View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16521_low_10 (Length: 564)
Name: NF16521_low_10
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16521_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 233 - 546
Target Start/End: Original strand, 11674671 - 11674991
Alignment:
| Q |
233 |
gtgaaatggcttaaatctattaaaccaagttccacacaaactagattaaagcaaattacccttattagagttac-------aatagtagtaataattgat |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11674671 |
gtgaaatggcttaaatctattaaaccaagttccacacaaactagattaaagaaaattacccttattagagttacaaattacaatagtagtaataattgat |
11674770 |
T |
|
| Q |
326 |
gcatcaatggaaacatgatcttgttgaaattggaaatgtcaaacatagcggttcaatgaagaaactagcataatggagagtctatgccatctagatatgt |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11674771 |
gcatcaatggaaacatgatcttgttgaaattggaaatgtcaaacatagcggtgcaatgaagaaactagcataatggagagtctatgccatctagatatgt |
11674870 |
T |
|
| Q |
426 |
attatcagcattacatatcgtgacattaccataaatatctacatgcaaagttcaataactataagtagatttgtcagtcgagacgcaacctgcgactgaa |
525 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11674871 |
attatcagcattacatatcgtgacattaccataaatatctacatgcaaagttcaataactataagtagatttgtcagtcgagacgcaacctgcgactgaa |
11674970 |
T |
|
| Q |
526 |
actttgttccatgctcgaatg |
546 |
Q |
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||||||||||||||||||||| |
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| T |
11674971 |
actttgttccatgctcgaatg |
11674991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 11674163 - 11674371
Alignment:
| Q |
18 |
gaacaataacggctcaaggtggattaaatggaacgccagctggttttgtttttcagttctgcagcatataagcagattctgaccttggcatccaaactgg |
117 |
Q |
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| T |
11674163 |
gaacaataacggctcaagttggattaaatggaacgccagctggttttgtttttcagttctgcaacatataagcagattttgaccttggcatccaaactgg |
11674262 |
T |
|
| Q |
118 |
agactagttttcatgcaatcaaatgt---tgatgtctaaagtcccgaagggtggttagagtgggaagggtcctccgaatataagaattcaggaccaggag |
214 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11674263 |
agactagttttcatgcaatcaaatgttggtgatgtctaaagtcccgaagggtggttagagtgggaagggtcctccgaatataagaaatcaggaccaggag |
11674362 |
T |
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| Q |
215 |
caaatctag |
223 |
Q |
| |
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||| ||||| |
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| T |
11674363 |
caattctag |
11674371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 286 - 537
Target Start/End: Original strand, 11682204 - 11682469
Alignment:
| Q |
286 |
aattacccttattagagttacaatagtagtaataattgatgcatcaatggaaacatgatcttgttgaaattggaaatgtcaaacatagcggttcaatgaa |
385 |
Q |
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||||| ||| |||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
11682204 |
aattaacctaattagagttaaaatagtagtaataattaatgcatcaatggaaacacgatcttgttgaaattggaaatgtcaa-catagtggttcaatgaa |
11682302 |
T |
|
| Q |
386 |
gaaactagcat--------------aatggagagtctatgccatctagatatgtattatcagcattacatatcgtgacattaccataaatatctacatgc |
471 |
Q |
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| T |
11682303 |
gaaactagcatgctatggtggtggcaatggagagtctatgccatctagatatgtattatcagcattacatatcatgacattaccataaatatctacatgc |
11682402 |
T |
|
| Q |
472 |
aaagttcaataact-ataagtagatttgtcagtcgagacgcaacctgcgactgaaactttgttccat |
537 |
Q |
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| T |
11682403 |
aaagttcaatatctcttgagaagatttgtcagtcaagacgcaacctgcgactgaaactttgttccat |
11682469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 235 - 296
Target Start/End: Original strand, 11682123 - 11682184
Alignment:
| Q |
235 |
gaaatggcttaaatctattaaaccaagttccacacaaactagattaaagcaaattaccctta |
296 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11682123 |
gaaatgtcttaaatctattaaaccaagttcgacacaaactagattaaagcaaattaccctta |
11682184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 458 - 546
