgtcccaaggtatgaccagtccttatcatggaaacttaacgagcaagtttgcacaatcgtgtcacgatttaccacaat 40282080  T
Q  169 cgtgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
    |||| |||||||| |||||||| |||| |||||||||||||| |  |||||||||||||| |||||    
T  40282079 cgtgtcacgatttggcaccctgcaacc-tagctcacggcaccactaaatcgtgtcacgatgccaaa 40282015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 72 - 228
Target Start/End: Complemental strand, 24793864 - 24793708
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    |||||||||||||||||||| | |||||||   ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||  |||||    
T  24793864 atcgtgtcacgatttgcgtctgacccaaggtttgaccagtccttatcaaggatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgt 24793765  T
Q  172 gccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgatt 228  Q
    |||||||||| ||  |||| || | ||||||||||||||||  |||||||||||||||    
T  24793764 gccacgatttggcgtcctgcaaac-tagctcacggcacctcgaaatcgtgtcacgatt 24793708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 1054698 - 1054567
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||| ||  |||| || ||| ||||||    
T  1054698 gaccagtccttatcagtgatacttaactagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgatttggcgtcctgcaaacttggctcac 1054599  T
Q  205 ggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||||||||||||| ||||||||||||||||    
T  1054598 ggcacctccaatcgtatcacgattccaaaatc 1054567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 19361176 - 19360969
Alignment:
Q  28 aaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggata 125  Q
    |||||||||||| ||||||||| |||||||||||| ||| |  ||||||||||||||| |  ||| |||| ||||| |||||| |||||||||  ||| |    
T  19361176 aaatctgcacaagaacacttaaatactagtcttccactgataaaatcgtgtcacgattggtacgtacgtcacaaggtacgacctgtccttatcctggaaa 19361077  T
Q  126 cttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg-aaaccttagctcacggcacctc-caatcgtgtca 223  Q
    |||||||||||||||| |  |||||||||||||||||||  |||||| |||||||| |||||||| |||||  ||||||||||| | |  ||||||||||    
T  19361076 cttaacgagcaagtttgaaaatcgtgtcacgatttcccaagatcgtgtcacgatttggcaccctgcaaacc--agctcacggcatcacaaaatcgtgtca 19360979  T
Q  224 cgattccaaa 233  Q
    |||| |||||    
T  19360978 cgataccaaa 19360969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 72 - 211
Target Start/End: Complemental strand, 24787042 - 24786904
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    |||||||||||||||||||| | |||||||   ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||  |||||    
T  24787042 atcgtgtcacgatttgcgtctgacccaaggtttgaccagtccttatcaaggatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgt 24786943  T
Q  172 gccacgattttgcaccctgaaaccttagctcacggcacct 211  Q
    |||||||||| ||  |||| || | |||||||||||||||    
T  24786942 gccacgatttggcgtcctgcaaac-tagctcacggcacct 24786904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 105 - 228
Target Start/End: Complemental strand, 25439583 - 25439460
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||  ||||||||||||||||||||  ||||||||||||||||||| |||| || ||| ||||||    
T  25439583 gaccagtccttatcagagatacttaaccagcaagtttctggatcgtgtcacgatttcccaagatcgtgccacgattttgcatcctgcaaacttggctcac 25439484  T
Q  205 ggcacctccaatcgtgtcacgatt 228  Q
    |||| ||| |||||||||||||||    
T  25439483 ggcatctcaaatcgtgtcacgatt 25439460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 39445898 - 39446029
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||||||||||||||  |||||||||| |||||||||  ||||||||||||||| ||  |||| || ||| ||||||    
T  39445898 gaccagtccttatcagtgatacttaacgagcaagtttctggatcgtgtcatgatttcccaagatcgtgccacgatttggcgtcctgcaaacttggctcac 39445997  T
Q  205 ggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||| ||| |||||||||||||||||||||||    
T  39445998 ggcatctcaaatcgtgtcacgattccaaaatc 39446029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 21053760 - 21053642
Alignment:
Q  72 atcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagttt-cacgatcgtgtcacgatttcccacaat 168  Q
    ||||||||||||||  ||| |||||| ||||| | ||||||||||||||| ||| ||||||||||||||||| ||| |||||||||||||||||||||||    
T  21053760 atcgtgtcacgattggtgcatccgtctcaaggtatgaccagtccttatcatggaaacttaacgagcaagtttgcacaatcgtgtcacgatttcccacaat 21053661  T
Q  169 cgtgccacgattttgcacc 187  Q
    |||| |||||||| |||||    
T  21053660 cgtgtcacgatttggcacc 21053642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 105 - 228
Target Start/End: Complemental strand, 25444776 - 25444653
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| | ||||||||  ||||||||||||||||||||  ||||||||||||||||||| |||  || ||| ||||||    
T  25444776 gaccagtccttatcagagatacttaaccaacaagtttctggatcgtgtcacgatttcccaagatcgtgccacgattttgcatcctacaaacttggctcac 25444677  T
Q  205 ggcacctccaatcgtgtcacgatt 228  Q
    |||| ||| |||||||||||||||    
T  25444676 ggcatctcaaatcgtgtcacgatt 25444653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 44203504 - 44203441
Alignment:
Q  23 ccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44203504 ccttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 44203441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 51765254 - 51765090
Alignment:
Q  28 aaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggata 125  Q
    |||||||||||| ||||||||| |||||| ||||| ||| |  ||||||||||||||| |  ||| |||| ||||| | ||||||||||||||| ||| |    
T  51765254 aaatctgcacaagaacacttaaatactagccttccactgataaaatcgtgtcacgattggtacgtacgtcacaaggtatgaccagtccttatcatggaaa 51765155  T
Q  126 cttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg 190  Q
    ||||||||||||||||    |||||||||||||| | ||  |||||| |||||||| ||||||||    
T  51765154 cttaacgagcaagtttgcaaatcgtgtcacgattcctcaagatcgtgtcacgatttggcaccctg 51765090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 41391002 - 41391132
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  ||||||||| |||||||||||   ||| |||||||||||||||  ||||||||||||||| ||  |||| || | | ||||||    
T  41391002 gaccagtccttatcagtgatacttaatgagcaagtttctgaatcatgtcacgatttcccaagatcgtgccacgatttggcgtcctgcaaac-tggctcac 41391100  T
Q  205 ggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||| ||| |||||||||||||||||||||||    
T  41391101 ggcatctcaaatcgtgtcacgattccaaaatc 41391132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 41398657 - 41398779
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||| ||||||||| |||||||||||   |||||||||||||||||||  ||||||||||||||| ||  |||| || | | ||||||    
T  41398657 gaccagtccttatcaatgatacttaatgagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgatttggcgtcctgcaaac-tggctcac 41398755  T
Q  205 ggcacctccaatcgtgtcacgatt 228  Q
    |||| ||| |||||||||||||||    
T  41398756 ggcatctcaaatcgtgtcacgatt 41398779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 9987005 - 9986889
Alignment:
Q  72 atcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatc 169  Q
    ||||||||||||||  ||| |||||||||||| | ||||||||||||| | ||| |||||||||||||||||    ||||||||||||||||||| ||||    
T  9987005 atcgtgtcacgattggtgcatccgtcccaaggtatgaccagtccttattatggaaacttaacgagcaagtttgcaaatcgtgtcacgatttcccaaaatc 9986906  T
Q  170 gtgccacgattttgcac 186  Q
    ||| |||||||| ||||    
T  9986905 gtgtcacgatttggcac 9986889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 24202450 - 24202360
Alignment:
Q  72 atcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 160  Q
    ||||||||||||||||  ||| |||||||||  | ||||||||||||||||||||||||||||||||||||| |  |||||||||||||||    
T  24202450 atcgtgtcacgatttgaacgtgcgtcccaagatatgaccagtccttatcaaggatacttaacgagcaagtttgaaaatcgtgtcacgattt 24202360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 233
Target Start/End: Complemental strand, 19365987 - 19365825
Alignment:
Q  73 tcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||| |  ||| |||| ||| | |||||| |||||||||  ||| | ||||||||||||||| |  |||||||||||||||||||  ||||    
