View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16521_low_102 (Length: 205)

Name: NF16521_low_102
Description: NF16521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16521_low_102
NF16521_low_102
[»] chr3 (11 HSPs)
chr3 (15-188)||(10031467-10031640)
chr3 (15-187)||(10126392-10126564)
chr3 (15-187)||(10183703-10183875)
chr3 (15-187)||(10260162-10260334)
chr3 (15-187)||(10662990-10663162)
chr3 (111-181)||(13343661-13343731)
chr3 (111-176)||(13289237-13289302)
chr3 (111-176)||(13332476-13332541)
chr3 (111-176)||(13160552-13160617)
chr3 (111-176)||(13170603-13170668)
chr3 (67-97)||(10076794-10076824)
[»] chr8 (1 HSPs)
chr8 (15-180)||(11484493-11484658)
[»] scaffold0002 (2 HSPs)
scaffold0002 (111-176)||(136320-136385)
scaffold0002 (111-176)||(146371-146436)
[»] chr6 (1 HSPs)
chr6 (111-177)||(31680170-31680236)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 188
Target Start/End: Original strand, 10031467 - 10031640
Alignment:
Q  15 tgaatgaatcattgatggatgagatggaaacaagtctacttactcatgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10031467 tgaatgaatcattgatggatgagatggaaacaagtctacttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaa 10031566  T
Q  115 acaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatcagctacaatgcca 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10031567 acaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatcagctacaatgcca 10031640  T

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Target: chr3; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 10126392 - 10126564
Alignment:
Q  15 tgaatgaatcattgatggatgagatggaaacaagtctacttactcatgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaa 114  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10126392 tgaatgaatcattgatgtatgagatggaaacaagtctacttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaa 10126491  T
Q  115 acaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatcagctacaatgcc 187  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10126492 acaatggctggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatcagctacaatgcc 10126564  T

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Target: chr3; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 10183703 - 10183875
Alignment:
Q  15 tgaatgaatcattgatggatgagatggaaacaagtctacttactcatgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaa 114  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10183703 tgaatgaatcattgatagatgagatggaaacaagtctacttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaa 10183802  T
Q  115 acaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatcagctacaatgcc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10183803 acaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgttcaatcaaatcagctacaatgcc 10183875  T

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Target: chr3; HSP #4
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 10260162 - 10260334
Alignment:
Q  15 tgaatgaatcattgatggatgagatggaaacaagtctacttactcatgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaa 114  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10260162 tgaatgaatcattgatgtatgagatggaaacaagtctacttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaa 10260261  T
Q  115 acaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatcagctacaatgcc 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10260262 acaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgctcaataaaatcagctacaatgcc 10260334  T

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Target: chr3; HSP #5
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 10662990 - 10663162
Alignment:
Q  15 tgaatgaatcattgatggatgagatggaaacaagtctacttactcatgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaa 114  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10662990 tgaatgaatcattgatgtatgagatggaaacaagtctacttactcttgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaa 10663089  T
Q  115 acaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatcagctacaatgcc 187  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  10663090 acaatggttggatcggttaaaagatgcaatctatgatgcagaggatttactcaatcaaatcagctacaatgcc 10663162  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 13343661 - 13343731
Alignment:
Q  111 tcaaacaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatcagctac 181  Q
    |||||||||||||||||| | | |||||||||||||||||||||||||||||||| || ||||||| ||||    
T  13343661 tcaaacaatggttggatcagctgaaagatgcaatctatgatgctgaggatttgcttaaccaaatcaactac 13343731  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 13289237 - 13289302
Alignment:
Q  111 tcaaacaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatca 176  Q
    |||||||||||||||||| | | |||||||||||||||||||||||||||||||| || |||||||    
T  13289237 tcaaacaatggttggatcagctgaaagatgcaatctatgatgctgaggatttgcttaaccaaatca 13289302  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 13332476 - 13332541
Alignment:
Q  111 tcaaacaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatca 176  Q
    |||||||||||||||||| | | |||||||||||||||||||||||||||||||| || |||||||    
T  13332476 tcaaacaatggttggatcagctgaaagatgcaatctatgatgctgaggatttgcttaaccaaatca 13332541  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 13160552 - 13160617
Alignment:
Q  111 tcaaacaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatca 176  Q
    ||||||||||| ||||||   | |||||||||||||||||||||||||||||||| || |||||||    
T  13160552 tcaaacaatggatggatcaactgaaagatgcaatctatgatgctgaggatttgcttaaccaaatca 13160617  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 13170603 - 13170668
Alignment:
Q  111 tcaaacaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatca 176  Q
    ||||||||||| ||||||   | |||||||||||||||||||||||||||||||| || |||||||    
T  13170603 tcaaacaatggatggatcaactgaaagatgcaatctatgatgctgaggatttgcttaaccaaatca 13170668  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 97
Target Start/End: Original strand, 10076794 - 10076824
Alignment:
Q  67 tgtactagatgatgcagaggagaagcagatc 97  Q
    |||||||||||||||||||||||||||||||    
T  10076794 tgtactagatgatgcagaggagaagcagatc 10076824  T

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Target: chr8 (Bit Score: 94; Significance: 4e-46; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 11484493 - 11484658
Alignment:
Q  15 tgaatgaatcattgatggatgagatggaaacaagtctacttactcatgaggttgtactagatgatgcagaggagaagcagatcctcaaacccagaatcaa 114  Q
    ||||||||||||||||||| || ||||||||||  |||||| ||| ||||||||| || ||||||||||| ||||||||||||||  |||||| ||||||    
T  11484493 tgaatgaatcattgatggaagaaatggaaacaacactacttgctcttgaggttgtgcttgatgatgcagaagagaagcagatccttcaacccaaaatcaa 11484592  T
Q  115 acaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatcagcta 180  Q
    ||||||| | |||||||| ||||||||||||| |||||||||||||||||| ||| ||||||||||    
T  11484593 acaatggcttgatcggttgaaagatgcaatctttgatgctgaggatttgcttaatgaaatcagcta 11484658  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 136385 - 136320
Alignment:
Q  111 tcaaacaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatca 176  Q
    ||||||||||| ||||||   | |||||||||||||||||||||||||||||||| || |||||||    
T  136385 tcaaacaatggatggatcaactgaaagatgcaatctatgatgctgaggatttgcttaaccaaatca 136320  T

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Target: scaffold0002; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 146436 - 146371
Alignment:
Q  111 tcaaacaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatca 176  Q
    ||||||||||| ||||||   | |||||||||||||||||||||||||||||||| || |||||||    
T  146436 tcaaacaatggatggatcaactgaaagatgcaatctatgatgctgaggatttgcttaaccaaatca 146371  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 31680236 - 31680170
Alignment:
Q  111 tcaaacaatggttggatcggttaaaagatgcaatctatgatgctgaggatttgctcaatcaaatcag 177  Q
    ||||||||||| | |||  ||| ||||||||||| ||||||||||||||||||||||| || |||||    
T  31680236 tcaaacaatggcttgatgagttgaaagatgcaatatatgatgctgaggatttgctcaaccagatcag 31680170  T

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