View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_high_88 (Length: 214)
Name: NF16521_high_88
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_high_88 |
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Alignment Details
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 21242332 - 21242431
Alignment:
| Q |
18 |
tgaaccttgctttctatataaatgcctgcactaagtgaataagaataaatggtcacttgtctaaatcc----tttaagagactacaatccattgattatg |
113 |
Q |
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| T |
21242332 |
tgaaacttgctttctatataaatgcctgcactaagtgaataagaataaatggtcacttgtctaactcctttgtttaagagactacaatccattgattatg |
21242431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 21286153 - 21286089
Alignment:
| Q |
134 |
ggagagctcataccagctctctgaatatcaggctgaagtacaagtgttagtgtttgttctagaat |
198 |
Q |
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| T |
21286153 |
ggagagctcataccagctctctgaatatcaggctgaagtacaagtgtaagtgtttgttctagaat |
21286089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 21242786 - 21242828
Alignment:
| Q |
134 |
ggagagctcataccagctctctgaatatcaggctgaagtacaa |
176 |
Q |
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| T |
21242786 |
ggagagctcataccagctctctgaatatcaggctgaagtacaa |
21242828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 21156686 - 21156616
Alignment:
| Q |
18 |
tgaaccttgctttctatataaatgcctgcactaagtgaataagaataaatggtcacttgtctaaatccttt |
88 |
Q |
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| T |
21156686 |
tgaacgttgctttctctataaatgcatgcattatgcgaataagaataaacagccatttgtctaaatccttt |
21156616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 134 - 201
Target Start/End: Original strand, 4060877 - 4060944
Alignment:
| Q |
134 |
ggagagctcataccagctctctgaatatcaggctgaagtacaagtgttagtgtttgttctagaataat |
201 |
Q |
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| T |
4060877 |
ggagagctcaaaccagctctctgaatatcgggctgaagtacaactgtaagtgtttgttctagaataat |
4060944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 4066056 - 4066116
Alignment:
| Q |
140 |
ctcataccagctctctgaatatcaggctgaagtacaagtgttagtgtttgttctagaataa |
200 |
Q |
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| T |
4066056 |
ctcataccggctctctgaacattaggctgaagtacaactgtaagtgtttgttctagaataa |
4066116 |
T |
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