T  19365987 tcgtgtcacgattggtacgtacgtcacaatgtacgacctgtccttatcctggaaaattaacgagcaagtttgaaaatcgtgtcacgatttcccaagatcg 19365888  T
Q  171 tgccacgattttgcaccctg-aaaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
    || |||||||| |||||||| |||||  ||||||||||| | |  |||||||||||||| |||||    
T  19365887 tgtcacgatttggcaccctgcaaacc--agctcacggcatcacaaaatcgtgtcacgatgccaaa 19365825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 43988133 - 43988054
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgc 184  Q
    |||||||||||||||  |||||||||| ||||||||||   ||||||||||||||| |||  |||||| |||||||||||    
T  43988133 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttaccaagatcgtggcacgattttgc 43988054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 9036287 - 9036226
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||||||||||| ||||||| | ||||||||||||||||||  ||||||||||||||||    
T  9036287 cttcaaatctgcacaagaacacttta-tactagtcttcctctgttgaaatcgtgtcacgattt 9036226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 19366051 - 19365993
Alignment:
Q  28 aaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||||||| ||||||||| |||||||||||| ||| |  ||||||||||||||||    
T  19366051 aaatctgcacaagaacacttaaatactagtcttccactgataaaatcgtgtcacgattt 19365993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 24202513 - 24202455
Alignment:
Q  28 aaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||| ||||||| ||||||||| |||||| ||||||||| | |||||||||||||||||    
T  24202513 aaatatgcacaagaacacttaaatactagccttcctctgatacaatcgtgtcacgattt 24202455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 19358587 - 19358530
Alignment:
Q  28 aaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatt 85  Q
    |||||||||||| ||||||||| |||||||||||| ||| |  |||||||||||||||    
T  19358587 aaatctgcacaagaacacttaaatactagtcttccactgataaaatcgtgtcacgatt 19358530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 41)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 27647732 - 27647521
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaagga 123  Q
    |||||||||||||||| ||||||| | ||||||||||||||| || ||||||||||||||| ||||| |  |||||| |||||||||||  |||||||||    
T  27647732 cttcaaatctgcacaagaacacttta-tactagtcttcctctattgcaatcgtgtcacgatctgcgtaccacccaagaaacgaccagtcaatatcaagga 27647634  T
Q  124 tacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtc 222  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||| |  |||||||||    
T  27647633 tacttaacgagcaagtttcacgatcgtgtcacgatttctcacaatcgtgccacgattttgcaccctgcaacc-tagctcacggcaccccgaaatcgtgtc 27647535  T
Q  223 acgattccaaaatc 236  Q
    ||||| ||| ||||    
T  27647534 acgatgccacaatc 27647521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 6136327 - 6136494
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  6136327 ccaattgtgtcacgatttgcttccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgatttcccacaat 6136426  T
Q  169 cgtgccacgattttgcaccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||||||||||||   ||||| |||| |||||||||||| |   ||||||||| |||||||||||||    
T  6136427 cgtgccacgattttcacccctgcaaccctagctcacggcatccgaaatcgtgtctcgattccaaaatc 6136494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 69 - 235
Target Start/End: Complemental strand, 25421017 - 25420851
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||    
T  25421017 ccaatcatgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattttcccaaat 25420918  T
Q  169 cgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaat 235  Q
    |||||||||| |||||| ||||| |||| |||||||||||| |   |||||||||||| | |||||||    
T  25420917 cgtgccacga-tttgcacccctgcaaccctagctcacggcatccgaaatcgtgtcacggtcccaaaat 25420851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 71 - 236
Target Start/End: Original strand, 16578883 - 16579048
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    |||||||||||||| ||||| |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||    
T  16578883 aatcgtgtcacgatctgcgtaccacccaagaaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattttcccaaatcg 16578982  T
Q  171 tgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    |||||||||||||||||||| |||| |||||||||||||| |  |||||||||||||| ||||||||    
T  16578983 tgccacgattttgcaccctgcaacc-tagctcacggcaccccgaaatcgtgtcacgataccaaaatc 16579048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 71 - 236
Target Start/End: Complemental strand, 16616497 - 16616332
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    |||||||||||||| ||||| |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||    
T  16616497 aatcgtgtcacgatctgcgtaccacccaagaaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattttcccaaatcg 16616398  T
Q  171 tgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    |||||||||||||||||||| |||| |||||||||||||| |  |||||||||||||| ||||||||    
T  16616397 tgccacgattttgcaccctgcaacc-tagctcacggcaccccgaaatcgtgtcacgataccaaaatc 16616332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 71 - 236
Target Start/End: Complemental strand, 16554672 - 16554507
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    |||||||||||||| ||||| |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||    
T  16554672 aatcgtgtcacgatctgcgtaccacccaagaaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattttcccaaatcg 16554573  T
Q  171 tgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    |||||| ||||||||||||| |||| |||||||||||||| |  |||||||||||||| ||||||||    
T  16554572 tgccacaattttgcaccctgtaacc-tagctcacggcaccccgaaatcgtgtcacgataccaaaatc 16554507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 71 - 236
Target Start/End: Complemental strand, 16631228 - 16631063
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    |||||||||||||| ||||| |  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||    
T  16631228 aatcgtgtcacgatctgcgtaccacccaagaaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattttcccaaatcg 16631129  T
Q  171 tgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    |||||| ||||||||||||| |||| |||||||||||||| |  |||||||||||||| ||||||||    
T  16631128 tgccacaattttgcaccctgtaacc-tagctcacggcaccccgaaatcgtgtcacgataccaaaatc 16631063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 69 - 208
Target Start/End: Original strand, 33342467 - 33342607
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttccca-caa 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||  ||    
T  33342467 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgatttcccagaaa 33342566  T
Q  168 tcgtgccacgattttgca-ccctgaaaccttagctcacggca 208  Q
    ||||||||||| |||||| ||||| |||| ||||||||||||    
T  33342567 tcgtgccacga-tttgcacccctgcaaccctagctcacggca 33342607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 13151070 - 13150902
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacga-tttcccacaa 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| ||    
T  13151070 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattttcccaaaa 13150971  T
Q  168 tcgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||| ||||| |||||| ||||| |||| || ||||||||| |   ||||| |||||||| ||||||||    
T  13150970 tcgtgtcacga-tttgcacccctgcaaccctaactcacggcatccgaaatcgcgtcacgataccaaaatc 13150902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 34164666 - 34164552
Alignment:
Q  68 tccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacga-tttcccaca 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| |    
T  34164666 tccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattttcccaaa 34164567  T
Q  167 atcgtgccacgattt 181  Q
    |||||| ||||||||    
T  34164566 atcgtgacacgattt 34164552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 34166887 - 34166719
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacga-tttcccacaa 167  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| ||    
