View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16521_low_1 (Length: 993)
Name: NF16521_low_1
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_1 |
 | |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 862; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 862; E-Value: 0
Query Start/End: Original strand, 13 - 993
Target Start/End: Complemental strand, 42474854 - 42473883
Alignment:
| Q |
13 |
catcatggaataatttgcacgtagctaagaaaagactaagaaaatctaggaaaaaattgaacatgtatatataaaatcacaagtaaagcatagaccagta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42474854 |
catcatggaataatttgcacgtagctaagaaaagactaagaaaatctaggaaaaaattgaacatgtatatataaaatcacaagtaaagcatagaccagta |
42474755 |
T |
|
| Q |
113 |
gctccgtaaatgtttacagcctacaaaagcatgtatccgataatgctcaaaagcttcaatgacaaaaagaaatgatgtacaaaaatgctccataagtgca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42474754 |
gctccgtaaatgtttacagcctacaaaagcatgtatccgataatgctcaaaagcttcaatgacaaaaagaaatgatgtacaaaaatgctccataagtgca |
42474655 |
T |
|
| Q |
213 |
tcatggactaacttgtatgtagtctaaagcttcaatgacataaaagaaatgctctacacaaaactgattatataaatgctaacttgctctgctaannnnn |
312 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
42474654 |
tcatggaataacttgtatgtagtctaaagcttcaatgacataaa-gaaatgctctacacaaaactgattatataaatgcttacttgctctgctaattttt |
42474556 |
T |
|
| Q |
313 |
nnnacgtccaaccagcaaagtcttttggtggttcaatccataagttctcaaaagcatttggttctaccaagtcaagacactgtttagtgggataatatct |
412 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| || |||||||||||||| |
|
|
| T |
42474555 |
tttacg---------caaagtcttttggtggttcaatccataagttctcaaaagcatttggttctaccaggtcacgacactgcttggtgggataatatct |
42474465 |
T |
|
| Q |
413 |
gtggtcatcgagagagaatgatatgcaacgctttccatagaaacggactttagggaagtagactatgtttctcattattccagtgacgtaagtcctagaa |
512 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
42474464 |
atggtcatcaagagagaatgatatgcaacgctttccatagaaacggactttagggaagtagactctgtttctcattattccagtgacgtaagtcctagaa |
42474365 |
T |
|
| Q |
513 |
tgagatgacaaaaaaccagcaaaatgtgtcactccatctagtgttctcacttctttccattccattagtgtcagatctaacttgaaaattattgggtcct |
612 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42474364 |
tgagatgacaaaaaaccagcaaaaagtgtcactccatctagtgttctcacttctttccattccattagtgtcagatctaacttgaaaattattgggtcct |
42474265 |
T |
|
| Q |
613 |
caccacaacatatatgaaccacaaatatatttcctttgtgctctatcataaatttctctttcgaccagtttttggaagtagaactttctactaggcattt |
712 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42474264 |
caccacaacatatatgaaccacaaatatatttcctttgtgctctatcataaatttctctttcgaccagtttttggaagtagaactttctactaggcattt |
42474165 |
T |
|
| Q |
713 |
gggcggaggtacttcgagaacactccaagtgcaatcaagtgggtcaaacacccctagccaacctgtgtggctaagacaataaaataatccgttcgaaatg |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42474164 |
gggcggaggtacttcgagaacactccaagtgcaatcaagtgggtcaaacacccctagccaacctgtgtggctaagacaataaaataatccgttcgaaatg |
42474065 |
T |
|
| Q |
813 |
ataagcttatcgcacatgatgctacaggagagtaccgcgtcat-attaacagtggtccattcttttgccccaggataacacatgcttatagctagaacac |
911 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42474064 |
ataagcttattgcacatgatgctacaggagagtaccgcgtaataattaacagtggtccattcttttgccccaggataacacatgcttatagctagaacac |
42473965 |
T |
|
| Q |
912 |
tagaaccaacacgtccgaaaattaatataacacatccagttgatgttggagcacaagaaaaggcagcatttcggtatgtcct |
993 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42473964 |
tagaaccaacacgtccgaaaattaatataacacatccagttgatgttggagcacaagaaaaggcagcatttcggtatgtcct |
42473883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 13 - 799
