View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_high_80 (Length: 230)
Name: NF16521_high_80
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_high_80 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 28799063 - 28798859
Alignment:
| Q |
16 |
aaaagcagctgcagcttttacaagcacaccaaagagaatgaaaggagtagagaagaaaggactatgatcactattttctagttcatacacattcaatggt |
115 |
Q |
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| T |
28799063 |
aaaagcagctgcagcttttacaagcacaccaaagagaatgaaaggagtagagaagaaaggactatgatcactattttctagttcatacacattcaatggt |
28798964 |
T |
|
| Q |
116 |
ggccacctcttgatcatggcttcttgttgttctggcttcactactttgtcatgttttgtccttatgtacacccggggtactttctctgcttcatcacttc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
28798963 |
ggccacctcttgatcatggcttcttgttgttctggcttcaccactttgtcatgttttgtccttatgtacacgcggggtactttctctgcttcattacttt |
28798864 |
T |
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| Q |
216 |
ctttg |
220 |
Q |
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||||| |
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| T |
28798863 |
ctttg |
28798859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 201
Target Start/End: Original strand, 42821800 - 42821973
Alignment:
| Q |
25 |
tgcagcttttacaagcacaccaaagagaatgaaaggagtagagaagaaaggactatgatcactattttctagttcatacacattcaatggtggccacctc |
124 |
Q |
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||||||||| ||||||| ||||||||| || || || ||||||||||| |||||||| ||||| | | | |||||||||| | |||||||||||| |
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| T |
42821800 |
tgcagctttaacaagcaaaccaaagagtataaatggggtagagaagaagggactatggtcactgt---ccaattcatacacactacctggtggccaccta |
42821896 |
T |
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| Q |
125 |
ttgatcatggcttcttgttgttctggcttcactactttgtcatgttttgtccttatgtacacccggggtactttctc |
201 |
Q |
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|| ||||||||||| ||||| | ||| || ||||| ||||| ||| ||||| |||||||||| ||||| || ||||| |
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| T |
42821897 |
tttatcatggcttcctgttgctttggttttactacattgtcttgtcttgtctttatgtacacacggggcaccttctc |
42821973 |
T |
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