T  34166887 ccaatcgtgtcacgatttgcgtacgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattttcccaaaa 34166788  T
Q  168 tcgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||| ||||| |||||| ||||| |||| || ||||||||| |   ||||| |||||||| ||||||||    
T  34166787 tcgtgtcacga-tttgcacccctgcaaccctaactcacggcatccgaaatcgcgtcacgataccaaaatc 34166719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 6027054 - 6026942
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||| ||  |||    
T  6027054 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccggtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgattttcccaaat 6026955  T
Q  169 cgtgccacgattt 181  Q
    |||||||||||||    
T  6026954 cgtgccacgattt 6026942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 24 - 181
Target Start/End: Complemental strand, 25421176 - 25421000
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacg--------------------atttgcgtccgtcccaaggaa 103  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||                    |||||||||||||||||||||    
T  25421176 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattttcccaatcatgtcacgatttgcgtccgtcccaaggaa 25421077  T
Q  104 cgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattt 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||||    
T  25421076 cgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattttcc-caatcatgtcacgattt 25421000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 51 - 228
Target Start/End: Original strand, 5266434 - 5266611
Alignment:
Q  51 tactagtcttcctctgttccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgt 150  Q
    ||||||||||||||||   |||||||||||||||||||||||||  ||||| | |||||||||||||||||||||||||| |||||||||||   |||||    
T  5266434 tactagtcttcctctgaagcaatcgtgtcacgatttgcgtccgtttcaaggtatgaccagtccttatcaaggatacttaatgagcaagtttctgaatcgt 5266533  T
Q  151 gtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgatt 228  Q
    ||||||||||||||  ||||||||||||||| ||  |||| || | ||||||||||||||||  |||||||||||||||    
T  5266534 gtcacgatttcccaagatcgtgccacgatttggcgtcctgcaaac-tagctcacggcacctcgaaatcgtgtcacgatt 5266611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 71 - 228
Target Start/End: Complemental strand, 16652915 - 16652758
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    |||||||||||||| ||||| |  |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||  |||||    
T  16652915 aatcgtgtcacgatctgcgtaccacccaagaaacgaccagtccttatcaaggatacttaacgagcaagtttcacgattgtgtcacgattttcccaaatcg 16652816  T
Q  171 tgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgatt 228  Q
    | |||||| ||||||||||  |||| |||||||||||||| |  |||||||||||||||    
T  16652815 ttccacgactttgcaccctacaacc-tagctcacggcaccccgaaatcgtgtcacgatt 16652758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 2171835 - 2172047
Alignment:
Q  23 ccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaa 120  Q
    ||||||||||||||||| ||||||||| |||||| ||||| ||| |  ||||||||||||||| |  ||| |||| ||||| |||||| |||||||||      
T  2171835 ccttcaaatctgcacaagaacacttaaatactagccttccactgataaaatcgtgtcacgattggtacgtacgtcacaaggtacgacctgtccttatctt 2171934  T
Q  121 ggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg-aaaccttagctcacggcacctc-caatcg 218  Q
    ||| ||||||||||||||||| || |||||||||||||||||||  |||||| |||||||| |||||||| |||||  ||||||||||| | |  |||||    
T  2171935 ggaaacttaacgagcaagttttacaatcgtgtcacgatttcccaagatcgtgtcacgatttggcaccctgcaaacc--agctcacggcatcacgaaatcg 2172032  T
Q  219 tgtcacgattccaaa 233  Q
    ||||||||| |||||    
T  2172033 tgtcacgatgccaaa 2172047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 6438899 - 6439030
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  |||||||||||||| |||| || | || ||| ||||||    
T  6438899 gaccagtccttatcagtgatacttaactagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattatgcatccagcaaacttggctcac 6438998  T
Q  205 ggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||||||||||||||||||||||||||||||    
T  6438999 ggcacctccaatcgtgtcacgattccaaaatc 6439030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 190
Target Start/End: Complemental strand, 5674447 - 5674329
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||||||||| |||||||||| | ||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||  || ||    
T  5674447 atcgtgtcacgatttgcgtacgtcccaaggtatgaccagtccttatcacggatacttaacgagcaagtttcaaaatcgtgtcacgatttcccaagattgt 5674348  T
Q  172 gccacgattttgcaccctg 190  Q
    | |||||||| ||||||||    
T  5674347 gtcacgatttggcaccctg 5674329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 105 - 228
Target Start/End: Complemental strand, 28155255 - 28155132
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||  ||||||||||||||||||||  |||||||||||||||||||||||| || ||| ||||||    
T  28155255 gaccagtccttatcagagatacttaaccagcaagtttctggatcgtgtcacgatttcccaagatcgtgccacgattttgcaccctgcaaacttggctcac 28155156  T
Q  205 ggcacctccaatcgtgtcacgatt 228  Q
    |||| |||  ||||||||||||||    
T  28155155 ggcatctcagatcgtgtcacgatt 28155132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 6097732 - 6097877
Alignment:
Q  17 ctctctccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtcct 114  Q
    ||||| ||||||||||||||||| ||||||||| |||||||||||| ||| |  |||||||||||||||  ||||| |||||| ||| ||||||||||||    
T  6097732 ctctcaccttcaaatctgcacaagaacacttaaatactagtcttcccctgataaaatcgtgtcacgattggtgcgtacgtccccaggtacgaccagtcct 6097831  T
Q  115 tatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 160  Q
    ||||| ||| |||||||||||||||||    |||||||||||||||    
T  6097832 tatcatggaaacttaacgagcaagtttgcaaatcgtgtcacgattt 6097877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 411903 - 411785
Alignment:
Q  75 gtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagttt-cacgatcgtgtcacgatttcccacaatcgt 171  Q
    |||||||||||  ||| |||||||||||| | ||||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  411903 gtgtcacgattggtgcatccgtcccaaggtatgaccagtccttatcatggaaacttaacgagcaagtttgcacaatcgtgtcacgatttcccacaatcgt 411804  T
Q  172 gccacgattttgcaccctg 190  Q
    | |||||||| ||||||||    
T  411803 gtcacgatttggcaccctg 411785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 228
Target Start/End: Original strand, 16839114 - 16839269
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||| |||  | |||||||||   |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  |||||    
T  16839114 atcgtgtcacgatctgcaacggtcccaaggtt-gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgt 16839212  T
Q  172 gccacgattttgcaccctgaaaccttagctcacggcacctccaatcgtgtcacgatt 228  Q
    |||||||||||||  || | || ||| |||||||||| |||| ||||||||||||||    
T  16839213 gccacgattttgcttccagcaaacttggctcacggcatctccgatcgtgtcacgatt 16839269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 33342402 - 33342466
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgc 88  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33342402 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgc 33342466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 34166952 - 34166888
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgc 88  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34166952 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgatttgc 34166888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 6027127 - 6027057
Alignment:
Q  15 acctctctccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6027127 acctctctc-ttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 6027057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 228
Target Start/End: Complemental strand, 33330117 - 33329994
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||||||  || | || ||| ||||||    
T  33330117 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgcttccagcaaacttggctcac 33330018  T
Q  205 ggcacctccaatcgtgtcacgatt 228  Q
    |||| |||| ||||||||||||||    
