View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_high_8 (Length: 576)
Name: NF16521_high_8
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 18 - 573
Target Start/End: Original strand, 37338367 - 37338922
Alignment:
| Q |
18 |
tgttcaaagtagggatacattgaattttaatggaaataggagatacttgaagaagaaagagataaaatcaaaccataaaaattggaatggtcagaacagc |
117 |
Q |
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| T |
37338367 |
tgttcaaagtagggatacattgaatttgaatggaaataggagatacttgaagaagaaagagataaaatcaaaccataaaaattggaatggtcagaacagc |
37338466 |
T |
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| Q |
118 |
accgttcttaggcaaaccagcaaaggtaaatcatcttcaaaagttgacaccaataagtcaacacaaacctgttcttcagaaagttcgaccggagctagga |
217 |
Q |
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| T |
37338467 |
accgttcttaggcaaaccagcaaaggtaaatcatcttcaaaagttgacaccaataagtcaacacaaacctgttcttcagaaagttcgaccggagctagga |
37338566 |
T |
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| Q |
218 |
cgacgacaaacaaatgtgctgtaaattcttactatgaatccaaaaagtccagaacaagagtaactgataagccaaaggagctttcagtatccaaaagaaa |
317 |
Q |
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| T |
37338567 |
cgacgacaaacaaatgtgctgtaaattcttactatgaatccaaaaagtccagaacaagagtaactgataagcaaaaggagctttcagtatccaaaagaaa |
37338666 |
T |
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| Q |
318 |
gagttcttccgaaaagaagaggtgtgatcagaatgatgcacgaggttctgataatgtagttaatactcatgatagaaagtctataaaatgtaatgttaca |
417 |
Q |
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| T |
37338667 |
gagttcttccgaaaagaagaggtgtgatcagaatgatgcacgaggttctgataatgtagttaatactcatgatagaaagtctataaaatgtaatgttaca |
37338766 |
T |
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| Q |
418 |
atggatgaaagtatttacaatgatgcatatagcatgacagaaagcagggatgtcatttcatttacatttaaatctccattgaggaaaaatgcatctcagt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37338767 |
atggatgaaagtatttacaatgatgcatatagcatgacagaaagcagggatgtcatttcatttacatttaaatctccattgaggaaaaatgcatctcagt |
37338866 |
T |
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| Q |
518 |
cgcagtcgactacttagcaagtgatggaaacaaggaccagaattgatgtcgattct |
573 |
Q |
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| T |
37338867 |
cgcagtcgactactaagcaagtgatggaaacaaggaccagaattgatgtcgattct |
37338922 |
T |
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