Target Start/End: Complemental strand, 42468185 - 42467416
Alignment:
| Q |
13 |
catcatggaataatttgcacgtagctaagaaaagactaagaaaatctaggaaaaaattgaacatgtatatataaaatcacaagtaaagcatagaccagta |
112 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |||||||||||||||| |
|
|
| T |
42468185 |
catcatggaataatttgcacgcagctaagaaaagactaagaaaatctatgaaaaaattgaacatttataaataaaatcacaagaaaagcatagaccagta |
42468086 |
T |
|
| Q |
113 |
gctccgtaaatgtttacagcctacaaaagcatgtatccgataatgctcaaaagcttcaatgacaaaaagaaatgatgtacaaaaatgctccataagtgca |
212 |
Q |
| |
|
||||| ||||||||||||||||||||||| || ||||| ||||||||| |||||||||||||||||| |||||| ||| ||||||| | |
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|
| T |
42468085 |
gctccataaatgtttacagcctacaaaagaatatatcctataatgctcgaaagcttcaatgacaaaatgaaatg-------------ctctataagtgta |
42467999 |
T |
|
| Q |
213 |
tcatggactaacttgtatgtagtctaaagcttcaa-tgacataaaagaaatgctctacacaaaactgattatataaatgcta-acttgctctgctaannn |
310 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
42467998 |
tcatggaataacttgtatgtagtctaaagcttcaaatgaca---aagaaatg-tctacacaaaactgattatataaatgctttacttgctccgctaattt |
42467903 |
T |
|
| Q |
311 |
nnnnnacgtccaaccagcaaagtcttttggtggttcaatccataagttctcaaaagcatttggttctaccaagtcaagacactgtttagtgggataatat |
410 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42467902 |
tttttacatccagccagcaaagtcttttggtggttcaatc-ataagttctcaaaagcatttggttctac-aagtcaagacactgtttagtgggataatat |
42467805 |
T |
|
| Q |
411 |
ctgtggtcatcgagagagaatgatatgcaacgctttccatagaaacggactttagggaagtagactatgtttctcattattccagtgacgtaagtcctag |
510 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
42467804 |
ctatggtcatcgagagagaatgatatgcaacgctttccatagaaatgggctttagggaagtagacgctgtttctcataattccagtgacgtaagtcctag |
42467705 |
T |
|
| Q |
511 |
aatgagatgacaaaaaaccagcaaaatgtgtcactccatctagtgttctcacttctttccattccattagtgtcagatctaacttgaaaattattgggtc |
610 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
42467704 |
aatgagatgacaaaaaactagcaaaaagtgtcactccatctagtgttctcacctcttttcattccattagtgtccgatctaatttgaaaattattgggtc |
42467605 |
T |
|
| Q |
611 |
ctcaccacaacatatatgaaccacaaatatatttcctttgtgctctatcataaatttctctttcgaccagtttttggaagtagaactttctactaggcat |
710 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| | ||||||||| ||||||||| |||| ||||||| |
|
|
| T |
42467604 |
ctcaccacaacatatatgaatgacaaatatatttcctttgtgatctatcataaagctctctttcgccgagtttttggcagtagaactctctaataggcat |
42467505 |
T |
|
| Q |
711 |
ttgggcggaggtacttcgagaacactccaagtgcaatcaagtgggtcaaacacccctagccaacctgtgtggctaagacaataaaataa |
799 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| | |||| |||||||||||||| ||| ||||| |||||||| | |||||||||||| |
|
|
| T |
42467504 |
ttgggcggaggtacaacgagaacgctccaagtatattcaattgggtcaaacacccgtagacaaccagtgtggcttaaacaataaaataa |
42467416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 319 - 993
Target Start/End: Complemental strand, 42480093 - 42479421
Alignment:
| Q |
319 |
tccaaccagcaaagtcttttggtggttcaatccataagttctcaaaagcatttggttctaccaagtcaagacactgtttagtgggataatatctgtggtc |
418 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| ||||||| | | ||||||||||||| |||| |
|
|
| T |
42480093 |
tccagccagtaaagtcttttggtggttcaatccagaagttctcaaaagtatttggttctaccttgtcacgacactgctcactgggataatatctacggtc |
42479994 |
T |
|
| Q |
419 |
atcgagagagaatgatatgcaacgctttccatagaaacggactttagggaagtagactatgtttctcattattccagtgacgtaagtcctagaatgagat |
518 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42479993 |