T  33330017 ggcatctccgatcgtgtcacgatt 33329994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 228
Target Start/End: Complemental strand, 33335614 - 33335491
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||||||  || | || ||| ||||||    
T  33335614 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgcttccagcaaacttggctcac 33335515  T
Q  205 ggcacctccaatcgtgtcacgatt 228  Q
    |||| |||| ||||||||||||||    
T  33335514 ggcatctccgatcgtgtcacgatt 33335491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 34164730 - 34164667
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttg 87  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34164730 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgatttg 34164667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 22709426 - 22709545
Alignment:
Q  73 tcgtgtcacgatttgc--gtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    |||||||||||||||   || |||| ||||| ||||||||||||||||| ||| ||||||||||||||||| |  |||||||||||||||||||  ||||    
T  22709426 tcgtgtcacgatttgtatgtacgtcacaaggtacgaccagtccttatcatggaaacttaacgagcaagtttgaaaatcgtgtcacgatttcccaagatcg 22709525  T
Q  171 tgccacgattttgcaccctg 190  Q
    || |||||||| ||||||||    
T  22709526 tgtcacgatttggcaccctg 22709545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 6005822 - 6005945
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||||||  || | || ||| |||||     
T  6005822 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgcttccagcaaacttggctcat 6005921  T
Q  205 ggcacctccaatcgtgtcacgatt 228  Q
    |||| |||| ||||||||||||||    
T  6005922 ggcatctccgatcgtgtcacgatt 6005945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 30125185 - 30125071
Alignment:
Q  122 gatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtg 220  Q
    |||||||||||||||||||||   ||||||||||||||||||| |||||||||||||||| ||  |||| || | ||||||||||||||||  |||||||    
T  30125185 gatacttaacgagcaagtttctgaatcgtgtcacgatttcccaaaatcgtgccacgatttggcgtcctgcaaac-tagctcacggcacctcgaaatcgtg 30125087  T
Q  221 tcacgattccaaaatc 236  Q
    ||||||| ||||||||    
T  30125086 tcacgatgccaaaatc 30125071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 190
Target Start/End: Original strand, 3073123 - 3073243
Alignment:
Q  72 atcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatc 169  Q
    ||||||| ||||||  ||| ||| |||||||| | ||||||||||||||| ||| |||||||||||||||||    ||||||||||||||||| ||||||    
T  3073123 atcgtgtaacgattagtgcatccatcccaaggtatgaccagtccttatcatggaaacttaacgagcaagtttgcaaatcgtgtcacgatttccaacaatc 3073222  T
Q  170 gtgccacgattttgcaccctg 190  Q
    ||| |||||||| ||||||||    
T  3073223 gtgtcacgatttggcaccctg 3073243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 22010405 - 22010297
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    |||||||||||||||||  | | ||||||| | ||| |||||||||||  |||||||||||||||||||||   |||||||||||||||||||  |||||    
T  22010405 atcgtgtcacgatttgcaacggacccaaggta-gacaagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgt 22010307  T
Q  172 gccacgattt 181  Q
    ||||||||||    
T  22010306 gccacgattt 22010297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 6136263 - 6136324
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||    
T  6136263 cttcaaatctgcacaagaa-acttaaatactagtcttcctctgttccaatcgtgtcacgattt 6136324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 236
Target Start/End: Original strand, 11857350 - 11857514
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||||||||  | | |||||||   ||| |||||||||||  | |||||||||||||||||||   |||||||||||||||||||  ||||    
T  11857350 aatcgtgtcacgatttgcaacggacccaaggtt-gacaagtccttatcagtgttacttaacgagcaagtttctaaatcgtgtcacgatttcccaagatcg 11857448  T
Q  171 tgccacgattttgcaccctgaaaccttagctcacgg-cacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||||||||| ||  |||| || | |||||||||| ||| |  |||||||||||||| ||||||||    
T  11857449 tgccacgatttggcgtcctgcaaac-tagctcacggccacttgaaatcgtgtcacgatgccaaaatc 11857514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 5343880 - 5343959
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgc 184  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  |||||| |||||||||||    
T  5343880 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgtcacgattttgc 5343959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 14737246 - 14737174
Alignment:
Q  109 agtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattt 181  Q
    |||||||||||  |||||||||||||||||||||   ||||||||||||||| |||  |||||||||||||||    
T  14737246 agtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgattttccaagatcgtgccacgattt 14737174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 14742106 - 14742034
Alignment:
Q  109 agtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattt 181  Q
    |||||||||||  |||||||||||||||||||||   ||||||||||||||| |||  |||||||||||||||    
T  14742106 agtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgattttccaagatcgtgccacgattt 14742034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 5757116 - 5757051
Alignment:
Q  125 acttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg 190  Q
    ||||||| ||||||||| |  |||||||||||||||| || |||||| |||||||||  |||||||    
T  5757116 acttaaccagcaagtttgaaaatcgtgtcacgatttcacaaaatcgtaccacgatttgacaccctg 5757051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 23896792 - 23896857
Alignment:
Q  125 acttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg 190  Q
    ||||||| ||||||||| |  |||||||||||||||| || |||||| |||||||||  |||||||    
T  23896792 acttaaccagcaagtttaaaaatcgtgtcacgatttcacaaaatcgtaccacgatttgacaccctg 23896857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 26253789 - 26253698
Alignment:
Q  71 aatcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 160  Q
    |||||||||||||||  | ||| |||| ||| | ||||||||||||||||  | | ||||||| ||||||||| |  |||||||||||||||    
T  26253789 aatcgtgtcacgattgatacgtacgtcacaaagtacgaccagtccttatcctgaaaacttaaccagcaagtttgaaaatcgtgtcacgattt 26253698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 69 - 236
Target Start/End: Complemental strand, 7122487 - 7122320
Alignment:
Q  69 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  7122487 ccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgatttcccacaat 7122388  T
Q  169 cgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||||||||| |||||| ||||| |||| |||||||||||| |   |||||||||||||| ||||||||    
T  7122387 cgtgccacga-tttgcacccctgcaaccctagctcacggcatccgaaatcgtgtcacgatcccaaaatc 7122320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 68 - 236
Target Start/End: Complemental strand, 5135871 - 5135702
Alignment:
Q  68 tccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacga-tttcccaca 166  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| |    
T  5135871 tccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccggtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattttcccaaa 5135772  T
Q  167 atcgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||||| ||||| |||||| ||||| |||| || ||||||||| |   ||||| |||||||| ||||||||    
T  5135771 atcgtgacacga-tttgcacccctgcaaccctaactcacggcatccgaaatcgcgtcacgataccaaaatc 5135702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 68 - 236
Target Start/End: Complemental strand, 5138097 - 5137928
Alignment:
Q  68 tccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacga-tttcccaca 166  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| |    
T  5138097 tccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccggtccttatcaaggatacttaacgagcaagtttcttgatcgtgtcacgattttcccaaa 5137998  T
Q  167 atcgtgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||||| ||||| |||||| ||||| |||| || ||||||||| |   ||||| |||||||| ||||||||    
T  5137997 atcgtgacacga-tttgcacccctgcaaccctaactcacggcatccgaaatcgcgtcacgataccaaaatc 5137928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 97 - 236