Target Start/End: Complemental strand, 11640500 - 11640412
Alignment:
| Q |
458 |
aaatatctacatgcaaagttcaataactataagtagatttgtcagtcgagacgcaacctgcgactgaaactttgttccatgctcgaatg |
546 |
Q |
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|||||||||||| |||||||||||| |||||| ||||||||| || ||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
11640500 |
aaatatctacatttaaagttcaataattataagctgatttgtcaatcaagacgcaacctgcaactgaaactttgttctatgctcgaatg |
11640412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 441 - 546
Target Start/End: Complemental strand, 11631753 - 11631650
Alignment:
| Q |
441 |
tatcgtgacattaccataaatatctacatgcaaagttcaataactataagtagatttgtcagtcgagacgcaacctgcgactgaaactttgttccatgct |
540 |
Q |
| |
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|||| |||| ||||||||||||| | ||||| ||||||||| ||||||| |||| ||||| || |||||||||||| ||||||||||||||||||| || |
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| T |
11631753 |
tatcttgaccttaccataaatatgaa-atgcagagttcaata-ctataagcagatatgtcaatcaagacgcaacctgtgactgaaactttgttccattct |
11631656 |
T |
|
| Q |
541 |
cgaatg |
546 |
Q |
| |
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|||||| |
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|
| T |
11631655 |
cgaatg |
11631650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 4668938 - 4668978
Alignment:
| Q |
309 |
tagtagtaataattgatgcatcaatggaaacatgatcttgt |
349 |
Q |
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|||||||||||||| |||||||||||||| | ||||||||| |
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| T |
4668938 |
tagtagtaataattaatgcatcaatggaagcgtgatcttgt |
4668978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 30044734 - 30044797
Alignment:
| Q |
310 |
agtagtaataattgatgcatcaatggaaacatgatcttgttgaaattggaaatgtcaaacatag |
373 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| ||||||| ||||||| ||||| ||||||||| |
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|
| T |
30044734 |
agtagcaataattattgcatcaatggaaacataatcttgtagaaattgaaaatgccaaacatag |
30044797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 373
Target Start/End: Original strand, 30028462 - 30028528
Alignment:
| Q |
307 |
aatagtagtaataattgatgcatcaatggaaacatgatcttgttgaaattggaaatgtcaaacatag |
373 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| ||||||| ||||||| || || ||||||||| |
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| T |
30028462 |
aatagtagcaataattattgcatcaatggaaacataatcttgtagaaattgaaactgccaaacatag |
30028528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 325 - 373
Target Start/End: Original strand, 30056493 - 30056541
Alignment:
| Q |
325 |
tgcatcaatggaaacatgatcttgttgaaattggaaatgtcaaacatag |
373 |
Q |
| |
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||||||||||||||||| ||||||| ||||||| ||||| ||||||||| |
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| T |
30056493 |
tgcatcaatggaaacataatcttgtagaaattgaaaatgccaaacatag |
30056541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 37398549 - 37398594
Alignment:
| Q |
327 |
catcaatggaaacatgatcttgttgaaattggaaatgtcaaacata |
372 |
Q |
| |
|
||||||||||| || |||||||| ||||||| |||||||||||||| |
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|
| T |
37398549 |
catcaatggaagcacgatcttgtagaaattgaaaatgtcaaacata |
37398594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 360
Target Start/End: Original strand, 11812124 - 11812177
Alignment:
| Q |
307 |
aatagtagtaataattgatgcatcaatggaaacatgatcttgttgaaattggaa |
360 |
Q |
| |
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|||||||| | ||||| ||||||||||||||| |||||||||| ||||||||| |
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|
| T |
11812124 |
aatagtagaactaattaatgcatcaatggaaaaatgatcttgtaaaaattggaa |
11812177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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