atcaagagagaatgatatgcaacgttttccatagaaacggactttagggaagtagacactgtttctcattattccagtggcgtaagtcctagaatgagat |
42479894 |
T |
|
| Q |
519 |
gacaaaaaaccagcaaaatgtgtcactccatctagtgttctcacttctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccac |
618 |
Q |
| |
|
|||||||||| ||||||| |||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42479893 |
gacaaaaaactagcaaaaagtgttactccatttagtgatctcacctctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccac |
42479794 |
T |
|
| Q |
619 |
aacatatatgaaccacaaatatatttcctttgtgctctatcataaatttctctttcgaccagtttttggaagtagaactttctactaggcatttgggcgg |
718 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||| ||| |||||||||||||||| |
|
|
| T |
42479793 |
aacatatatgaactacaaatatatttcctttgtgctctatcataaatttccctttcgaccaatttttggcagtagaactctctgctaggcatttgggcgg |
42479694 |
T |
|
| Q |
719 |
aggtacttcgagaacactccaagtgcaatcaagtgggtcaaacacccctagccaacctgtgtggctaagacaataaaataatccgttcgaaatgataagc |
818 |
Q |
| |
|
|||||||| || |||| ||||||| | |||||||||||||||||||||||||||||| ||| ||| |||||||||||||| || || |||| || |||| |
|
|
| T |
42479693 |
aggtactttgaaaacagtccaagtacgttcaagtgggtcaaacacccctagccaacctctgtcgctcagacaataaaataacccattagaaaagacaagc |
42479594 |
T |
|
| Q |
819 |
ttatcgcacatgatgctacaggagagtaccgcgtcat-attaacagtggtccattcttttgccccaggataacacatgcttatagctagaacactagaac |
917 |
Q |
| |
|
||||||||| |||||||| |||||| ||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||| |
|
|
| T |
42479593 |
ttatcgcac---atgctacatgagagttccgcgtcataattaacagtggtccattctttttccccaggataacacgtgcttatagctacaagactagaac |
42479497 |
T |
|
| Q |
918 |
caacacgtccgaaaattaatataacacatccagttgatgttggagcacaagaaaaggcagcatttcggtatgtcct |
993 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||| || | |||||||| |
|
|
| T |
42479496 |
caacacgtctgaaaattaatataacacatccagttgatgttggagcacatgagaaggcagcaatttgatatgtcct |
42479421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 42480281 - 42480200
Alignment:
| Q |
69 |
ttgaacatgtatatataaaatcacaagtaaagcatagaccagtagctccgtaaatgtttacagcctacaaaagcatgtatcc |
150 |
Q |
| |
|
||||||||||||| || |||| |||||||||||||| |||| ||||||| |||||||||| |||||| ||||||||||||| |
|
|
| T |
42480281 |
ttgaacatgtataaatcaaataacaagtaaagcataaaccaatagctccataaatgtttatagcctaataaagcatgtatcc |
42480200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 307
Target Start/End: Complemental strand, 42480188 - 42480111
Alignment:
| Q |
228 |
tatgtagtctaaagcttcaatgacataaaagaaatgctctacacaaaactgattatataaatgctaacttgctctgctaa |
307 |
Q |
| |
|
|||||||||| ||||||| ||| || |||| ||||||||||||||||||||||| | ||||||| |||||||| ||||| |
|
|
| T |
42480188 |
tatgtagtctcaagcttcgatgcca-aaaataaatgctctacacaaaactgatt-tgcaaatgcttacttgctccgctaa |
42480111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 416 - 578
Target Start/End: Original strand, 26046498 - 26046660
Alignment:
| Q |
416 |
gtcatcgagagagaatgatatgcaacgctttccatagaaacggactttagggaagtagactatgtttctcattattccagtgacgtaagtcctagaatga |
515 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |||| ||||| ||||| || || |||||| |||||| |
|
|
| T |
26046498 |
gtcatcaagagagaatgatatgcaacgctttccataaaaacgaactttagagaagtagatactgttcctcatatttccaaggaggtcagtccttgaatga |
26046597 |
T |
|
| Q |
516 |
gatgacaaaaaaccagcaaaatgtgtcactccatctagtgttctcacttctttccattccatt |
578 |
Q |
| |
|
|| ||||| |||| |||||| | || |||||||||||||| | | |||| |||||||||| |
|
|
| T |
26046598 |
gaagacaagaaactagcaaatagagttgctccatctagtgtttttagctcttcccattccatt |
26046660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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