Target Start/End: Complemental strand, 7124681 - 7124542
Alignment:
Q  97 caaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgca-ccctgaaacc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  7124681 caaggaacgaccagtccttatcaaggatacttaacgagcaagtttctggatcgtgtcacgatttcccacaatcgtgccacga-tttgcacccctgcaacc 7124583  T
Q  196 ttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
     |||||||||||| |   |||||||||||||| ||||||||    
T  7124582 ctagctcacggcatccgaaatcgtgtcacgatcccaaaatc 7124542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 29760995 - 29761197
Alignment:
Q  27 caaatctgcacaataacact-taagtactagtcttcctctgttccaatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggata 125  Q
    ||||||||||||| |||||  ||  ||||||||||||||||    ||||||| |||||||||||||||| |||||| | |||||||||||||||||||||    
T  29760995 caaatctgcacaagaacacaatatatactagtcttcctctgaagaaatcgtgccacgatttgcgtccgtaccaaggtatgaccagtccttatcaaggata 29761094  T
Q  126 cttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcac 224  Q
    |||||||||||||||||   |||||||||||||||||||  ||||||||||||||| ||  |||| || | ||||||||||||||||  |||||||||||    
T  29761095 cttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgatttggcgtcctgcaaac-tagctcacggcacctcgaaatcgtgtcac 29761193  T
Q  225 gatt 228  Q
    ||||    
T  29761194 gatt 29761197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 72 - 236
Target Start/End: Original strand, 24742360 - 24742524
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    |||||| |||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||  |||||    
T  24742360 atcgtggcacgatttgcgtccgttcccaggtatgaccagtccttatcaaggatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgt 24742459  T
Q  172 gccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    |||||||||| ||  |||| || | ||||||||||||||||  |||||||||||||| ||||||||    
T  24742460 gccacgatttggcgtcctgcaaac-tagctcacggcacctcgaaatcgtgtcacgatgccaaaatc 24742524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 18856125 - 18856256
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||| ||||||||||||||| || | || ||| ||||||    
T  18856125 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcttgccacgattttgcatccagcaaacttggctcac 18856224  T
Q  205 ggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||||||||||||||||||||||||||||||    
T  18856225 ggcacctccaatcgtgtcacgattccaaaatc 18856256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 236
Target Start/End: Complemental strand, 8393200 - 8393035
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    |||||||||||||| ||||| |  |||||| || ||||||||||||||| ||||||||||||||||||||||  |||||||||||||||| ||  |||||    
T  8393200 aatcgtgtcacgatctgcgtaccacccaagaaaagaccagtccttatcacggatacttaacgagcaagtttctggatcgtgtcacgattttcccaaatcg 8393101  T
Q  171 tgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||||||| |||||| ||||| |||| |||||||||||| |   |||||||||||||| ||||||||    
T  8393100 tgccacga-tttgcacccctgcaaccctagctcacggcatccgaaatcgtgtcacgataccaaaatc 8393035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 45347501 - 45347370
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||||||| || | || ||| ||||||    
T  45347501 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgcatccagcaaacttggctcac 45347402  T
Q  205 ggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||| ||| |||||||||||||||||||||||    
T  45347401 ggcatctctaatcgtgtcacgattccaaaatc 45347370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 71 - 236
Target Start/End: Complemental strand, 8395409 - 8395244
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    |||||||||||||| ||||| |  |||||| |||||||||||||||||| ||||||||||||||||||||||  ||| |||||||||||| ||  |||||    
T  8395409 aatcgtgtcacgatctgcgtaccacccaagaaacgaccagtccttatcacggatacttaacgagcaagtttctggattgtgtcacgattttcccaaatcg 8395310  T
Q  171 tgccacgattttgca-ccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||| |||| |||||| ||||| |||| |||||||||||| |   |||||||||||||| ||||||||    
T  8395309 tgctacga-tttgcacccctgcaaccctagctcacggcatccgaaatcgtgtcacgataccaaaatc 8395244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 75 - 233
Target Start/End: Original strand, 31495685 - 31495845
Alignment:
Q  75 gtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtg 172  Q
    |||||||||||  ||||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||    |||||||||||||||||||||||||||    
T  31495685 gtgtcacgattggtgcgttcgtcccaagaaacgaccagtccttatcatggaaacttaacgagcaagtttgcaaatcgtgtcacgatttcccacaatcgtg 31495784  T
Q  173 ccacgattttgcaccctg-aaaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
     |||||||| |||||||| |||||  ||||||||||| | |  |||||||||||||| |||||    
T  31495785 tcacgatttggcaccctgcaaacc--agctcacggcatcacgaaatcgtgtcacgatgccaaa 31495845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 72 - 236
Target Start/End: Complemental strand, 56141728 - 56141564
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||||||| || | ||||||| | ||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||  |||||    
T  56141728 atcgtgtcacgatttgcatctgacccaaggta-gaccagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgt 56141630  T
Q  172 gccacgatttt-gcaccctgaaaccttagctcacggcacctcc-aatcgtgtcacgattccaaaatc 236  Q
    ||||||||||| ||  |||| || | ||||||||| | ||||| |||||||||||||| ||||||||    
T  56141629 gccacgattttggcgtcctgcaaac-tagctcacgacccctccaaatcgtgtcacgatgccaaaatc 56141564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 236
Target Start/End: Original strand, 51520833 - 51520997
Alignment:
Q  71 aatcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||||||||||| | ||||||| | || |||||||||||| ||||||||||||||||||||||   ||||||||| |||||||||  ||||    
T  51520833 aatcgtgtcacgatttgcgtctgacccaaggta-gatcagtccttatcagggatacttaacgagcaagtttctgaatcgtgtcatgatttcccaagatcg 51520931  T
Q  171 tgccacgattttgcaccctgaaaccttagctcacggcacc-tccaatcgtgtcacgattccaaaatc 236  Q
    ||||||||||| ||  |||| || | ||||||||||| || |  |||||||||||||| ||||||||    
T  51520932 tgccacgatttggcgtcctgcaaac-tagctcacggccccttgaaatcgtgtcacgatgccaaaatc 51520997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 45356982 - 45356861
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||||||| || | || ||| ||||||    
T  45356982 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgcatccagcaaacttggctcac 45356883  T
Q  205 ggcacctccaatcgtgtcacga 226  Q
    |||| ||| |||||||||||||    
T  45356882 ggcatctcaaatcgtgtcacga 45356861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 5135943 - 5135872
Alignment:
Q  15 acctctctccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttg 87  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5135943 acctctctc-ttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgatttg 5135872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 5138169 - 5138098
Alignment:
Q  15 acctctctccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttg 87  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5138169 acctctctc-ttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgatttg 5138098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 7122552 - 7122490
Alignment:
Q  24 cttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7122552 cttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 7122490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 72 - 190
Target Start/End: Original strand, 13992659 - 13992779
Alignment:
Q  72 atcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatc 169  Q
    ||||||||||||||  | ||| |||| ||||| | ||||||||||||||| | | ||||||||||||||||| |  ||||||||||||||||||| ||||    
T  13992659 atcgtgtcacgattgatacgtacgtcacaaggtatgaccagtccttatcatgaaaacttaacgagcaagtttgaaaatcgtgtcacgatttcccaaaatc 13992758  T
Q  170 gtgccacgattttgcaccctg 190  Q
    ||| |||||||| ||||||||    
T  13992759 gtgtcacgatttggcaccctg 13992779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 28468196 - 28468077
Alignment:
Q  73 tcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    |||||||||||||||  ||| |||| ||||| |||||||||||||||||  || ||||||||||||||||| |  ||||||||||||||| |||  ||||    
T  28468196 tcgtgtcacgatttgtacgtacgtcacaaggtacgaccagtccttatcatagaaacttaacgagcaagtttgaaaatcgtgtcacgattttccaagatcg 28468097  T
Q  171 tgccacgattttgcaccctg 190  Q
    || |||||||| ||||||||    
T  28468096 tgtcacgatttggcaccctg 28468077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 72 - 236
Target Start/End: Complemental strand, 9224115 - 9223952
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||| |||  | | ||||||| | ||| |||||||||||  |||||||||||||||||||||   |||||||||||||||||||  |||||    
T  9224115 atcgtgtcacgatctgcaacggacccaaggta-gacaagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgt 9224017  T
Q  172 gccacgattttgcaccctgaaaccttagctcacgg-cacctccaatcgtgtcacgattccaaaatc 236  Q
    |||||||||| ||  |||| || | |||||||||| ||| |  |||||||||||||| ||||||||    
T  9224016 gccacgatttggcgtcctgcaaac-tagctcacggccacttgaaatcgtgtcacgatgccaaaatc 9223952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 109 - 236
Target Start/End: Complemental strand, 18712435 - 18712308
Alignment:
Q  109 agtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcacgg-c 207  Q
    |||||||||||  |||||||||||||||||||||   |||||||||||||||||||  ||||||||||||||| ||  |||| || | |||||||||| |    
T  18712435 agtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgatttggcgtcctgcaaac-tagctcacggcc 18712337  T
Q  208 acctccaatcgtgtcacgattccaaaatc 236  Q
    || |  |||||||||||||| ||||||||    
T  18712336 acttgaaatcgtgtcacgatgccaaaatc 18712308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 9228902 - 9228794
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||| |||  | | ||||||| | ||| |||||||||||  |||||||||||||||||||||   |||||||||||||||||||  |||||    
T  9228902 atcgtgtcacgatctgcaacggacccaaggta-gacaagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgt 9228804  T
Q  172 gccacgattt 181  Q
    ||||||||||    
T  9228803 gccacgattt 9228794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 18860403 - 18860468
Alignment:
Q  171 tgccacgattttgcaccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||||||||||||| || | || ||| ||||||||||||||||||||||||||||||||||||||    
T  18860403 tgccacgattttgcatccagcaaacttggctcacggcacctccaatcgtgtcacgattccaaaatc 18860468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 5733062 - 5733194
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  |||||| |||||||| ||  |||| || |||   ||||    
T  5733062 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgtcacgatttggcgtcctgcaaacttgcttcac 5733161  T
Q  205 ggcacctc-caatcgtgtcacgattccaaaatc 236  Q
    |||||| |  |||||||||||||| ||||||||    
T  5733162 ggcaccacgaaatcgtgtcacgatgccaaaatc 5733194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 3814422 - 3814497
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattt 181  Q
    |||||||||||||||  |||||||||| ||||||||||   ||||||||||||||||||| ||||||| ||||||||    
T  3814422 gaccagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttccca-aatcgtgacacgattt 3814497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 31985327 - 31985236
Alignment:
Q  71 aatcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgattt 160  Q
    |||||||||||||||  ||||| |||| ||||| ||||||||||||||||  | | ||||||| ||||||||| |  |||||||||||||||    
T  31985327 aatcgtgtcacgattgatgcgtacgtcacaaggtacgaccagtccttatcctgaaaacttaaccagcaagtttgaaaatcgtgtcacgattt 31985236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 31495610 - 31495677
Alignment:
Q  19 ctctccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||||||||||||||||||| ||||||||| || ||| | ||| ||| |  ||||||||||||||||    
T  31495610 ctctccttcaaatctgcacaagaacacttaaatattagccctccactgataaaatcgtgtcacgattt 31495677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 2893 - 3132
Alignment:
Q  17 ctctctccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaa--------------------tcgtgtcacgatttgcgtccgtcc 96  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||||    
T  2893 ctctctccttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattttcccaatcgtgtcacgatttgcgtccgtcc 2992  T
Q  97 caaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgca-ccctgaaacc 195  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  2993 caaggaacgaccagtccttatcaagaatacttaacgagcaagtttctggatcgtgtcacgatttcccacaatcgtgccacga-tttgcacccctgcaacc 3091  T
Q  196 ttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
     |||||||||||| |   |||||||||||||| ||||||||    
T  3092 ctagctcacggcatccgaaatcgtgtcacgatcccaaaatc 3132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 12647675 - 12647914
Alignment:
Q  17 ctctctccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaa--------------------tcgtgtcacgatttgcgtccgtcc 96  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||||    
T  12647675 ctctctccttcaaatctgcacaagaacacttaagtactagtcttcctctgttccaatcgtgtcacgattttcccaatcgtgtcacgatttgcgtccgtcc 12647774  T
Q  97 caaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgca-ccctgaaacc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||| |||||| ||||| ||||    
T  12647775 caaggaacgaccagtccttatcaaggatacttaacgagcaagtttatggatcgtgtcacgatttcccacaatcgtgccacga-tttgcacccctgcaacc 12647873  T
Q  196 ttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
     |||||||||||| |   |||||||||||||| ||||||||    
T  12647874 ctagctcacggcatccgaaatcgtgtcacgatcccaaaatc 12647914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 72 - 236
Target Start/End: Complemental strand, 9296079 - 9295915
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    |||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||  |||||    
T  9296079 atcgtgtcacgatttgcgtccgacccaaggtatgaccagtccttatcaaggatacttaatgagcaagtttctgaatcgtgtcacgatttcccaagatcgt 9295980  T
Q  172 gccacgattttgcaccctgaaaccttagctcacggcacc-tccaatcgtgtcacgattccaaaatc 236  Q
    |||||||||| ||| |||| || | |||||||||||||| |  |||||||||||||| ||||||||    
T  9295979 gccacgatttggcatcctgcaaac-tagctcacggcaccttgaaatcgtgtcacgatgccaaaatc 9295915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 236
Target Start/End: Original strand, 14291908 - 14292072
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||||||||| |  ||||||| | |||||||||||||||  | |||||||||||||||||||   |||||||||||||||||||  |||||    
T  14291908 atcgtgtcacgatttgcgtacaacccaaggtatgaccagtccttatcagtggtacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgt 14292007  T
Q  172 gccacgattttgcaccctgaaaccttagctcacggcacctcca-atcgtgtcacgattccaaaatc 236  Q
    |||||||||| ||  |||| || | |||||||||||||||| | ||||||||||||| ||||||||    
T  14292008 gccacgatttggcgtcctgcaaac-tagctcacggcacctcgagatcgtgtcacgatgccaaaatc 14292072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 72 - 236
Target Start/End: Complemental strand, 11098604 - 11098440
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||||||||| |  |||||||   |||||||||||||||  |||||||||||||||||||||   |||||||||||||||||||  |||||    
T  11098604 atcgtgtcacgatttgcgtacaacccaaggtttgaccagtccttatcagtgatacttaacgagcaagtttctaaatcgtgtcacgatttcccaagatcgt 11098505  T
Q  172 gccacgattttgcaccctgaaaccttagctcacggcacc-tccaatcgtgtcacgattccaaaatc 236  Q
    |||||||||| ||  |||| || | |||||||||||||| |  ||||||||||| || ||||||||    
T  11098504 gccacgatttggcgtcctgcaaac-tagctcacggcaccttgaaatcgtgtcactatgccaaaatc 11098440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 6266493 - 6266374
Alignment:
Q  73 tcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    |||||||||||||  ||||| ||||||||| |||||||| ||||||||| ||| |||||||||| ||||||    |||||||||||||||||||||||||    
T  6266493 tcgtgtcacgattggtgcgttcgtcccaagaaacgaccattccttatcatggaaacttaacgagtaagtttgcaaatcgtgtcacgatttcccacaatcg 6266394  T
Q  171 tgccacgattttgcaccctg 190  Q
    || |||||||| ||||||||    
T  6266393 tgtcacgatttggcaccctg 6266374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 190
Target Start/End: Original strand, 25410047 - 25410166
Alignment:
Q  73 tcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||| |  ||| |||| ||||| ||||||| ||||||||||||||||||||||||||||||| |  |||||||||||||||||||  ||||    
T  25410047 tcgtgtcacgattggtacgtacgtcacaaggtacgaccattccttatcaaggatacttaacgagcaagtttgaaaatcgtgtcacgatttcccaagatcg 25410146  T
Q  171 tgccacgattttgcaccctg 190  Q
    || |||||||| ||||||||    
T  25410147 tgtcacgatttggcaccctg 25410166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 19349683 - 19349806
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| | ||||||||   |||||||||||||||||||  ||||||||||||||||||  || | || ||| ||||||    
T  19349683 gaccagtccttatcagagatacttaaccaacaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgcttccagcaaacttggctcac 19349782  T
Q  205 ggcacctccaatcgtgtcacgatt 228  Q
    |||| |||| ||||||||||||||    
T  19349783 ggcatctccgatcgtgtcacgatt 19349806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 233
Target Start/End: Original strand, 3492158 - 3492320
Alignment:
Q  73 tcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||| |  ||| |||| ||||| |||||| |||||||||  ||| |||||||||||||||||||  |||||||||||||||||||  ||||    
T  3492158 tcgtgtcacgattggtacgtacgtcacaaggtacgacctgtccttatcctggaaacttaacgagcaagtttcagaatcgtgtcacgatttcccaagatcg 3492257  T
Q  171 tgccacgattttgcaccctg-aaaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
    || |||||||| |||||||| |||||  ||||||||||| | |  |||||||||||||| |||||    
T  3492258 tgtcacgatttggcaccctgcaaacc--agctcacggcatcacaaaatcgtgtcacgatgccaaa 3492320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 19344825 - 19344948
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||||||||| ||||||||  || | || ||| ||||||    
T  19344825 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccatgattttgcttccagcaaacttggctcac 19344924  T
Q  205 ggcacctccaatcgtgtcacgatt 228  Q
    |||| |||| ||||| ||||||||    
T  19344925 ggcatctccgatcgtatcacgatt 19344948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 30833140 - 30833021
Alignment:
Q  73 tcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||| |  ||| |||| ||||| |||||| |||||||||  ||| ||||||||||||||||| |  |||||||||||||||||||  ||||    
T  30833140 tcgtgtcacgattggtacgtacgtcacaaggtacgacctgtccttatcctggaaacttaacgagcaagtttgaaaatcgtgtcacgatttcccaagatcg 30833041  T
Q  171 tgccacgattttgcaccctg 190  Q
    || |||||||| ||||||||    
T  30833040 tgtcacgatttggcaccctg 30833021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 233
Target Start/End: Complemental strand, 32289367 - 32289205
Alignment:
Q  73 tcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcg 170  Q
    ||||||||||||| |  ||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||    |||||||||||||| | ||  ||||    
T  32289367 tcgtgtcacgattggagcgtacgtcccaaggtacgaccagtccttatcatggaaacttaacgagcaagttttcaaatcgtgtcacgattcctcaagatcg 32289268  T
Q  171 tgccacgattttgcaccctg-aaaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
    || || ||||| |||||||| |||||  ||||||||||| | |  |||||||||||||| |||||    
T  32289267 tgtcaagatttggcaccctgcaaacc--agctcacggcatcacaaaatcgtgtcacgatgccaaa 32289205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 233
Target Start/End: Original strand, 4484703 - 4484866
Alignment:
Q  72 atcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatc 169  Q
    |||||||||||||| |  ||| |||||||||| |||||||||||||||||  || |||||||||||||||||    |||||||||||||| |  |  |||    
T  4484703 atcgtgtcacgattggtacgtacgtcccaaggtacgaccagtccttatcatagaaacttaacgagcaagtttgcaaatcgtgtcacgattccttaagatc 4484802  T
Q  170 gtgccacgattttgcaccctgaaaccttagctcacggca-cctccaatcgtgtcacgattccaaa 233  Q
    ||| |||||||| |||||||| || | |||||||||||| | |  |||||||||||||| |||||    
T  4484803 gtgtcacgatttggcaccctgcaaac-tagctcacggcatcatgaaatcgtgtcacgatgccaaa 4484866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 32247229 - 32247299
Alignment:
Q  166 aatcgtgccacgattttgcaccctgaaaccttagctcacggcacctccaatcgtgtcacgattccaaaatc 236  Q
    |||||||||||||||||||| || | || ||| |||||||||| ||| |||||||||||||||||||||||    
T  32247229 aatcgtgccacgattttgcatccagcaaacttggctcacggcatctcaaatcgtgtcacgattccaaaatc 32247299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 39811693 - 39811585
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||| |||  | | ||||||| | ||| |||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  |||||    
T  39811693 atcgtgtcacgatctgcaacggccccaaggca-gacaagtccttatcagtgatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgt 39811595  T
Q  172 gccacgattt 181  Q
    ||||||||||    
T  39811594 gccacgattt 39811585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 30833209 - 30833146
Alignment:
Q  23 ccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||||||||||||||| ||||||||| |||||||||||| ||| |  ||||||||||||||||    
T  30833209 ccttcaaatctgcacaagaacacttaaatactagtcttccactgataaaatcgtgtcacgattt 30833146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 4484631 - 4484698
Alignment:
Q  19 ctctccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    ||||| ||||||||||||||| ||||||||| |||||| ||||| ||| |  ||||||||||||||||    
T  4484631 ctctctttcaaatctgcacaagaacacttaaatactagccttccactgataaaatcgtgtcacgattt 4484698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 190
Target Start/End: Complemental strand, 28258870 - 28258750
Alignment:
Q  71 aatcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    ||||||| |||||||  ||||| || ||||||| |||||||  |||||||  | | ||||||| ||||||||| |  |||||||||||||||| || |||    
T  28258870 aatcgtgccacgattgatgcgtacgacccaaggtacgaccaa-ccttatcctgaaaacttaaccagcaagtttgaaaatcgtgtcacgatttcacaaaat 28258772  T
Q  169 cgtgccacgattttgcaccctg 190  Q
     ||||||||||||  |||||||    
T  28258771 tgtgccacgatttgacaccctg 28258750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 190
Target Start/End: Original strand, 40739236 - 40739357
Alignment:
Q  71 aatcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaat 168  Q
    |||||||||||||||  | ||| |||| ||||| |||||| |||||||||  | | ||||||||||||||||| |  || ||||||| ||| | ||  ||    
T  40739236 aatcgtgtcacgattgatacgtacgtcacaaggtacgacctgtccttatcctgaaaacttaacgagcaagtttgaaaattgtgtcacaattccacaagat 40739335  T
Q  169 cgtgccacgattttgcaccctg 190  Q
    |||| |||||||| ||||||||    
T  40739336 cgtgtcacgatttggcaccctg 40739357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 6266566 - 6266529
Alignment:
Q  19 ctctccttcaaatctgcacaataacacttaagtactag 56  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  6266566 ctctccttcaaatctgcacaagaacacttaaatactag 6266529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 22208 - 21996
Alignment:
Q  23 ccttcaaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtccttatcaa 120  Q
    ||||||||||||||||| ||||||||| |||||| ||||| ||| |  ||||||||||||||| |  ||| |||| ||||| |||||| ||||||||||     
T  22208 ccttcaaatctgcacaagaacacttaaatactagccttccactgataaaatcgtgtcacgattggtacgtacgtcacaaggtacgacctgtccttatcag 22109  T
Q  121 ggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcacggcacctc-caatcgt 219  Q
     |||||||||||||||||||| || |||||||||||||||||||  |||||| |||||||| ||  |||| || | ||||||||||||||||  ||||||    
T  22108 tgatacttaacgagcaagttttacaatcgtgtcacgatttcccaagatcgtgtcacgatttggcgtcctgcaaac-tagctcacggcacctcgaaatcgt 22010  T
Q  220 gtcacgattccaaa 233  Q
    |||||||| |||||    
T  22009 gtcacgatgccaaa 21996  T

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Target: scaffold0464 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 761 - 892
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctgaaaccttagctcac 204  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||||||| || | || ||| ||||||    
T  761 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgcatccagcaaacttggctcac 860  T
Q  205 ggcacctccaatcgtgtcacgattccaaaatc 236  Q
    ||||||||||||||||||||||||||||||||    
T  861 ggcacctccaatcgtgtcacgattccaaaatc 892  T

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Target: scaffold0188 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 17705 - 17488
Alignment:
Q  19 ctctccttcaaa-tctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatttg--cgtccgtcccaaggaacgaccagtcctt 115  Q
    |||||||||||| ||||||||| ||||||||| |||||| ||||| ||| |  ||||||||||||||| |  ||| |||| ||||| ||||||| |||||    
T  17705 ctctccttcaaaatctgcacaagaacacttaaatactagccttccactgataaaatcgtgtcacgattggaacgtacgtcacaaggtacgaccaatcctt 17606  T
Q  116 atcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg-aaaccttagctcacggcacctc-c 213  Q
    |||||||||||||||||||||||||| |  ||| |||||||||||||||  |||||| |||||||| |||||||| |||||  ||||||||||| | |      
T  17605 atcaaggatacttaacgagcaagtttgaaaatcatgtcacgatttcccaagatcgtgtcacgatttggcaccctgcaaacc--agctcacggcatcacga 17508  T
Q  214 aatcgtgtcacgattccaaa 233  Q
    |||||||||||||| |||||    
T  17507 aatcgtgtcacgatgccaaa 17488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 233
Target Start/End: Original strand, 9045 - 9251
Alignment:
Q  28 aaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggata 125  Q
    |||||||||||| ||||||||| |||||| ||||| ||| |  |||||||||||||||  ||||| |||||||||| ||||||||||||||||| ||| |    
T  9045 aaatctgcacaagaacacttaaatactagccttccactgataaaatcgtgtcacgattggtgcgtacgtcccaaggtacgaccagtccttatcatggaaa 9144  T
Q  126 cttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg-aaaccttagctcacggcacctc-caatcgtgtca 223  Q
    ||||||||||||||||    ||||||||||||||||||| |||| || |||||||| |||||||| |||||  ||||||||||| | |  ||||||||||    
T  9145 cttaacgagcaagtttgcaaatcgtgtcacgatttccca-aatcatgtcacgatttggcaccctgcaaacc--agctcacggcatcacgaaatcgtgtca 9241  T
Q  224 cgattccaaa 233  Q
    |||| |||||    
T  9242 cgatgccaaa 9251  T

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Target: scaffold0491; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 233
Target Start/End: Original strand, 11534 - 11696
Alignment:
Q  72 atcgtgtcacgatt--tgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatc 169  Q
    ||||||||||||||  ||||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||    ||||||||||||||||||| ||||    
T  11534 atcgtgtcacgattggtgcgtacgtcccaaggtacgaccagtccttatcatggaaacttaacgagcaagtttgcaaatcgtgtcacgatttccca-aatc 11632  T
Q  170 gtgccacgattttgcaccctg-aaaccttagctcacggca-cctccaatcgtgtcacgattccaaa 233  Q
    ||| |||||||| |||||||| |||||  ||||||||||| | |  |||||||||||||| |||||    
T  11633 gtgtcacgatttggcaccctgcaaacc--agctcacggcatcatgaaatcgtgtcacgatgccaaa 11696  T

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Target: scaffold0197 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 72 - 228
Target Start/End: Complemental strand, 18880 - 18725
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    |||||||||||||||||  | ||||| ||||  |||||||| ||||||  |||||||||| ||||||||||   |||||||||||||||||||  |||||    
T  18880 atcgtgtcacgatttgcaacggtccccaggat-gaccagtctttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgt 18782  T
Q  172 gccacgattttgcaccctgaaaccttagctcacggcacctccaatcgtgtcacgatt 228  Q
    | |||||||||||  || | || |||||||||| ||  |||| ||||||||||||||    
T  18781 ggcacgattttgcttccagcaaacttagctcactgcctctccgatcgtgtcacgatt 18725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 13968 - 13889
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgc 184  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||||||    
T  13968 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgc 13889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 176634 - 176555
Alignment:
Q  105 gaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgc 184  Q
    |||||||||||||||  |||||||||| ||||||||||   |||||||||||||||||||  ||||||||||||||||||    
T  176634 gaccagtccttatcagagatacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattttgc 176555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 181
Target Start/End: Complemental strand, 34770 - 34662
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||| |||  | | ||||||| | ||| |||||||||||  |||||||||||||||||||||   |||||||||||||||||||  |||||    
T  34770 atcgtgtcacgatctgcaacggacccaaggta-gacaagtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgt 34672  T
Q  172 gccacgattt 181  Q
    ||||||||||    
T  34671 gccacgattt 34662  T

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Target: scaffold0355 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 3517 - 3445
Alignment:
Q  109 agtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattt 181  Q
    |||||||||||  |||||||||||||||||||||   |||||||||||||||||||  |||||||||||||||    
T  3517 agtccttatcattgatacttaacgagcaagtttctgaatcgtgtcacgatttcccaagatcgtgccacgattt 3445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 184
Target Start/End: Complemental strand, 1955 - 1844
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||| |||  | |||||||||   |||||||||||||||  || ||||||| ||||||||||   |||||||||||||||||||  |||||    
T  1955 atcgtgtcacgatctgcaacggtcccaaggtt-gaccagtccttatcagagaaacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgt 1857  T
Q  172 gccacgattttgc 184  Q
    |||||||||||||    
T  1856 gccacgattttgc 1844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 184
Target Start/End: Complemental strand, 148660 - 148549
Alignment:
Q  72 atcgtgtcacgatttgcgtccgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgt 171  Q
    ||||||||||||| |||  | |||||||||   |||||||||||||||  || ||||||| ||||||||||   |||||||||||||||||||  |||||    
T  148660 atcgtgtcacgatctgcaacggtcccaaggtt-gaccagtccttatcagagaaacttaaccagcaagtttctgaatcgtgtcacgatttcccaagatcgt 148562  T
Q  172 gccacgattttgc 184  Q
    |||||||||||||    
T  148561 gccacgattttgc 148549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 8112 - 8184
Alignment:
Q  109 agtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattt 181  Q
    |||||||||||  |||||||||||||||||||||   ||||||||||||||| |||  |||||||||||||||    
T  8112 agtccttatcagtgatacttaacgagcaagtttctgaatcgtgtcacgattttccaagatcgtgccacgattt 8184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 233
Target Start/End: Complemental strand, 680 - 539
Alignment:
Q  92 cgtcccaaggaacgaccagtccttatcaaggatacttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctga 191  Q
    |||| ||||| ||||||||||| ||||  ||| ||||||||||||| ||| |  |||||||||||||| | ||  |||||| |||||||| ||||||||     
T  680 cgtcacaaggtacgaccagtccctatcctggaaacttaacgagcaaatttgaaaatcgtgtcacgattcctcaagatcgtgtcacgatttggcaccctgc 581  T
Q  192 aaccttagctcacggcacctc-caatcgtgtcacgattccaaa 233  Q
    || | |||||||||||| | |  |||||||||||||| |||||    
T  580 aaac-tagctcacggcatcacgaaatcgtgtcacgatgccaaa 539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 765 - 707
Alignment:
Q  28 aaatctgcacaataacacttaagtactagtcttcctctgttccaatcgtgtcacgattt 86  Q
    |||||||||||| ||||||||| |||||||||||| ||| |  ||||||||||||||||    
T  765 aaatctgcacaagaacacttaaatactagtcttccactgataaaatcgtgtcacgattt 707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 1248 - 1183
Alignment:
Q  125 acttaacgagcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg 190  Q
    ||||||| ||||||||| |  |||||||||||||||| || |||||| |||||||||  |||||||    
T  1248 acttaaccagcaagtttaaaaatcgtgtcacgatttcacaaaatcgtaccacgatttgacaccctg 1183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 45666 - 45723
Alignment:
Q  133 agcaagtttcacgatcgtgtcacgatttcccacaatcgtgccacgattttgcaccctg 190  Q
    ||||||||| |  |||||||||||||||| || ||||||||||||||||  |||||||    
T  45666 agcaagtttgaaaatcgtgtcacgatttcacagaatcgtgccacgatttgacaccctg 45723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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